Wall clock time and date at job start Sun Mar 29 2020 21:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47322 * 2 1 4 4 H 1.08991 * 109.47261 * 54.99936 * 3 2 1 5 5 C 1.50703 * 109.46937 * 174.99714 * 3 2 1 6 6 H 1.08005 * 119.99891 * 119.99724 * 5 3 2 7 7 C 1.37875 * 120.00468 * 299.99956 * 5 3 2 8 8 N 1.31521 * 119.99803 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00381 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47170 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47244 * 119.99974 * 9 7 5 12 12 H 1.48498 * 109.47078 * 239.99842 * 9 7 5 13 13 N 1.46894 * 109.47024 * 294.99477 * 3 2 1 14 14 C 1.47441 * 111.00672 * 295.84528 * 13 3 2 15 15 C 1.54318 * 107.23454 * 236.74539 * 14 13 3 16 16 H 1.08992 * 110.70551 * 96.09478 * 15 14 13 17 17 C 1.53000 * 110.85142 * 219.26044 * 15 14 13 18 18 C 1.55137 * 103.01882 * 337.70862 * 15 14 13 19 19 C 1.47847 * 110.99958 * 175.00085 * 13 3 2 20 20 H 1.08999 * 110.46744 * 27.48625 * 19 13 3 21 21 C 1.53002 * 110.37197 * 265.19673 * 19 13 3 22 22 O 1.42905 * 109.47079 * 298.16990 * 21 19 13 23 23 H 1.08998 * 109.47168 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47485 * 300.00205 * 1 2 3 25 25 H 1.08999 * 109.46851 * 59.99958 * 1 2 3 26 26 H 1.08997 * 109.47328 * 239.99275 * 2 1 3 27 27 H 1.08999 * 109.46851 * 120.00042 * 2 1 3 28 28 H 0.96996 * 120.00070 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.89305 * 117.32975 * 14 13 3 30 30 H 1.09006 * 110.01855 * 356.22359 * 14 13 3 31 31 H 1.08997 * 109.46786 * 173.68401 * 17 15 14 32 32 H 1.09001 * 109.47301 * 293.68341 * 17 15 14 33 33 H 1.09007 * 109.47284 * 53.68319 * 17 15 14 34 34 H 1.09004 * 110.99471 * 277.57123 * 18 15 14 35 35 H 1.08994 * 111.02212 * 153.76009 * 18 15 14 36 36 H 1.09004 * 109.46930 * 178.17216 * 21 19 13 37 37 H 1.09000 * 109.47312 * 58.17160 * 21 19 13 38 38 H 0.96705 * 113.99788 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3365 2.1730 9 14 6.0049 0.8810 1.3819 10 1 6.5988 1.5460 0.1943 11 1 6.3990 1.6165 2.6103 12 1 6.4969 -0.5177 1.4632 13 7 1.6515 2.0992 -1.2552 14 6 2.3020 1.4560 -2.4116 15 6 3.0928 2.5505 -3.1585 16 1 4.1377 2.5506 -2.8482 17 6 2.9803 2.3661 -4.6732 18 6 2.3877 3.8580 -2.7113 19 6 2.0234 3.5300 -1.2418 20 1 2.8829 3.6944 -0.5919 21 6 0.8393 4.3838 -0.7833 22 8 -0.2437 4.2291 -1.7026 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 3.8292 -0.0613 2.9499 29 1 1.5470 1.0283 -3.0713 30 1 2.9815 0.6748 -2.0706 31 1 3.4503 3.2101 -5.1778 32 1 3.4815 1.4432 -4.9651 33 1 1.9288 2.3135 -4.9557 34 1 1.4914 4.0408 -3.3042 35 1 3.0686 4.7074 -2.7645 36 1 1.1389 5.4312 -0.7476 37 1 0.5224 4.0625 0.2089 38 1 -1.0301 4.7435 -1.4741 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166323.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:59 Heat of formation + Delta-G solvation = -59.889958 kcal Electronic energy + Delta-G solvation = -17294.742072 eV Core-core repulsion = 14750.575842 eV Total energy + Delta-G solvation = -2544.166230 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.83942 -35.87892 -34.39511 -31.85987 -31.02906 -29.13385 -26.60211 -25.64622 -24.06645 -22.63644 -20.11248 -19.51645 -18.47214 -16.92708 -16.36452 -15.56076 -14.56185 -14.10311 -13.85212 -13.20018 -13.04332 -12.87279 -12.66067 -12.27631 -12.19320 -11.70841 -11.44528 -11.27907 -11.03674 -10.83879 -10.61362 -10.49742 -10.09632 -10.03643 -9.91105 -9.76586 -9.51454 -9.49378 -9.29079 -8.93689 -8.33964 -7.02340 -5.96598 -4.10124 3.25057 3.34132 3.37023 4.39850 4.88813 5.05719 5.26242 5.27880 5.42025 5.58552 5.83090 5.93309 6.04574 6.11233 6.16851 6.23582 6.39105 6.41589 6.51126 6.52587 6.55146 6.65883 6.76995 6.90024 6.92849 7.11301 7.16922 7.26095 7.42108 7.67827 7.79732 8.06421 8.15274 8.22706 8.40920 8.53064 9.02941 9.57023 11.01712 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.022102 B = 0.010833 C = 0.009364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.577651 B = 2584.052296 C = 2989.450132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 C 0.207 3.793 4 H 0.035 0.965 5 C -0.540 4.540 6 H 0.058 0.942 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.884 3.116 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.511 5.511 14 C 0.060 3.940 15 C -0.115 4.115 16 H 0.069 0.931 17 C -0.135 4.135 18 C -0.114 4.114 19 C 0.074 3.926 20 H 0.077 0.923 21 C 0.095 3.905 22 O -0.557 6.557 23 H 0.023 0.977 24 H 0.036 0.964 25 H 0.050 0.950 26 H 0.031 0.969 27 H 0.090 0.910 28 H 0.260 0.740 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.032 0.968 37 H 0.043 0.957 38 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.250 5.536 -7.035 9.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.148 4.148 3 C 0.100 3.900 4 H 0.052 0.948 5 C -0.579 4.579 6 H 0.076 0.924 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.712 3.288 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.235 5.235 14 C -0.068 4.068 15 C -0.134 4.134 16 H 0.087 0.913 17 C -0.193 4.193 18 C -0.152 4.152 19 C -0.035 4.035 20 H 0.094 0.906 21 C 0.017 3.983 22 O -0.360 6.360 23 H 0.042 0.958 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -3.343 4.973 -7.175 9.348 hybrid contribution 1.668 0.379 0.717 1.855 sum -1.675 5.352 -6.458 8.553 Atomic orbital electron populations 1.21696 0.98876 0.98243 1.00635 1.21574 0.92289 0.99154 1.01749 1.19449 0.92809 0.91296 0.86486 0.94754 1.21864 0.92864 1.37836 1.05350 0.92433 1.24929 0.97647 0.95139 0.95781 1.69893 1.34605 1.38397 1.09424 0.86664 0.86445 0.77725 0.77926 1.19941 1.21092 1.21039 1.63754 1.55484 1.00097 1.04115 1.22643 0.95631 0.96346 0.92196 1.22376 0.99706 0.96389 0.94916 0.91306 1.21705 1.01348 1.00578 0.95667 1.22674 0.99629 0.96264 0.96643 1.22495 0.94526 0.90556 0.95943 0.90557 1.22092 0.87780 0.96365 0.92051 1.86609 1.25249 1.72125 1.51986 0.95780 0.94452 0.93141 0.95036 0.89146 0.93016 0.93018 0.91567 0.93527 0.93192 0.92754 0.90495 0.92802 0.94944 0.93867 0.79454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.80 37.16 0.36 -2.56 16 2 C -0.11 -2.64 5.13 -26.73 -0.14 -2.78 16 3 C 0.21 5.10 1.70 -68.87 -0.12 4.98 16 4 H 0.03 0.95 8.13 -51.93 -0.42 0.52 16 5 C -0.54 -14.23 6.18 -34.44 -0.21 -14.45 16 6 H 0.06 1.53 6.30 -52.48 -0.33 1.19 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.77 11.29 55.43 0.63 -24.15 16 9 Si 0.88 21.01 29.54 -169.99 -5.02 15.99 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.51 -11.06 4.20 -216.85 -0.91 -11.97 16 14 C 0.06 1.23 4.91 -2.84 -0.01 1.21 16 15 C -0.11 -2.03 3.30 -88.80 -0.29 -2.33 16 16 H 0.07 1.29 7.80 -51.93 -0.40 0.89 16 17 C -0.14 -1.98 9.17 37.16 0.34 -1.64 16 18 C -0.11 -1.98 5.88 -24.59 -0.14 -2.12 16 19 C 0.07 1.45 2.53 -66.18 -0.17 1.28 16 20 H 0.08 1.66 6.70 -51.93 -0.35 1.31 16 21 C 0.10 1.63 6.99 37.16 0.26 1.89 16 22 O -0.56 -9.08 12.50 -35.23 -0.44 -9.52 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 1.06 7.75 -51.93 -0.40 0.66 16 26 H 0.03 0.75 6.65 -51.93 -0.35 0.41 16 27 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.05 1.03 7.78 -51.93 -0.40 0.62 16 30 H 0.07 1.50 5.69 -51.93 -0.30 1.20 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.78 8.07 -51.93 -0.42 0.36 16 34 H 0.08 1.34 7.07 -51.93 -0.37 0.98 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.36 4.07 9.12 45.56 0.42 4.49 16 LS Contribution 292.06 15.07 4.40 4.40 Total: -1.00 -28.47 292.06 -7.29 -35.76 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.73 Total: 4.26 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -0.22 Total: -14.78 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: -0.28 Total: -36.12 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -0.44 Total: -9.52 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.47 -7.29 -35.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166323.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.127 kcal (2) G-P(sol) polarization free energy of solvation -28.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds