Wall clock time and date at job start Sun Mar 29 2020 21:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46477 * 2 1 4 4 H 1.09003 * 109.47133 * 56.05765 * 3 2 1 5 5 C 1.50701 * 109.46623 * 176.05629 * 3 2 1 6 6 H 1.07999 * 120.00129 * 120.00594 * 5 3 2 7 7 C 1.37879 * 119.99992 * 299.99747 * 5 3 2 8 8 N 1.31516 * 119.99832 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99825 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47214 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46558 * 120.00349 * 9 7 5 12 12 H 1.48495 * 109.47152 * 240.00189 * 9 7 5 13 13 N 1.46900 * 109.47271 * 296.05577 * 3 2 1 14 14 C 1.46894 * 110.99853 * 107.59020 * 13 3 2 15 15 H 1.09007 * 110.05642 * 315.83673 * 14 13 3 16 16 C 1.54260 * 110.03537 * 77.25554 * 14 13 3 17 17 C 1.54893 * 104.19571 * 142.89109 * 16 14 13 18 18 C 1.54887 * 102.75233 * 322.05901 * 17 16 14 19 19 C 1.53875 * 110.03010 * 194.42293 * 14 13 3 20 20 H 1.09009 * 110.03364 * 121.42707 * 19 14 13 21 21 C 1.53003 * 110.03487 * 0.02562 * 19 14 13 22 22 O 1.42902 * 109.47205 * 181.41441 * 21 19 14 23 23 H 1.09010 * 109.47101 * 183.94877 * 1 2 3 24 24 H 1.08998 * 109.47734 * 303.94805 * 1 2 3 25 25 H 1.09007 * 109.47603 * 63.95565 * 1 2 3 26 26 H 1.08997 * 109.47399 * 240.00450 * 2 1 3 27 27 H 1.08995 * 109.47030 * 120.00104 * 2 1 3 28 28 H 0.97002 * 119.99428 * 179.97438 * 8 7 5 29 29 H 1.00900 * 111.00003 * 343.63209 * 13 3 2 30 30 H 1.09004 * 110.48987 * 24.21727 * 16 14 13 31 31 H 1.08996 * 110.48598 * 261.56923 * 16 14 13 32 32 H 1.08999 * 110.75565 * 203.74125 * 17 16 14 33 33 H 1.09004 * 110.91247 * 80.44640 * 17 16 14 34 34 H 1.09000 * 110.48366 * 279.26922 * 18 17 16 35 35 H 1.08994 * 110.59998 * 156.67540 * 18 17 16 36 36 H 1.09007 * 109.46694 * 301.41459 * 21 19 14 37 37 H 1.08996 * 109.47033 * 61.40811 * 21 19 14 38 38 H 0.96702 * 113.99558 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6199 1.9764 0.8526 5 6 3.5437 1.4438 0.0977 6 1 4.1354 1.8932 -0.6860 7 6 4.1642 0.8712 1.1878 8 7 3.4436 0.3235 2.1420 9 14 6.0283 0.8720 1.3085 10 1 6.6013 1.5445 0.1150 11 1 6.4445 1.6001 2.5340 12 1 6.5207 -0.5274 1.3729 13 7 1.6295 2.1070 -1.2442 14 6 0.5625 3.0846 -0.9917 15 1 -0.1841 2.6584 -0.3216 16 6 1.1564 4.3673 -0.3739 17 6 0.3279 5.5127 -1.0070 18 6 0.1202 5.0211 -2.4610 19 6 -0.0963 3.5003 -2.3187 20 1 -1.1627 3.2757 -2.2926 21 6 0.5657 2.7647 -3.4856 22 8 -0.0325 3.1838 -4.7138 23 1 -0.3634 -1.0253 0.0708 24 1 -0.3634 0.5739 0.8524 25 1 -0.3634 0.4512 -0.9233 26 1 1.8934 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.8802 -0.0796 2.9087 29 1 1.3446 1.4318 -1.9377 30 1 2.2091 4.4664 -0.6388 31 1 1.0336 4.3612 0.7091 32 1 0.8873 6.4481 -0.9917 33 1 -0.6289 5.6282 -0.4978 34 1 1.0056 5.2256 -3.0630 35 1 -0.7578 5.4917 -2.9032 36 1 1.6310 2.9953 -3.5030 37 1 0.4286 1.6904 -3.3626 38 1 0.3393 2.7573 -5.4980 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165658.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:06 Heat of formation + Delta-G solvation = -64.558497 kcal Electronic energy + Delta-G solvation = -16885.852739 eV Core-core repulsion = 14341.484066 eV Total energy + Delta-G solvation = -2544.368673 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.90645 -36.16558 -35.16673 -32.13960 -30.58179 -29.58765 -27.29850 -25.33580 -23.97148 -22.66457 -20.45862 -19.56763 -18.50968 -17.22632 -16.17099 -15.63910 -14.90257 -14.55602 -14.27325 -14.07740 -13.45690 -13.10789 -12.82565 -12.52012 -12.00541 -11.66451 -11.31176 -11.08970 -10.79273 -10.68774 -10.61954 -10.57509 -10.50427 -10.29972 -10.16638 -9.92135 -9.71700 -9.67966 -9.58547 -9.00559 -8.30773 -7.16816 -5.94742 -3.97319 3.32480 3.40603 3.45763 4.40746 4.47828 4.98044 5.00085 5.25637 5.34925 5.46767 5.66052 5.71016 5.85998 5.96635 6.03029 6.09827 6.12166 6.14773 6.18801 6.32498 6.37193 6.41417 6.46308 6.65249 6.70152 6.79136 6.93156 7.02058 7.20436 7.46111 7.76316 7.81977 7.94796 8.34576 8.58063 8.65243 9.10903 9.67561 11.11235 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027788 B = 0.007904 C = 0.007445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.373888 B = 3541.830120 C = 3759.941220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.145 4.145 3 C 0.216 3.784 4 H 0.028 0.972 5 C -0.486 4.486 6 H 0.062 0.938 7 C 0.052 3.948 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.680 5.680 14 C 0.092 3.908 15 H 0.036 0.964 16 C -0.108 4.108 17 C -0.128 4.128 18 C -0.103 4.103 19 C -0.090 4.090 20 H 0.066 0.934 21 C 0.085 3.915 22 O -0.582 6.582 23 H 0.035 0.965 24 H 0.043 0.957 25 H 0.031 0.969 26 H 0.035 0.965 27 H 0.100 0.900 28 H 0.258 0.742 29 H 0.321 0.679 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.041 0.959 38 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.340 4.680 -7.776 11.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.185 4.185 3 C 0.109 3.891 4 H 0.046 0.954 5 C -0.525 4.525 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.539 5.539 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.312 5.312 14 C -0.018 4.018 15 H 0.054 0.946 16 C -0.146 4.146 17 C -0.166 4.166 18 C -0.141 4.141 19 C -0.109 4.109 20 H 0.085 0.915 21 C 0.007 3.993 22 O -0.387 6.387 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.118 0.882 28 H 0.068 0.932 29 H 0.141 0.859 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -6.159 5.417 -7.157 10.885 hybrid contribution 0.526 -1.175 0.068 1.289 sum -5.633 4.242 -7.089 9.999 Atomic orbital electron populations 1.21893 0.99588 0.99503 0.99601 1.22189 0.91343 1.01941 1.03003 1.19227 0.95236 0.88640 0.86004 0.95449 1.21286 0.91146 1.35096 1.04979 0.91942 1.24972 0.98075 0.95802 0.95900 1.69882 1.34653 1.39405 1.09936 0.86508 0.85998 0.77435 0.77844 1.19807 1.21287 1.21318 1.61109 1.36996 1.19718 1.13422 1.22102 0.92257 0.94295 0.93194 0.94594 1.22371 1.00628 0.92651 0.98976 1.22520 0.99692 0.98370 0.96008 1.22219 1.01137 0.94283 0.96470 1.21864 0.99185 0.95979 0.93838 0.91533 1.22267 0.97251 0.96668 0.83069 1.86434 1.65364 1.70307 1.16548 0.94585 0.93775 0.94948 0.94623 0.88191 0.93240 0.85941 0.90011 0.92350 0.92024 0.92282 0.91584 0.92450 0.91604 0.94098 0.78085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.84 37.16 0.33 -2.55 16 2 C -0.15 -3.36 5.05 -26.73 -0.13 -3.49 16 3 C 0.22 5.23 1.93 -68.86 -0.13 5.10 16 4 H 0.03 0.74 7.33 -51.93 -0.38 0.36 16 5 C -0.49 -13.17 8.84 -34.44 -0.30 -13.48 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.05 1.44 5.30 -17.82 -0.09 1.34 16 8 N -0.90 -25.40 11.30 55.43 0.63 -24.78 16 9 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.68 -13.77 4.92 -99.78 -0.49 -14.26 16 14 C 0.09 1.66 2.52 -66.60 -0.17 1.49 16 15 H 0.04 0.68 6.98 -51.92 -0.36 0.32 16 16 C -0.11 -1.91 6.04 -25.07 -0.15 -2.06 16 17 C -0.13 -1.84 6.91 -24.74 -0.17 -2.01 16 18 C -0.10 -1.50 6.08 -25.07 -0.15 -1.65 16 19 C -0.09 -1.40 3.22 -89.50 -0.29 -1.68 16 20 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 21 C 0.08 1.25 5.09 37.16 0.19 1.44 16 22 O -0.58 -7.86 13.36 -35.23 -0.47 -8.33 16 23 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 24 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.03 0.57 6.94 -51.92 -0.36 0.21 16 26 H 0.03 0.81 8.09 -51.93 -0.42 0.39 16 27 H 0.10 2.62 5.97 -51.93 -0.31 2.31 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.32 6.13 4.94 -39.29 -0.19 5.93 16 30 H 0.08 1.59 8.05 -51.93 -0.42 1.18 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.98 7.85 -51.93 -0.41 0.57 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 1.04 7.74 -51.92 -0.40 0.63 16 37 H 0.04 0.60 6.72 -51.93 -0.35 0.25 16 38 H 0.37 3.36 9.12 45.56 0.42 3.77 16 LS Contribution 293.09 15.07 4.42 4.42 Total: -1.00 -28.51 293.09 -7.71 -36.22 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -5.69 Total: 7.88 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -1.08 Total: -17.55 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.14 Total: -39.04 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.47 Total: -8.33 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.51 -7.71 -36.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165658.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.334 kcal (2) G-P(sol) polarization free energy of solvation -28.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds