Wall clock time and date at job start Sun Mar 29 2020 21:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46867 * 2 1 4 4 H 1.09000 * 109.47107 * 305.86677 * 3 2 1 5 5 C 1.50702 * 109.47014 * 185.86856 * 3 2 1 6 6 H 1.07998 * 120.00459 * 240.00138 * 5 3 2 7 7 C 1.37877 * 120.00018 * 59.99692 * 5 3 2 8 8 N 1.31522 * 119.99975 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00077 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47217 * 60.00723 * 9 7 5 11 11 H 1.48503 * 109.47289 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47647 * 300.00373 * 9 7 5 13 13 N 1.46897 * 109.47063 * 65.86967 * 3 2 1 14 14 C 1.46902 * 110.99926 * 213.35569 * 13 3 2 15 15 C 1.52999 * 109.56960 * 64.22629 * 14 13 3 16 16 C 1.53174 * 109.52173 * 184.38234 * 14 13 3 17 17 C 1.53182 * 109.03462 * 176.88551 * 16 14 13 18 18 C 1.53096 * 109.16598 * 303.02470 * 17 16 14 19 19 O 1.42895 * 109.41665 * 57.60385 * 18 17 16 20 20 C 1.42905 * 114.10060 * 298.84569 * 19 18 17 21 21 H 1.08998 * 109.46930 * 184.76916 * 1 2 3 22 22 H 1.08993 * 109.47235 * 304.77096 * 1 2 3 23 23 H 1.09003 * 109.46990 * 64.77318 * 1 2 3 24 24 H 1.08999 * 109.47404 * 240.00292 * 2 1 3 25 25 H 1.09002 * 109.47270 * 119.99667 * 2 1 3 26 26 H 0.96996 * 119.99476 * 179.97438 * 8 7 5 27 27 H 1.00905 * 110.99642 * 89.40605 * 13 3 2 28 28 H 1.09004 * 109.46962 * 174.83168 * 15 14 13 29 29 H 1.08995 * 109.47248 * 294.82983 * 15 14 13 30 30 H 1.09003 * 109.47091 * 54.83500 * 15 14 13 31 31 H 1.09000 * 109.54328 * 57.02334 * 16 14 13 32 32 H 1.08997 * 109.54868 * 296.75397 * 16 14 13 33 33 H 1.09005 * 109.52164 * 62.92745 * 17 16 14 34 34 H 1.09001 * 109.52007 * 183.11247 * 17 16 14 35 35 H 1.08992 * 109.48060 * 177.59431 * 18 17 16 36 36 H 1.09005 * 109.47662 * 297.61507 * 18 17 16 37 37 H 1.09003 * 109.48415 * 181.13775 * 20 19 18 38 38 H 1.08996 * 109.47852 * 301.16304 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5933 1.9858 -0.8328 5 6 3.5399 1.4451 -0.1453 6 1 4.1563 1.8858 0.6243 7 6 4.1254 0.8848 -1.2607 8 7 3.3749 0.3485 -2.1982 9 14 5.9847 0.8885 -1.4411 10 1 6.5936 0.1487 -0.3066 11 1 6.3594 0.2314 -2.7191 12 1 6.4793 2.2887 -1.4415 13 7 1.6693 2.0930 1.2639 14 6 1.3948 3.5216 1.0602 15 6 0.1744 3.6845 0.1518 16 6 1.1195 4.1878 2.4117 17 6 0.9118 5.6900 2.1951 18 6 2.1453 6.2729 1.5004 19 8 2.3626 5.5884 0.2651 20 6 2.6096 4.1883 0.4093 21 1 -0.3633 -1.0241 0.0854 22 1 -0.3633 0.5860 0.8441 23 1 -0.3633 0.4380 -0.9297 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.7868 -0.0453 -2.9830 27 1 2.3843 1.9583 1.9631 28 1 -0.0834 4.7409 0.0757 29 1 0.4047 3.2944 -0.8396 30 1 -0.6675 3.1344 0.5722 31 1 1.9689 4.0293 3.0761 32 1 0.2224 3.7559 2.8552 33 1 0.0326 5.8499 1.5709 34 1 0.7701 6.1806 3.1581 35 1 1.9854 7.3332 1.3054 36 1 3.0170 6.1489 2.1431 37 1 2.7842 3.7469 -0.5719 38 1 3.4875 4.0369 1.0374 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:48 Heat of formation + Delta-G solvation = -61.187233 kcal Electronic energy + Delta-G solvation = -17343.519146 eV Core-core repulsion = 14799.296662 eV Total energy + Delta-G solvation = -2544.222484 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.46826 -36.19178 -33.70258 -32.04144 -31.22436 -28.84685 -26.53906 -26.10790 -24.43902 -22.95149 -21.71751 -19.34976 -18.34530 -16.76175 -15.94646 -15.34986 -14.78475 -14.64904 -14.42729 -13.74214 -13.19641 -12.90541 -12.66108 -12.22934 -12.05150 -11.76978 -11.34912 -11.24417 -11.07639 -11.00767 -10.92474 -10.72387 -10.50979 -10.47849 -9.99584 -9.74221 -9.61970 -9.41209 -9.25034 -8.75584 -8.36328 -7.22804 -6.01731 -4.13949 3.27603 3.32988 3.35454 4.36851 4.40075 5.04024 5.15066 5.20797 5.26215 5.42357 5.57986 5.66379 5.76006 5.95941 6.06155 6.14145 6.23894 6.34654 6.39913 6.47209 6.54445 6.55723 6.58408 6.72931 6.91246 6.98430 7.16621 7.19973 7.47015 7.57233 7.71446 7.79156 8.09379 8.13811 8.34132 8.66110 8.98832 9.53080 10.98559 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025078 B = 0.010524 C = 0.008189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.235960 B = 2659.975881 C = 3418.603818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C 0.210 3.790 4 H 0.040 0.960 5 C -0.545 4.545 6 H 0.053 0.947 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.675 5.675 14 C 0.090 3.910 15 C -0.129 4.129 16 C -0.110 4.110 17 C -0.154 4.154 18 C 0.059 3.941 19 O -0.388 6.388 20 C 0.042 3.958 21 H 0.023 0.977 22 H 0.049 0.951 23 H 0.035 0.965 24 H 0.089 0.911 25 H 0.029 0.971 26 H 0.262 0.738 27 H 0.328 0.672 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.042 0.958 37 H 0.116 0.884 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.079 7.158 6.512 10.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.102 3.898 4 H 0.058 0.942 5 C -0.584 4.584 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.520 5.520 9 Si 0.714 3.286 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.306 5.306 14 C -0.002 4.002 15 C -0.186 4.186 16 C -0.148 4.148 17 C -0.192 4.192 18 C -0.018 4.018 19 O -0.306 6.306 20 C -0.036 4.036 21 H 0.042 0.958 22 H 0.068 0.932 23 H 0.054 0.946 24 H 0.107 0.893 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.144 0.856 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.134 0.866 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.745 6.966 6.090 10.398 hybrid contribution 2.089 0.079 0.036 2.091 sum -2.656 7.045 6.126 9.707 Atomic orbital electron populations 1.21720 0.99153 0.98420 1.00256 1.21494 0.92023 0.99372 1.01502 1.19245 0.92974 0.91345 0.86242 0.94227 1.21826 0.92596 1.38716 1.05248 0.92888 1.24913 0.97721 0.94919 0.95830 1.69867 1.34794 1.38132 1.09207 0.86758 0.86214 0.78276 0.77376 1.20332 1.21246 1.20306 1.61043 1.48671 1.08328 1.12533 1.21331 0.95171 0.89775 0.93925 1.21799 0.96889 1.00242 0.99668 1.21630 1.01835 0.94103 0.97206 1.22233 0.99636 0.96738 1.00615 1.22471 0.96085 0.96236 0.87027 1.87919 1.91821 1.22053 1.28792 1.23734 0.96400 0.79275 1.04159 0.95767 0.93200 0.94612 0.89270 0.95221 0.92785 0.85562 0.93003 0.92205 0.92824 0.92542 0.91342 0.90946 0.91718 0.89914 0.94017 0.86586 0.94006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.86 37.16 0.37 -2.47 16 2 C -0.11 -2.48 5.45 -26.73 -0.15 -2.63 16 3 C 0.21 4.94 1.28 -68.86 -0.09 4.85 16 4 H 0.04 1.03 5.33 -51.93 -0.28 0.76 16 5 C -0.54 -14.00 6.53 -34.44 -0.22 -14.22 16 6 H 0.05 1.35 7.21 -52.49 -0.38 0.98 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.38 11.29 55.43 0.63 -23.75 16 9 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.68 -13.63 5.36 -94.10 -0.50 -14.13 16 14 C 0.09 1.64 0.71 -131.46 -0.09 1.55 16 15 C -0.13 -2.31 7.99 37.16 0.30 -2.01 16 16 C -0.11 -1.66 5.03 -26.55 -0.13 -1.79 16 17 C -0.15 -2.03 5.78 -26.59 -0.15 -2.18 16 18 C 0.06 0.85 6.84 37.21 0.25 1.10 16 19 O -0.39 -7.17 10.28 -35.23 -0.36 -7.53 16 20 C 0.04 0.83 4.45 37.21 0.17 1.00 16 21 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.05 0.99 7.66 -51.93 -0.40 0.59 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.09 2.35 5.94 -51.93 -0.31 2.04 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 27 H 0.33 6.63 8.16 -39.29 -0.32 6.31 16 28 H 0.05 0.86 6.04 -51.93 -0.31 0.54 16 29 H 0.06 1.20 6.36 -51.93 -0.33 0.87 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.96 6.51 -51.93 -0.34 0.62 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.12 2.69 6.15 -51.93 -0.32 2.37 16 38 H 0.04 0.84 7.80 -51.93 -0.41 0.44 16 LS Contribution 285.73 15.07 4.31 4.31 Total: -1.00 -26.52 285.73 -7.13 -33.65 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.33 Total: 6.70 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 0.15 Total: -15.06 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.12 Total: -37.88 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.36 Total: -7.53 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -26.52 -7.13 -33.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.539 kcal (2) G-P(sol) polarization free energy of solvation -26.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds