Wall clock time and date at job start Sun Mar 29 2020 21:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47477 * 2 1 4 4 H 1.09004 * 109.46761 * 54.93770 * 3 2 1 5 5 C 1.50695 * 109.47398 * 174.94035 * 3 2 1 6 6 H 1.08010 * 119.99836 * 120.00073 * 5 3 2 7 7 C 1.37872 * 120.00428 * 299.99998 * 5 3 2 8 8 N 1.31512 * 119.99677 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00221 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47331 * 89.99860 * 9 7 5 11 11 H 1.48510 * 109.47136 * 209.99906 * 9 7 5 12 12 H 1.48497 * 109.47364 * 329.99673 * 9 7 5 13 13 N 1.46898 * 109.46810 * 294.94300 * 3 2 1 14 14 C 1.46903 * 111.00006 * 143.05242 * 13 3 2 15 15 C 1.52996 * 109.51996 * 56.09605 * 14 13 3 16 16 C 1.53181 * 109.51986 * 176.21659 * 14 13 3 17 17 C 1.53185 * 109.03274 * 176.88713 * 16 14 13 18 18 C 1.53090 * 109.16275 * 303.01898 * 17 16 14 19 19 O 1.42903 * 109.41537 * 57.60950 * 18 17 16 20 20 C 1.42904 * 114.09993 * 298.84258 * 19 18 17 21 21 H 1.09003 * 109.46899 * 64.37979 * 1 2 3 22 22 H 1.08992 * 109.47567 * 304.37820 * 1 2 3 23 23 H 1.09005 * 109.47228 * 184.37327 * 1 2 3 24 24 H 1.09001 * 109.47296 * 119.99769 * 2 1 3 25 25 H 1.09003 * 109.47568 * 239.99740 * 2 1 3 26 26 H 0.96997 * 120.00415 * 180.02562 * 8 7 5 27 27 H 1.00907 * 111.00223 * 19.10128 * 13 3 2 28 28 H 1.08992 * 109.47527 * 65.30758 * 15 14 13 29 29 H 1.09004 * 109.47231 * 185.30985 * 15 14 13 30 30 H 1.09008 * 109.46873 * 305.30049 * 15 14 13 31 31 H 1.08993 * 109.54468 * 296.75146 * 16 14 13 32 32 H 1.08996 * 109.54417 * 57.02532 * 16 14 13 33 33 H 1.09003 * 109.52007 * 62.92671 * 17 16 14 34 34 H 1.09002 * 109.51653 * 183.11212 * 17 16 14 35 35 H 1.08995 * 109.47681 * 177.59211 * 18 17 16 36 36 H 1.08999 * 109.48253 * 297.61151 * 18 17 16 37 37 H 1.09004 * 109.47475 * 301.17557 * 20 19 18 38 38 H 1.08993 * 109.47919 * 181.14089 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6045 1.9818 0.8412 5 6 3.5417 1.4443 0.1253 6 1 4.1478 1.8886 -0.6505 7 6 4.1421 0.8788 1.2301 8 7 3.4041 0.3382 2.1750 9 14 6.0035 0.8817 1.3857 10 1 6.4396 2.1149 2.0888 11 1 6.4375 -0.3091 2.1598 12 1 6.6135 0.8416 0.0324 13 7 1.6526 2.0988 -1.2558 14 6 1.2988 3.5061 -1.0270 15 6 2.4677 4.2233 -0.3487 16 6 0.9924 4.1813 -2.3674 17 6 0.5499 5.6250 -2.1099 18 6 -0.6600 5.6201 -1.1718 19 8 -0.3164 4.9505 0.0430 20 6 0.0601 3.5830 -0.1308 21 1 -0.3633 0.4444 -0.9267 22 1 -0.3634 0.5802 0.8481 23 1 -0.3634 -1.0247 0.0784 24 1 1.8933 -0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 3.8263 -0.0593 2.9525 27 1 0.8959 1.6040 -1.7040 28 1 3.3196 4.2523 -1.0279 29 1 2.1712 5.2409 -0.0941 30 1 2.7449 3.6877 0.5594 31 1 1.8874 4.1797 -2.9895 32 1 0.1935 3.6400 -2.8742 33 1 1.3668 6.1795 -1.6479 34 1 0.2768 6.0961 -3.0542 35 1 -0.9528 6.6464 -0.9510 36 1 -1.4896 5.1006 -1.6513 37 1 -0.7601 3.0366 -0.5966 38 1 0.2858 3.1420 0.8401 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163698.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:50 Heat of formation + Delta-G solvation = -56.962991 kcal Electronic energy + Delta-G solvation = -17311.660510 eV Core-core repulsion = 14767.621203 eV Total energy + Delta-G solvation = -2544.039307 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.57912 -36.37829 -33.72109 -32.12763 -31.31503 -28.55935 -26.98879 -25.78841 -24.73145 -22.98787 -21.82817 -19.48539 -18.38798 -16.32544 -16.21796 -15.54174 -14.84712 -14.71558 -14.41357 -13.78124 -13.43005 -12.98170 -12.66789 -12.32480 -12.25653 -11.96705 -11.40213 -11.22315 -11.01532 -10.88264 -10.79389 -10.69935 -10.58428 -10.40371 -10.02877 -9.81262 -9.63080 -9.43410 -9.38122 -8.90184 -8.30941 -7.15405 -5.93337 -3.95392 3.34546 3.41354 3.45765 4.19033 4.47841 5.01201 5.12662 5.17025 5.34055 5.34467 5.47139 5.57279 5.70203 5.88441 5.97561 6.03679 6.11722 6.13281 6.19030 6.27907 6.39114 6.50235 6.55879 6.67222 6.81642 6.86127 7.07361 7.13060 7.37030 7.42181 7.58786 7.78230 7.96188 8.33799 8.45421 8.75147 9.11554 9.68087 11.11941 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030404 B = 0.009065 C = 0.007918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.698769 B = 3088.199517 C = 3535.553337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.133 4.133 3 C 0.215 3.785 4 H 0.015 0.985 5 C -0.482 4.482 6 H 0.062 0.938 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.672 5.672 14 C 0.092 3.908 15 C -0.128 4.128 16 C -0.108 4.108 17 C -0.155 4.155 18 C 0.060 3.940 19 O -0.382 6.382 20 C 0.035 3.965 21 H 0.033 0.967 22 H 0.042 0.958 23 H 0.037 0.963 24 H 0.101 0.899 25 H 0.040 0.960 26 H 0.258 0.742 27 H 0.317 0.683 28 H 0.052 0.948 29 H 0.042 0.958 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.038 0.962 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.883 6.561 -6.208 11.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.171 4.171 3 C 0.108 3.892 4 H 0.033 0.967 5 C -0.521 4.521 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.304 5.304 14 C 0.000 4.000 15 C -0.186 4.186 16 C -0.146 4.146 17 C -0.193 4.193 18 C -0.017 4.017 19 O -0.300 6.300 20 C -0.044 4.044 21 H 0.052 0.948 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.119 0.881 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.135 0.865 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.204 6.695 -6.029 10.939 hybrid contribution 0.086 -0.379 0.275 0.476 sum -6.117 6.316 -5.755 10.508 Atomic orbital electron populations 1.21908 0.99684 0.99759 0.99456 1.21895 0.91144 1.00906 1.03195 1.19258 0.95559 0.89425 0.84962 0.96746 1.21222 0.91135 1.35482 1.04288 0.92001 1.24953 0.97911 0.95836 0.96032 1.69859 1.34629 1.39645 1.09674 0.86591 0.86115 0.77285 0.77961 1.20921 1.21505 1.20006 1.60919 1.41126 1.00001 1.28337 1.21377 0.93975 0.91404 0.93292 1.21809 0.96324 0.98268 1.02172 1.21621 1.01183 0.94283 0.97481 1.22228 0.99348 0.98109 0.99607 1.22510 0.95638 0.97186 0.86367 1.87911 1.87501 1.24737 1.29807 1.23596 0.96192 0.82060 1.02544 0.94819 0.93844 0.94351 0.88109 0.94156 0.93162 0.86543 0.92900 0.93888 0.89988 0.90988 0.92839 0.90742 0.91602 0.89616 0.93943 0.94404 0.88243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.70 37.15 0.36 -2.49 16 2 C -0.13 -3.04 5.26 -26.73 -0.14 -3.18 16 3 C 0.21 5.11 1.25 -68.87 -0.09 5.02 16 4 H 0.02 0.39 5.19 -51.93 -0.27 0.12 16 5 C -0.48 -12.87 6.92 -34.44 -0.24 -13.11 16 6 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 7 C 0.05 1.43 5.29 -17.82 -0.09 1.34 16 8 N -0.90 -25.14 11.29 55.43 0.63 -24.52 16 9 Si 0.89 21.43 29.54 -169.99 -5.02 16.40 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.67 -13.79 5.95 -94.11 -0.56 -14.35 16 14 C 0.09 1.68 0.69 -131.46 -0.09 1.59 16 15 C -0.13 -2.55 7.34 37.16 0.27 -2.28 16 16 C -0.11 -1.65 5.10 -26.54 -0.14 -1.78 16 17 C -0.15 -2.03 5.77 -26.59 -0.15 -2.18 16 18 C 0.06 0.81 6.84 37.20 0.25 1.06 16 19 O -0.38 -6.58 10.10 -35.23 -0.36 -6.94 16 20 C 0.03 0.62 5.41 37.20 0.20 0.82 16 21 H 0.03 0.57 6.67 -51.93 -0.35 0.22 16 22 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 25 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.32 6.04 6.55 -39.29 -0.26 5.78 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.04 0.78 6.28 -51.93 -0.33 0.46 16 30 H 0.08 1.90 5.69 -51.92 -0.30 1.61 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.02 6.75 -51.93 -0.35 0.67 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 2.02 6.30 -51.93 -0.33 1.69 16 LS Contribution 284.72 15.07 4.29 4.29 Total: -1.00 -27.49 284.72 -7.12 -34.62 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.25 Total: 5.69 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 0.15 Total: -15.19 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.07 Total: -38.86 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.36 Total: -6.94 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.49 -7.12 -34.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163698.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.346 kcal (2) G-P(sol) polarization free energy of solvation -27.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds