Wall clock time and date at job start Sun Mar 29 2020 21:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47477 * 2 1 4 4 H 1.09004 * 109.46761 * 54.93770 * 3 2 1 5 5 C 1.50695 * 109.47398 * 174.94035 * 3 2 1 6 6 H 1.08010 * 119.99836 * 120.00073 * 5 3 2 7 7 C 1.37872 * 120.00428 * 299.99998 * 5 3 2 8 8 N 1.31512 * 119.99677 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00221 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47331 * 89.99860 * 9 7 5 11 11 H 1.48510 * 109.47136 * 209.99906 * 9 7 5 12 12 H 1.48497 * 109.47364 * 329.99673 * 9 7 5 13 13 N 1.46898 * 109.46810 * 294.94300 * 3 2 1 14 14 C 1.46903 * 111.00006 * 143.05242 * 13 3 2 15 15 C 1.52996 * 109.51996 * 56.09605 * 14 13 3 16 16 C 1.53181 * 109.51986 * 176.21659 * 14 13 3 17 17 C 1.53185 * 109.03274 * 176.88713 * 16 14 13 18 18 C 1.53090 * 109.16275 * 303.01898 * 17 16 14 19 19 O 1.42903 * 109.41537 * 57.60950 * 18 17 16 20 20 C 1.42904 * 114.09993 * 298.84258 * 19 18 17 21 21 H 1.09003 * 109.46899 * 64.37979 * 1 2 3 22 22 H 1.08992 * 109.47567 * 304.37820 * 1 2 3 23 23 H 1.09005 * 109.47228 * 184.37327 * 1 2 3 24 24 H 1.09001 * 109.47296 * 119.99769 * 2 1 3 25 25 H 1.09003 * 109.47568 * 239.99740 * 2 1 3 26 26 H 0.96997 * 120.00415 * 180.02562 * 8 7 5 27 27 H 1.00907 * 111.00223 * 19.10128 * 13 3 2 28 28 H 1.08992 * 109.47527 * 65.30758 * 15 14 13 29 29 H 1.09004 * 109.47231 * 185.30985 * 15 14 13 30 30 H 1.09008 * 109.46873 * 305.30049 * 15 14 13 31 31 H 1.08993 * 109.54468 * 296.75146 * 16 14 13 32 32 H 1.08996 * 109.54417 * 57.02532 * 16 14 13 33 33 H 1.09003 * 109.52007 * 62.92671 * 17 16 14 34 34 H 1.09002 * 109.51653 * 183.11212 * 17 16 14 35 35 H 1.08995 * 109.47681 * 177.59211 * 18 17 16 36 36 H 1.08999 * 109.48253 * 297.61151 * 18 17 16 37 37 H 1.09004 * 109.47475 * 301.17557 * 20 19 18 38 38 H 1.08993 * 109.47919 * 181.14089 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6045 1.9818 0.8412 5 6 3.5417 1.4443 0.1253 6 1 4.1478 1.8886 -0.6505 7 6 4.1421 0.8788 1.2301 8 7 3.4041 0.3382 2.1750 9 14 6.0035 0.8817 1.3857 10 1 6.4396 2.1149 2.0888 11 1 6.4375 -0.3091 2.1598 12 1 6.6135 0.8416 0.0324 13 7 1.6526 2.0988 -1.2558 14 6 1.2988 3.5061 -1.0270 15 6 2.4677 4.2233 -0.3487 16 6 0.9924 4.1813 -2.3674 17 6 0.5499 5.6250 -2.1099 18 6 -0.6600 5.6201 -1.1718 19 8 -0.3164 4.9505 0.0430 20 6 0.0601 3.5830 -0.1308 21 1 -0.3633 0.4444 -0.9267 22 1 -0.3634 0.5802 0.8481 23 1 -0.3634 -1.0247 0.0784 24 1 1.8933 -0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 3.8263 -0.0593 2.9525 27 1 0.8959 1.6040 -1.7040 28 1 3.3196 4.2523 -1.0279 29 1 2.1712 5.2409 -0.0941 30 1 2.7449 3.6877 0.5594 31 1 1.8874 4.1797 -2.9895 32 1 0.1935 3.6400 -2.8742 33 1 1.3668 6.1795 -1.6479 34 1 0.2768 6.0961 -3.0542 35 1 -0.9528 6.6464 -0.9510 36 1 -1.4896 5.1006 -1.6513 37 1 -0.7601 3.0366 -0.5966 38 1 0.2858 3.1420 0.8401 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163698.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:49 Heat of formation + Delta-G solvation = -74.879611 kcal Electronic energy + Delta-G solvation = -17312.437433 eV Core-core repulsion = 14767.621203 eV Total energy + Delta-G solvation = -2544.816230 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.95875 -37.98604 -35.30220 -33.86076 -32.81910 -30.13916 -28.76945 -27.41768 -26.01936 -24.77737 -23.14723 -21.24816 -19.80960 -18.31858 -17.60722 -16.90019 -16.66900 -16.17125 -15.76773 -15.52346 -14.83274 -14.65199 -14.23495 -13.80086 -13.59719 -13.51288 -13.08094 -12.83553 -12.80226 -12.64400 -12.46731 -12.22200 -12.09853 -11.85025 -11.69447 -11.46694 -11.39051 -11.05707 -10.98657 -10.45303 -10.35639 -8.85764 -8.00951 -6.09321 1.40922 1.42706 1.52204 2.46514 2.95071 3.24785 3.62025 3.86656 3.95712 4.06975 4.22933 4.26309 4.48318 4.55490 4.56526 4.66795 4.70020 4.77082 4.83844 4.90837 5.03342 5.06185 5.11391 5.16099 5.24579 5.34392 5.36537 5.46616 5.63658 5.68854 5.81113 5.94433 6.26047 6.42517 6.65741 7.01950 7.03098 7.57339 9.01699 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030404 B = 0.009065 C = 0.007918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.698769 B = 3088.199517 C = 3535.553337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.224 3.776 4 H -0.011 1.011 5 C -0.490 4.490 6 H 0.048 0.952 7 C 0.007 3.993 8 N -0.921 5.921 9 Si 0.946 3.054 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.674 5.674 14 C 0.088 3.912 15 C -0.119 4.119 16 C -0.103 4.103 17 C -0.149 4.149 18 C 0.052 3.948 19 O -0.401 6.401 20 C 0.046 3.954 21 H 0.056 0.944 22 H 0.035 0.965 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.035 0.965 26 H 0.257 0.743 27 H 0.328 0.672 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.953 7.526 -7.891 13.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.117 3.883 4 H 0.007 0.993 5 C -0.529 4.529 6 H 0.066 0.934 7 C -0.190 4.190 8 N -0.562 5.562 9 Si 0.773 3.227 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.307 5.307 14 C -0.003 4.003 15 C -0.176 4.176 16 C -0.141 4.141 17 C -0.187 4.187 18 C -0.024 4.024 19 O -0.319 6.319 20 C -0.033 4.033 21 H 0.075 0.925 22 H 0.055 0.945 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.147 0.853 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.128 0.872 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.282 7.672 -7.730 13.101 hybrid contribution 0.398 -0.608 0.772 1.061 sum -6.884 7.063 -6.958 12.070 Atomic orbital electron populations 1.21763 0.96392 1.01098 1.00361 1.21727 0.94119 0.99710 1.01261 1.18967 0.93867 0.89950 0.85563 0.99347 1.21447 0.92848 1.34863 1.03790 0.93419 1.25598 1.01552 0.95896 0.95983 1.69986 1.35868 1.40392 1.09985 0.85734 0.81867 0.77210 0.77860 1.20751 1.21152 1.19718 1.60798 1.42053 1.01186 1.26637 1.21465 0.93433 0.90065 0.95385 1.21673 0.96974 0.98738 1.00217 1.21584 1.01677 0.95678 0.95130 1.22211 0.98906 0.96445 1.01125 1.22833 0.96190 0.98275 0.85150 1.87887 1.87615 1.24127 1.32311 1.23292 0.96342 0.82997 1.00662 0.92469 0.94549 0.92541 0.91436 0.94582 0.93360 0.85341 0.93626 0.92463 0.94083 0.91403 0.91213 0.91625 0.88259 0.87188 0.92296 0.92889 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.08 9.70 71.98 0.70 -4.39 16 2 C -0.13 -5.99 5.26 30.59 0.16 -5.83 16 3 C 0.22 10.90 1.25 44.17 0.06 10.95 16 4 H -0.01 -0.59 5.19 -2.38 -0.01 -0.60 16 5 C -0.49 -26.88 6.92 25.60 0.18 -26.70 16 6 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 7 C 0.01 0.39 5.29 84.65 0.45 0.84 16 8 N -0.92 -53.11 11.29 21.45 0.24 -52.87 16 9 Si 0.95 44.77 29.54 68.60 2.03 46.80 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 13 N -0.67 -27.36 5.95 -451.66 -2.69 -30.05 16 14 C 0.09 3.17 0.69 3.62 0.00 3.17 16 15 C -0.12 -4.77 7.34 71.98 0.53 -4.24 16 16 C -0.10 -2.86 5.10 30.72 0.16 -2.70 16 17 C -0.15 -3.36 5.77 30.69 0.18 -3.19 16 18 C 0.05 1.20 6.84 72.01 0.49 1.69 16 19 O -0.40 -13.15 10.10 -148.98 -1.51 -14.65 16 20 C 0.05 1.61 5.41 72.01 0.39 2.00 16 21 H 0.06 1.81 6.67 -2.39 -0.02 1.79 16 22 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 24 H 0.07 3.60 5.95 -2.39 -0.01 3.59 16 25 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 27 H 0.33 11.94 6.55 -89.69 -0.59 11.36 16 28 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.06 2.08 6.28 -2.39 -0.01 2.07 16 30 H 0.04 1.97 5.69 -2.38 -0.01 1.96 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.07 1.61 6.75 -2.39 -0.02 1.60 16 34 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.07 2.76 6.30 -2.39 -0.02 2.75 16 Total: -1.00 -60.48 284.72 1.81 -58.67 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.44 Total: 20.49 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: 3.29 Total: -28.39 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -2.44 Total: -82.92 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -1.51 Total: -14.65 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -60.48 1.81 -58.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163698.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.213 kcal (2) G-P(sol) polarization free energy of solvation -60.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds