Wall clock time and date at job start Sun Mar 29 2020 21:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47382 * 2 1 4 4 H 1.08995 * 109.47114 * 305.30778 * 3 2 1 5 5 C 1.50703 * 109.46838 * 185.30755 * 3 2 1 6 6 H 1.07998 * 120.00472 * 239.99820 * 5 3 2 7 7 C 1.37881 * 119.99565 * 60.00551 * 5 3 2 8 8 N 1.31514 * 120.00086 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99469 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47003 * 89.99943 * 9 7 5 11 11 H 1.48506 * 109.46958 * 209.99882 * 9 7 5 12 12 H 1.48494 * 109.47526 * 329.99400 * 9 7 5 13 13 N 1.46900 * 109.47164 * 65.31443 * 3 2 1 14 14 C 1.46900 * 111.00158 * 222.12246 * 13 3 2 15 15 C 1.53001 * 109.52033 * 305.83404 * 14 13 3 16 16 C 1.53172 * 109.52661 * 185.70286 * 14 13 3 17 17 C 1.53180 * 109.03923 * 183.11197 * 16 14 13 18 18 C 1.53090 * 109.16083 * 56.98272 * 17 16 14 19 19 O 1.42910 * 109.41414 * 302.39009 * 18 17 16 20 20 C 1.42909 * 114.15127 * 61.13141 * 19 18 17 21 21 H 1.08997 * 109.47326 * 294.87137 * 1 2 3 22 22 H 1.09008 * 109.46639 * 54.86214 * 1 2 3 23 23 H 1.08991 * 109.47664 * 174.86560 * 1 2 3 24 24 H 1.09007 * 109.47016 * 119.99732 * 2 1 3 25 25 H 1.09002 * 109.47343 * 239.99582 * 2 1 3 26 26 H 0.96998 * 119.99491 * 180.02562 * 8 7 5 27 27 H 1.00902 * 111.00149 * 346.07366 * 13 3 2 28 28 H 1.09003 * 109.47581 * 66.58059 * 15 14 13 29 29 H 1.09002 * 109.47348 * 186.58368 * 15 14 13 30 30 H 1.09005 * 109.46866 * 306.58276 * 15 14 13 31 31 H 1.08999 * 109.54452 * 302.98031 * 16 14 13 32 32 H 1.09002 * 109.53864 * 63.15770 * 16 14 13 33 33 H 1.08997 * 109.52436 * 176.89216 * 17 16 14 34 34 H 1.09003 * 109.51995 * 297.01953 * 17 16 14 35 35 H 1.08995 * 109.48380 * 62.37163 * 18 17 16 36 36 H 1.09006 * 109.47975 * 182.41296 * 18 17 16 37 37 H 1.08996 * 109.53621 * 178.92550 * 20 19 18 38 38 H 1.08993 * 109.43204 * 58.88180 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6012 1.9830 -0.8386 5 6 3.5413 1.4444 -0.1314 6 1 4.1506 1.8875 0.6423 7 6 4.1370 0.8804 -1.2397 8 7 3.3950 0.3405 -2.1818 9 14 5.9978 0.8834 -1.4030 10 1 6.5508 -0.3492 -0.7864 11 1 6.3686 0.9272 -2.8403 12 1 6.5535 2.0747 -0.7121 13 7 1.6580 2.0970 1.2584 14 6 1.1863 3.4671 1.0172 15 6 2.2455 4.2413 0.2300 16 6 0.9328 4.1647 2.3571 17 6 0.3681 5.5639 2.0930 18 6 -0.9051 5.4414 1.2518 19 8 -0.6056 4.7565 0.0338 20 6 -0.1177 3.4257 0.2161 21 1 -0.3634 0.4322 0.9323 22 1 -0.3633 0.5915 -0.8405 23 1 -0.3634 -1.0234 -0.0920 24 1 1.8933 -0.5138 0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 3.8141 -0.0565 -2.9613 27 1 0.9623 1.5565 1.7504 28 1 2.3395 3.8152 -0.7689 29 1 1.9483 5.2871 0.1524 30 1 3.2034 4.1730 0.7457 31 1 0.2158 3.5860 2.9395 32 1 1.8694 4.2462 2.9086 33 1 0.1330 6.0468 3.0415 34 1 1.1058 6.1587 1.5544 35 1 -1.6562 4.8812 1.8086 36 1 -1.2878 6.4365 1.0246 37 1 0.0673 2.9689 -0.7561 38 1 -0.8590 2.8388 0.7585 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163696.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:45 Heat of formation + Delta-G solvation = -75.010183 kcal Electronic energy + Delta-G solvation = -17310.255116 eV Core-core repulsion = 14765.433223 eV Total energy + Delta-G solvation = -2544.821892 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.96339 -37.98165 -35.31710 -33.87193 -32.77946 -30.19931 -28.73003 -27.44628 -26.00567 -24.78368 -23.15377 -21.27077 -19.80557 -18.33368 -17.60324 -16.91506 -16.66825 -16.15866 -15.79195 -15.49814 -14.84644 -14.66979 -14.27520 -13.78467 -13.65373 -13.47787 -13.07189 -12.86697 -12.79017 -12.61754 -12.49164 -12.21278 -12.10606 -11.84904 -11.71179 -11.49031 -11.36466 -11.09399 -11.02145 -10.43662 -10.35775 -8.85863 -8.01057 -6.10256 1.41126 1.42561 1.52047 2.46396 2.94708 3.24618 3.62299 3.85907 3.94352 4.06716 4.22944 4.26139 4.47026 4.54362 4.55536 4.66215 4.69421 4.76895 4.80812 4.90435 5.01744 5.06229 5.09837 5.15285 5.23833 5.33903 5.35557 5.46672 5.58370 5.66466 5.80675 5.94134 6.26108 6.42298 6.67582 7.01487 7.02176 7.57282 9.01470 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031546 B = 0.008894 C = 0.007823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.387735 B = 3147.493390 C = 3578.504365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.132 4.132 3 C 0.226 3.774 4 H -0.009 1.009 5 C -0.493 4.493 6 H 0.047 0.953 7 C 0.007 3.993 8 N -0.921 5.921 9 Si 0.947 3.053 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.674 5.674 14 C 0.087 3.913 15 C -0.112 4.112 16 C -0.102 4.102 17 C -0.150 4.150 18 C 0.052 3.948 19 O -0.402 6.402 20 C 0.047 3.953 21 H 0.056 0.944 22 H 0.035 0.965 23 H 0.055 0.945 24 H 0.036 0.964 25 H 0.067 0.933 26 H 0.257 0.743 27 H 0.328 0.672 28 H 0.027 0.973 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.110 0.890 37 H 0.066 0.934 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.207 7.387 8.057 13.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.171 4.171 3 C 0.118 3.882 4 H 0.009 0.991 5 C -0.532 4.532 6 H 0.065 0.935 7 C -0.190 4.190 8 N -0.563 5.563 9 Si 0.774 3.226 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.306 5.306 14 C -0.005 4.005 15 C -0.170 4.170 16 C -0.140 4.140 17 C -0.188 4.188 18 C -0.024 4.024 19 O -0.320 6.320 20 C -0.032 4.032 21 H 0.075 0.925 22 H 0.054 0.946 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.147 0.853 28 H 0.047 0.953 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.128 0.872 37 H 0.084 0.916 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.564 7.590 7.857 13.287 hybrid contribution 0.427 -0.705 -0.752 1.116 sum -7.136 6.885 7.104 12.198 Atomic orbital electron populations 1.21774 0.96397 1.01070 1.00343 1.21780 0.94124 0.99867 1.01295 1.18956 0.93821 0.89827 0.85637 0.99135 1.21476 0.92938 1.35053 1.03723 0.93467 1.25615 1.01613 0.95891 0.95927 1.69990 1.35856 1.40413 1.10001 0.85717 0.81781 0.78299 0.76762 1.20414 1.21327 1.19838 1.60818 1.43894 1.01883 1.24020 1.21494 0.92714 0.90624 0.95645 1.21607 0.97918 0.98615 0.98832 1.21561 1.01557 0.95883 0.95028 1.22234 0.98125 0.96781 1.01634 1.22835 0.96196 0.97933 0.85450 1.87882 1.85110 1.27235 1.31757 1.23329 0.95289 0.83915 1.00653 0.92510 0.94563 0.92564 0.94552 0.91434 0.93364 0.85334 0.95336 0.91887 0.93676 0.91169 0.91429 0.88233 0.91517 0.92280 0.87156 0.91611 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.09 9.71 71.98 0.70 -4.39 16 2 C -0.13 -6.11 5.21 30.59 0.16 -5.95 16 3 C 0.23 10.98 1.18 44.17 0.05 11.04 16 4 H -0.01 -0.48 4.98 -2.39 -0.01 -0.49 16 5 C -0.49 -27.16 7.78 25.60 0.20 -26.96 16 6 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 7 C 0.01 0.38 5.29 84.66 0.45 0.83 16 8 N -0.92 -53.30 11.29 21.45 0.24 -53.06 16 9 Si 0.95 44.86 29.54 68.60 2.03 46.89 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 12 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 13 N -0.67 -27.38 5.93 -451.65 -2.68 -30.06 16 14 C 0.09 3.11 0.69 3.62 0.00 3.11 16 15 C -0.11 -4.51 7.16 71.98 0.52 -3.99 16 16 C -0.10 -2.84 5.12 30.71 0.16 -2.68 16 17 C -0.15 -3.35 5.78 30.68 0.18 -3.17 16 18 C 0.05 1.19 6.84 72.01 0.49 1.68 16 19 O -0.40 -13.01 10.31 -148.98 -1.54 -14.55 16 20 C 0.05 1.63 5.42 72.02 0.39 2.02 16 21 H 0.06 1.80 6.79 -2.39 -0.02 1.78 16 22 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 23 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 25 H 0.07 3.61 5.94 -2.39 -0.01 3.60 16 26 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 27 H 0.33 12.00 6.65 -89.69 -0.60 11.40 16 28 H 0.03 1.33 6.52 -2.39 -0.02 1.31 16 29 H 0.06 2.22 6.03 -2.39 -0.01 2.20 16 30 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.07 1.62 6.49 -2.39 -0.02 1.60 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.07 2.71 6.48 -2.39 -0.02 2.69 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -60.87 285.99 1.78 -59.09 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.43 Total: 20.15 kcal Atomic # 6 Polarization: -31.76 SS G_CDS: 3.29 Total: -28.47 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -2.44 Total: -83.12 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -1.54 Total: -14.55 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -60.87 1.78 -59.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163696.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.920 kcal (2) G-P(sol) polarization free energy of solvation -60.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds