Wall clock time and date at job start Sun Mar 29 2020 21:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46867 * 2 1 4 4 H 1.09000 * 109.47107 * 305.86677 * 3 2 1 5 5 C 1.50702 * 109.47014 * 185.86856 * 3 2 1 6 6 H 1.07998 * 120.00459 * 240.00138 * 5 3 2 7 7 C 1.37877 * 120.00018 * 59.99692 * 5 3 2 8 8 N 1.31522 * 119.99975 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00077 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47217 * 60.00723 * 9 7 5 11 11 H 1.48503 * 109.47289 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47647 * 300.00373 * 9 7 5 13 13 N 1.46897 * 109.47063 * 65.86967 * 3 2 1 14 14 C 1.46902 * 110.99926 * 213.35569 * 13 3 2 15 15 C 1.52999 * 109.56960 * 64.22629 * 14 13 3 16 16 C 1.53174 * 109.52173 * 184.38234 * 14 13 3 17 17 C 1.53182 * 109.03462 * 176.88551 * 16 14 13 18 18 C 1.53096 * 109.16598 * 303.02470 * 17 16 14 19 19 O 1.42895 * 109.41665 * 57.60385 * 18 17 16 20 20 C 1.42905 * 114.10060 * 298.84569 * 19 18 17 21 21 H 1.08998 * 109.46930 * 184.76916 * 1 2 3 22 22 H 1.08993 * 109.47235 * 304.77096 * 1 2 3 23 23 H 1.09003 * 109.46990 * 64.77318 * 1 2 3 24 24 H 1.08999 * 109.47404 * 240.00292 * 2 1 3 25 25 H 1.09002 * 109.47270 * 119.99667 * 2 1 3 26 26 H 0.96996 * 119.99476 * 179.97438 * 8 7 5 27 27 H 1.00905 * 110.99642 * 89.40605 * 13 3 2 28 28 H 1.09004 * 109.46962 * 174.83168 * 15 14 13 29 29 H 1.08995 * 109.47248 * 294.82983 * 15 14 13 30 30 H 1.09003 * 109.47091 * 54.83500 * 15 14 13 31 31 H 1.09000 * 109.54328 * 57.02334 * 16 14 13 32 32 H 1.08997 * 109.54868 * 296.75397 * 16 14 13 33 33 H 1.09005 * 109.52164 * 62.92745 * 17 16 14 34 34 H 1.09001 * 109.52007 * 183.11247 * 17 16 14 35 35 H 1.08992 * 109.48060 * 177.59431 * 18 17 16 36 36 H 1.09005 * 109.47662 * 297.61507 * 18 17 16 37 37 H 1.09003 * 109.48415 * 181.13775 * 20 19 18 38 38 H 1.08996 * 109.47852 * 301.16304 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5933 1.9858 -0.8328 5 6 3.5399 1.4451 -0.1453 6 1 4.1563 1.8858 0.6243 7 6 4.1254 0.8848 -1.2607 8 7 3.3749 0.3485 -2.1982 9 14 5.9847 0.8885 -1.4411 10 1 6.5936 0.1487 -0.3066 11 1 6.3594 0.2314 -2.7191 12 1 6.4793 2.2887 -1.4415 13 7 1.6693 2.0930 1.2639 14 6 1.3948 3.5216 1.0602 15 6 0.1744 3.6845 0.1518 16 6 1.1195 4.1878 2.4117 17 6 0.9118 5.6900 2.1951 18 6 2.1453 6.2729 1.5004 19 8 2.3626 5.5884 0.2651 20 6 2.6096 4.1883 0.4093 21 1 -0.3633 -1.0241 0.0854 22 1 -0.3633 0.5860 0.8441 23 1 -0.3633 0.4380 -0.9297 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.7868 -0.0453 -2.9830 27 1 2.3843 1.9583 1.9631 28 1 -0.0834 4.7409 0.0757 29 1 0.4047 3.2944 -0.8396 30 1 -0.6675 3.1344 0.5722 31 1 1.9689 4.0293 3.0761 32 1 0.2224 3.7559 2.8552 33 1 0.0326 5.8499 1.5709 34 1 0.7701 6.1806 3.1581 35 1 1.9854 7.3332 1.3054 36 1 3.0170 6.1489 2.1431 37 1 2.7842 3.7469 -0.5719 38 1 3.4875 4.0369 1.0374 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:47 Heat of formation + Delta-G solvation = -77.958517 kcal Electronic energy + Delta-G solvation = -17344.246404 eV Core-core repulsion = 14799.296662 eV Total energy + Delta-G solvation = -2544.949742 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.89798 -37.84510 -35.33548 -33.70139 -32.84767 -30.45501 -28.05666 -27.89467 -25.83720 -24.74173 -23.08887 -21.12895 -19.80032 -18.66125 -17.42638 -16.82748 -16.67835 -16.06359 -15.77321 -15.48019 -14.80040 -14.41923 -14.25592 -13.67274 -13.52549 -13.40967 -13.10133 -12.97517 -12.78796 -12.62710 -12.50169 -12.30686 -12.20440 -11.83599 -11.58846 -11.45214 -11.19665 -11.16844 -10.90542 -10.39985 -10.35709 -8.95279 -8.03675 -6.22664 1.38309 1.39589 1.45675 2.40568 3.03530 3.17742 3.65460 3.89129 3.98641 4.12455 4.25060 4.30774 4.54629 4.63652 4.73700 4.80898 4.83205 4.88639 4.94376 4.97911 5.02296 5.07343 5.13624 5.25374 5.28776 5.44616 5.47547 5.50893 5.57570 5.69125 5.83474 6.12526 6.24166 6.32749 6.48325 6.86876 7.06746 7.47135 8.93355 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025078 B = 0.010524 C = 0.008189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.235960 B = 2659.975881 C = 3418.603818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.220 3.780 4 H 0.012 0.988 5 C -0.547 4.547 6 H 0.050 0.950 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.941 3.059 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.667 5.667 14 C 0.088 3.912 15 C -0.121 4.121 16 C -0.105 4.105 17 C -0.147 4.147 18 C 0.048 3.952 19 O -0.407 6.407 20 C 0.055 3.945 21 H 0.042 0.958 22 H 0.059 0.941 23 H 0.028 0.972 24 H 0.058 0.942 25 H 0.026 0.974 26 H 0.260 0.740 27 H 0.329 0.671 28 H 0.067 0.933 29 H 0.028 0.972 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.591 8.347 8.347 12.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.111 3.889 4 H 0.030 0.970 5 C -0.586 4.586 6 H 0.069 0.931 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.768 3.232 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.297 5.297 14 C -0.004 4.004 15 C -0.178 4.178 16 C -0.142 4.142 17 C -0.184 4.184 18 C -0.028 4.028 19 O -0.325 6.325 20 C -0.023 4.023 21 H 0.061 0.939 22 H 0.078 0.922 23 H 0.047 0.953 24 H 0.077 0.923 25 H 0.045 0.955 26 H 0.069 0.931 27 H 0.146 0.854 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.127 0.873 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -5.258 8.167 7.944 12.548 hybrid contribution 2.236 -0.206 -0.513 2.304 sum -3.022 7.961 7.430 11.302 Atomic orbital electron populations 1.21570 0.96644 0.99773 1.00257 1.21378 0.94269 0.98837 0.99757 1.18967 0.91641 0.91363 0.86897 0.96998 1.22104 0.93896 1.37730 1.04911 0.93136 1.25579 1.01335 0.95060 0.95864 1.69996 1.36100 1.39157 1.09598 0.85879 0.81969 0.78064 0.77321 1.19722 1.21189 1.20303 1.60989 1.48117 1.09795 1.10771 1.21451 0.94412 0.88507 0.96053 1.21724 0.96986 1.01193 0.97923 1.21602 1.02489 0.95346 0.94802 1.22209 0.98837 0.95151 1.02250 1.22820 0.97073 0.97225 0.85661 1.87880 1.92019 1.21070 1.31567 1.23334 0.96903 0.80537 1.01516 0.93881 0.92202 0.95319 0.92308 0.95544 0.93054 0.85449 0.91380 0.95320 0.92002 0.92078 0.90285 0.90788 0.88319 0.87273 0.93402 0.90992 0.94928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 9.86 71.98 0.71 -4.33 16 2 C -0.10 -4.95 5.45 30.60 0.17 -4.78 16 3 C 0.22 10.59 1.28 44.17 0.06 10.64 16 4 H 0.01 0.66 5.33 -2.39 -0.01 0.65 16 5 C -0.55 -28.71 6.53 25.60 0.17 -28.55 16 6 H 0.05 2.62 7.21 -2.91 -0.02 2.60 16 7 C 0.02 1.18 5.29 84.65 0.45 1.62 16 8 N -0.91 -51.77 11.29 21.45 0.24 -51.53 16 9 Si 0.94 43.45 29.54 68.60 2.03 45.47 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 N -0.67 -26.63 5.36 -451.64 -2.42 -29.05 16 14 C 0.09 3.11 0.71 3.62 0.00 3.11 16 15 C -0.12 -4.26 7.99 71.98 0.58 -3.69 16 16 C -0.10 -2.85 5.03 30.71 0.15 -2.70 16 17 C -0.15 -3.29 5.78 30.69 0.18 -3.11 16 18 C 0.05 1.24 6.84 72.01 0.49 1.74 16 19 O -0.41 -14.67 10.28 -148.98 -1.53 -16.20 16 20 C 0.06 2.21 4.45 72.01 0.32 2.53 16 21 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.06 2.27 7.66 -2.39 -0.02 2.25 16 23 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.06 3.18 5.94 -2.39 -0.01 3.17 16 25 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 27 H 0.33 13.06 8.16 -89.69 -0.73 12.32 16 28 H 0.07 2.14 6.04 -2.38 -0.01 2.13 16 29 H 0.03 1.17 6.36 -2.39 -0.02 1.15 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.07 1.67 6.51 -2.38 -0.02 1.66 16 34 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.07 3.49 6.15 -2.39 -0.01 3.48 16 38 H 0.03 1.32 7.80 -2.39 -0.02 1.30 16 Total: -1.00 -57.86 285.73 1.89 -55.97 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.30 Total: 22.85 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 3.27 Total: -27.51 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -2.18 Total: -80.58 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -1.53 Total: -16.20 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -57.86 1.89 -55.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.986 kcal (2) G-P(sol) polarization free energy of solvation -57.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds