Wall clock time and date at job start Sun Mar 29 2020 21:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46477 * 2 1 4 4 H 1.09003 * 109.47133 * 56.05765 * 3 2 1 5 5 C 1.50701 * 109.46623 * 176.05629 * 3 2 1 6 6 H 1.07999 * 120.00129 * 120.00594 * 5 3 2 7 7 C 1.37879 * 119.99992 * 299.99747 * 5 3 2 8 8 N 1.31516 * 119.99832 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99825 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47214 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46558 * 120.00349 * 9 7 5 12 12 H 1.48495 * 109.47152 * 240.00189 * 9 7 5 13 13 N 1.46900 * 109.47271 * 296.05577 * 3 2 1 14 14 C 1.46894 * 110.99853 * 107.59020 * 13 3 2 15 15 H 1.09007 * 110.05642 * 315.83673 * 14 13 3 16 16 C 1.54260 * 110.03537 * 77.25554 * 14 13 3 17 17 C 1.54893 * 104.19571 * 142.89109 * 16 14 13 18 18 C 1.54887 * 102.75233 * 322.05901 * 17 16 14 19 19 C 1.53875 * 110.03010 * 194.42293 * 14 13 3 20 20 H 1.09009 * 110.03364 * 121.42707 * 19 14 13 21 21 C 1.53003 * 110.03487 * 0.02562 * 19 14 13 22 22 O 1.42902 * 109.47205 * 181.41441 * 21 19 14 23 23 H 1.09010 * 109.47101 * 183.94877 * 1 2 3 24 24 H 1.08998 * 109.47734 * 303.94805 * 1 2 3 25 25 H 1.09007 * 109.47603 * 63.95565 * 1 2 3 26 26 H 1.08997 * 109.47399 * 240.00450 * 2 1 3 27 27 H 1.08995 * 109.47030 * 120.00104 * 2 1 3 28 28 H 0.97002 * 119.99428 * 179.97438 * 8 7 5 29 29 H 1.00900 * 111.00003 * 343.63209 * 13 3 2 30 30 H 1.09004 * 110.48987 * 24.21727 * 16 14 13 31 31 H 1.08996 * 110.48598 * 261.56923 * 16 14 13 32 32 H 1.08999 * 110.75565 * 203.74125 * 17 16 14 33 33 H 1.09004 * 110.91247 * 80.44640 * 17 16 14 34 34 H 1.09000 * 110.48366 * 279.26922 * 18 17 16 35 35 H 1.08994 * 110.59998 * 156.67540 * 18 17 16 36 36 H 1.09007 * 109.46694 * 301.41459 * 21 19 14 37 37 H 1.08996 * 109.47033 * 61.40811 * 21 19 14 38 38 H 0.96702 * 113.99558 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6199 1.9764 0.8526 5 6 3.5437 1.4438 0.0977 6 1 4.1354 1.8932 -0.6860 7 6 4.1642 0.8712 1.1878 8 7 3.4436 0.3235 2.1420 9 14 6.0283 0.8720 1.3085 10 1 6.6013 1.5445 0.1150 11 1 6.4445 1.6001 2.5340 12 1 6.5207 -0.5274 1.3729 13 7 1.6295 2.1070 -1.2442 14 6 0.5625 3.0846 -0.9917 15 1 -0.1841 2.6584 -0.3216 16 6 1.1564 4.3673 -0.3739 17 6 0.3279 5.5127 -1.0070 18 6 0.1202 5.0211 -2.4610 19 6 -0.0963 3.5003 -2.3187 20 1 -1.1627 3.2757 -2.2926 21 6 0.5657 2.7647 -3.4856 22 8 -0.0325 3.1838 -4.7138 23 1 -0.3634 -1.0253 0.0708 24 1 -0.3634 0.5739 0.8524 25 1 -0.3634 0.4512 -0.9233 26 1 1.8934 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.8802 -0.0796 2.9087 29 1 1.3446 1.4318 -1.9377 30 1 2.2091 4.4664 -0.6388 31 1 1.0336 4.3612 0.7091 32 1 0.8873 6.4481 -0.9917 33 1 -0.6289 5.6282 -0.4978 34 1 1.0056 5.2256 -3.0630 35 1 -0.7578 5.4917 -2.9032 36 1 1.6310 2.9953 -3.5030 37 1 0.4286 1.6904 -3.3626 38 1 0.3393 2.7573 -5.4980 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165658.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:06 Heat of formation + Delta-G solvation = -83.899049 kcal Electronic energy + Delta-G solvation = -16886.691409 eV Core-core repulsion = 14341.484066 eV Total energy + Delta-G solvation = -2545.207342 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.28383 -37.53564 -36.63977 -34.10925 -32.18006 -30.89777 -29.03160 -27.00560 -25.23140 -24.48624 -21.94838 -21.17286 -19.91680 -18.59736 -17.97311 -17.07725 -16.53139 -16.22506 -15.66196 -15.35531 -15.12518 -14.73247 -14.30029 -14.02797 -13.43927 -13.33503 -13.10903 -12.81306 -12.57667 -12.32870 -12.07004 -11.92795 -11.91280 -11.79108 -11.64355 -11.51169 -11.44758 -11.27336 -10.96524 -10.74517 -10.40026 -8.87249 -8.04000 -6.14141 1.40768 1.43375 1.54834 2.45819 3.21823 3.30080 3.63249 3.74527 3.90256 4.19813 4.40249 4.45201 4.50706 4.51383 4.60591 4.66328 4.67795 4.73533 4.92448 4.94217 5.03172 5.07223 5.12622 5.18331 5.25476 5.29367 5.39875 5.41644 5.56593 5.63011 5.78028 5.90836 6.38809 6.72456 6.93105 6.96676 7.00702 7.55058 8.99653 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027788 B = 0.007904 C = 0.007445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.373888 B = 3541.830120 C = 3759.941220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.140 4.140 3 C 0.225 3.775 4 H -0.006 1.006 5 C -0.503 4.503 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.922 5.922 9 Si 0.953 3.047 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.282 1.282 13 N -0.678 5.678 14 C 0.091 3.909 15 H 0.027 0.973 16 C -0.111 4.111 17 C -0.117 4.117 18 C -0.098 4.098 19 C -0.087 4.087 20 H 0.075 0.925 21 C 0.093 3.907 22 O -0.587 6.587 23 H 0.054 0.946 24 H 0.035 0.965 25 H 0.050 0.950 26 H 0.036 0.964 27 H 0.067 0.933 28 H 0.258 0.742 29 H 0.329 0.671 30 H 0.057 0.943 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.043 0.957 38 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.001 5.170 -9.112 12.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.180 4.180 3 C 0.117 3.883 4 H 0.012 0.988 5 C -0.542 4.542 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.563 5.563 9 Si 0.780 3.220 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.208 1.208 13 N -0.311 5.311 14 C -0.019 4.019 15 H 0.045 0.955 16 C -0.149 4.149 17 C -0.155 4.155 18 C -0.136 4.136 19 C -0.106 4.106 20 H 0.093 0.907 21 C 0.015 3.985 22 O -0.395 6.395 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.150 0.850 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -6.823 5.907 -8.524 12.414 hybrid contribution 0.720 -1.316 0.456 1.567 sum -6.104 4.591 -8.069 11.110 Atomic orbital electron populations 1.21745 0.96599 1.00837 1.00193 1.22012 0.94012 1.00604 1.01342 1.18940 0.93715 0.89234 0.86450 0.98767 1.21570 0.92862 1.34951 1.04774 0.93065 1.25673 1.02106 0.95600 0.95692 1.70011 1.36113 1.39920 1.10280 0.85575 0.81205 0.77491 0.77731 1.19458 1.21088 1.20792 1.60979 1.38496 1.19812 1.11819 1.22144 0.91426 0.93558 0.94805 0.95499 1.22334 0.99891 0.94397 0.98304 1.22475 0.99836 0.97444 0.95722 1.22190 1.01676 0.93404 0.96310 1.21820 0.99276 0.96937 0.92577 0.90702 1.22040 0.96361 0.96558 0.83562 1.86380 1.65465 1.70735 1.16909 0.92651 0.94600 0.93074 0.94538 0.91472 0.93278 0.85045 0.92399 0.93931 0.90604 0.90827 0.92031 0.90754 0.92919 0.93920 0.75706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.15 8.84 71.98 0.64 -4.52 16 2 C -0.14 -6.52 5.05 30.60 0.15 -6.37 16 3 C 0.23 11.10 1.93 44.17 0.09 11.19 16 4 H -0.01 -0.31 7.33 -2.39 -0.02 -0.33 16 5 C -0.50 -27.79 8.84 25.60 0.23 -27.56 16 6 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 7 C 0.01 0.38 5.30 84.65 0.45 0.83 16 8 N -0.92 -53.21 11.30 21.45 0.24 -52.97 16 9 Si 0.95 44.40 29.54 68.60 2.03 46.42 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 13 N -0.68 -27.50 4.92 -469.60 -2.31 -29.81 16 14 C 0.09 3.23 2.52 45.64 0.11 3.34 16 15 H 0.03 1.01 6.98 -2.38 -0.02 1.00 16 16 C -0.11 -3.93 6.04 31.67 0.19 -3.74 16 17 C -0.12 -3.14 6.91 31.89 0.22 -2.92 16 18 C -0.10 -2.60 6.08 31.67 0.19 -2.41 16 19 C -0.09 -2.54 3.22 -10.07 -0.03 -2.57 16 20 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 21 C 0.09 2.55 5.09 71.98 0.37 2.91 16 22 O -0.59 -14.20 13.36 -148.98 -1.99 -16.19 16 23 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 24 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.05 1.72 6.94 -2.38 -0.02 1.70 16 26 H 0.04 1.65 8.09 -2.39 -0.02 1.63 16 27 H 0.07 3.60 5.97 -2.39 -0.01 3.58 16 28 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 29 H 0.33 12.30 4.94 -89.69 -0.44 11.86 16 30 H 0.06 2.30 8.05 -2.39 -0.02 2.29 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.06 1.69 7.85 -2.39 -0.02 1.67 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 36 H 0.05 1.59 7.74 -2.38 -0.02 1.57 16 37 H 0.04 1.15 6.72 -2.39 -0.02 1.14 16 38 H 0.39 5.95 9.12 -74.06 -0.68 5.28 16 Total: -1.00 -61.13 293.09 0.49 -60.64 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -0.08 Total: 23.72 kcal Atomic # 6 Polarization: -34.41 SS G_CDS: 2.60 Total: -31.81 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -2.07 Total: -82.79 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -1.99 Total: -16.19 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -61.13 0.49 -60.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165658.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.262 kcal (2) G-P(sol) polarization free energy of solvation -61.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds