Wall clock time and date at job start Sun Mar 29 2020 21:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47322 * 2 1 4 4 H 1.08991 * 109.47261 * 54.99936 * 3 2 1 5 5 C 1.50703 * 109.46937 * 174.99714 * 3 2 1 6 6 H 1.08005 * 119.99891 * 119.99724 * 5 3 2 7 7 C 1.37875 * 120.00468 * 299.99956 * 5 3 2 8 8 N 1.31521 * 119.99803 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00381 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47170 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47244 * 119.99974 * 9 7 5 12 12 H 1.48498 * 109.47078 * 239.99842 * 9 7 5 13 13 N 1.46894 * 109.47024 * 294.99477 * 3 2 1 14 14 C 1.47441 * 111.00672 * 295.84528 * 13 3 2 15 15 C 1.54318 * 107.23454 * 236.74539 * 14 13 3 16 16 H 1.08992 * 110.70551 * 96.09478 * 15 14 13 17 17 C 1.53000 * 110.85142 * 219.26044 * 15 14 13 18 18 C 1.55137 * 103.01882 * 337.70862 * 15 14 13 19 19 C 1.47847 * 110.99958 * 175.00085 * 13 3 2 20 20 H 1.08999 * 110.46744 * 27.48625 * 19 13 3 21 21 C 1.53002 * 110.37197 * 265.19673 * 19 13 3 22 22 O 1.42905 * 109.47079 * 298.16990 * 21 19 13 23 23 H 1.08998 * 109.47168 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47485 * 300.00205 * 1 2 3 25 25 H 1.08999 * 109.46851 * 59.99958 * 1 2 3 26 26 H 1.08997 * 109.47328 * 239.99275 * 2 1 3 27 27 H 1.08999 * 109.46851 * 120.00042 * 2 1 3 28 28 H 0.96996 * 120.00070 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.89305 * 117.32975 * 14 13 3 30 30 H 1.09006 * 110.01855 * 356.22359 * 14 13 3 31 31 H 1.08997 * 109.46786 * 173.68401 * 17 15 14 32 32 H 1.09001 * 109.47301 * 293.68341 * 17 15 14 33 33 H 1.09007 * 109.47284 * 53.68319 * 17 15 14 34 34 H 1.09004 * 110.99471 * 277.57123 * 18 15 14 35 35 H 1.08994 * 111.02212 * 153.76009 * 18 15 14 36 36 H 1.09004 * 109.46930 * 178.17216 * 21 19 13 37 37 H 1.09000 * 109.47312 * 58.17160 * 21 19 13 38 38 H 0.96705 * 113.99788 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3365 2.1730 9 14 6.0049 0.8810 1.3819 10 1 6.5988 1.5460 0.1943 11 1 6.3990 1.6165 2.6103 12 1 6.4969 -0.5177 1.4632 13 7 1.6515 2.0992 -1.2552 14 6 2.3020 1.4560 -2.4116 15 6 3.0928 2.5505 -3.1585 16 1 4.1377 2.5506 -2.8482 17 6 2.9803 2.3661 -4.6732 18 6 2.3877 3.8580 -2.7113 19 6 2.0234 3.5300 -1.2418 20 1 2.8829 3.6944 -0.5919 21 6 0.8393 4.3838 -0.7833 22 8 -0.2437 4.2291 -1.7026 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 3.8292 -0.0613 2.9499 29 1 1.5470 1.0283 -3.0713 30 1 2.9815 0.6748 -2.0706 31 1 3.4503 3.2101 -5.1778 32 1 3.4815 1.4432 -4.9651 33 1 1.9288 2.3135 -4.9557 34 1 1.4914 4.0408 -3.3042 35 1 3.0686 4.7074 -2.7645 36 1 1.1389 5.4312 -0.7476 37 1 0.5224 4.0625 0.2089 38 1 -1.0301 4.7435 -1.4741 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166323.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:59 Heat of formation + Delta-G solvation = -79.542222 kcal Electronic energy + Delta-G solvation = -17295.594258 eV Core-core repulsion = 14750.575842 eV Total energy + Delta-G solvation = -2545.018416 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.44682 -37.25947 -36.13659 -33.78615 -32.61417 -30.74781 -28.42170 -27.10446 -25.68917 -24.47195 -21.78037 -21.05583 -20.21035 -18.37113 -18.27001 -17.23674 -16.39416 -15.69305 -15.28332 -14.89488 -14.64462 -14.51760 -14.26788 -13.86135 -13.53055 -13.37735 -13.19683 -12.92630 -12.69032 -12.60210 -12.44476 -12.14399 -11.91109 -11.58088 -11.50910 -11.35534 -11.30276 -11.16834 -10.93839 -10.60224 -10.41921 -8.83824 -8.00598 -6.23344 1.34617 1.38139 1.47237 2.39804 3.16034 3.47572 3.62667 3.87225 4.01891 4.17085 4.50087 4.56880 4.59687 4.63919 4.73492 4.75076 4.79631 4.89457 4.91524 5.03556 5.08962 5.15773 5.20884 5.27176 5.32425 5.41467 5.47133 5.52866 5.61346 5.69839 5.80713 6.08466 6.24091 6.48490 6.68375 7.00838 7.14166 7.47043 8.93430 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.022102 B = 0.010833 C = 0.009364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.577651 B = 2584.052296 C = 2989.450132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.105 4.105 3 C 0.216 3.784 4 H 0.000 1.000 5 C -0.543 4.543 6 H 0.052 0.948 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.944 3.056 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.512 5.512 14 C 0.060 3.940 15 C -0.112 4.112 16 H 0.054 0.946 17 C -0.127 4.127 18 C -0.101 4.101 19 C 0.062 3.938 20 H 0.048 0.952 21 C 0.104 3.896 22 O -0.569 6.569 23 H 0.044 0.956 24 H 0.031 0.969 25 H 0.053 0.947 26 H 0.027 0.973 27 H 0.062 0.938 28 H 0.260 0.740 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.024 0.976 38 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.276 6.510 -8.622 11.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.143 4.143 3 C 0.109 3.891 4 H 0.017 0.983 5 C -0.582 4.582 6 H 0.070 0.930 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.770 3.230 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.235 5.235 14 C -0.069 4.069 15 C -0.131 4.131 16 H 0.072 0.928 17 C -0.185 4.185 18 C -0.139 4.139 19 C -0.047 4.047 20 H 0.066 0.934 21 C 0.025 3.975 22 O -0.375 6.375 23 H 0.063 0.937 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.043 0.957 38 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -3.386 5.965 -8.774 11.137 hybrid contribution 1.630 0.095 1.204 2.028 sum -1.756 6.059 -7.570 9.854 Atomic orbital electron populations 1.21539 0.96491 0.99574 1.00468 1.21434 0.94376 0.98479 1.00058 1.19174 0.91715 0.91322 0.86934 0.98254 1.22059 0.93887 1.37230 1.05056 0.92990 1.25617 1.01578 0.95097 0.95673 1.70017 1.36093 1.39187 1.09856 0.85725 0.81736 0.77622 0.77868 1.19551 1.20763 1.20848 1.63750 1.55503 1.01226 1.03054 1.22640 0.95554 0.96576 0.92096 1.22341 0.98321 0.95533 0.96948 0.92757 1.21639 1.02025 1.01829 0.93002 1.22610 1.00138 0.96596 0.94570 1.22612 0.94978 0.89734 0.97328 0.93368 1.21894 0.87300 0.97256 0.91006 1.86526 1.26152 1.73127 1.51699 0.93690 0.95002 0.92754 0.95385 0.92002 0.93051 0.92273 0.94396 0.91465 0.92622 0.92276 0.89873 0.90841 0.91966 0.95736 0.76708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 9.80 71.98 0.71 -4.51 16 2 C -0.10 -5.19 5.13 30.59 0.16 -5.03 16 3 C 0.22 10.97 1.70 44.17 0.08 11.05 16 4 H 0.00 -0.03 8.13 -2.39 -0.02 -0.05 16 5 C -0.54 -29.32 6.18 25.60 0.16 -29.17 16 6 H 0.05 2.81 6.30 -2.91 -0.02 2.79 16 7 C 0.02 1.09 5.29 84.65 0.45 1.54 16 8 N -0.91 -52.36 11.29 21.45 0.24 -52.12 16 9 Si 0.94 43.68 29.54 68.60 2.03 45.70 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 13 N -0.51 -22.21 4.20 -839.99 -3.53 -25.74 16 14 C 0.06 2.41 4.91 86.65 0.43 2.83 16 15 C -0.11 -3.80 3.30 -9.61 -0.03 -3.83 16 16 H 0.05 1.99 7.80 -2.39 -0.02 1.98 16 17 C -0.13 -3.36 9.17 71.98 0.66 -2.70 16 18 C -0.10 -3.28 5.88 31.98 0.19 -3.10 16 19 C 0.06 2.42 2.53 45.39 0.11 2.53 16 20 H 0.05 2.13 6.70 -2.39 -0.02 2.12 16 21 C 0.10 3.41 6.99 71.98 0.50 3.92 16 22 O -0.57 -17.20 12.50 -148.98 -1.86 -19.06 16 23 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.05 2.24 7.75 -2.39 -0.02 2.22 16 26 H 0.03 1.36 6.65 -2.39 -0.02 1.34 16 27 H 0.06 3.42 5.95 -2.39 -0.01 3.41 16 28 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.06 2.28 7.78 -2.39 -0.02 2.26 16 30 H 0.04 1.73 5.69 -2.38 -0.01 1.72 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.51 8.07 -2.38 -0.02 1.49 16 34 H 0.08 2.63 7.07 -2.39 -0.02 2.62 16 35 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.39 7.62 9.12 -74.05 -0.68 6.94 16 Total: -1.00 -61.42 292.06 0.63 -60.79 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.35 Total: 16.90 kcal Atomic # 6 Polarization: -29.87 SS G_CDS: 3.40 Total: -26.47 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -3.28 Total: -77.86 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -1.86 Total: -19.06 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -61.42 0.63 -60.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166323.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.757 kcal (2) G-P(sol) polarization free energy of solvation -61.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds