Wall clock time and date at job start Sun Mar 29 2020 21:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47081 * 2 1 4 4 H 1.09005 * 109.46778 * 57.00137 * 3 2 1 5 5 C 1.50694 * 109.47070 * 176.99598 * 3 2 1 6 6 H 1.08004 * 119.99885 * 114.65331 * 5 3 2 7 7 C 1.37871 * 120.00329 * 294.65238 * 5 3 2 8 8 N 1.31524 * 119.99989 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00278 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47146 * 60.00136 * 9 7 5 11 11 H 1.48508 * 109.47154 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46967 * 299.99821 * 9 7 5 13 13 N 1.46894 * 109.47379 * 297.00129 * 3 2 1 14 14 C 1.46845 * 111.00118 * 299.62326 * 13 3 2 15 15 C 1.53035 * 109.52962 * 174.16225 * 14 13 3 16 16 H 1.09001 * 109.49960 * 299.23663 * 15 14 13 17 17 O 1.42901 * 109.50699 * 179.16007 * 15 14 13 18 18 C 1.53119 * 109.27781 * 59.17679 * 15 14 13 19 19 C 1.53122 * 109.16094 * 302.35172 * 18 15 14 20 20 C 1.46847 * 111.00115 * 175.41713 * 13 3 2 21 21 H 1.08994 * 109.46252 * 65.81979 * 20 13 3 22 22 C 1.53002 * 109.46020 * 305.85139 * 20 13 3 23 23 H 1.08995 * 109.47160 * 175.31371 * 1 2 3 24 24 H 1.08996 * 109.46748 * 295.31472 * 1 2 3 25 25 H 1.09005 * 109.47077 * 55.31061 * 1 2 3 26 26 H 1.09002 * 109.46943 * 240.00782 * 2 1 3 27 27 H 1.08995 * 109.47353 * 120.00684 * 2 1 3 28 28 H 0.96997 * 120.00054 * 180.02562 * 8 7 5 29 29 H 1.09005 * 109.46422 * 294.18192 * 14 13 3 30 30 H 1.09006 * 109.46464 * 54.15164 * 14 13 3 31 31 H 0.96699 * 113.99548 * 179.97438 * 17 15 14 32 32 H 1.09003 * 109.52054 * 62.25680 * 18 15 14 33 33 H 1.08996 * 109.52145 * 182.44587 * 18 15 14 34 34 H 1.09004 * 109.50030 * 177.59761 * 19 18 15 35 35 H 1.09000 * 109.49783 * 297.66828 * 19 18 15 36 36 H 1.08998 * 109.46954 * 66.66791 * 22 20 13 37 37 H 1.08996 * 109.46922 * 186.66956 * 22 20 13 38 38 H 1.09001 * 109.46981 * 306.66738 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6334 1.9716 0.8619 5 6 3.5452 1.4432 0.0745 6 1 4.1267 1.8187 -0.7546 7 6 4.1799 0.9645 1.2009 8 7 3.4718 0.5077 2.2107 9 14 6.0457 0.9646 1.2929 10 1 6.5476 2.3561 1.1623 11 1 6.4770 0.4038 2.5986 12 1 6.5956 0.1346 0.1912 13 7 1.6105 2.1138 -1.2339 14 6 2.1480 1.4322 -2.4184 15 6 1.5650 2.0674 -3.6827 16 1 0.4804 1.9594 -3.6773 17 8 2.1034 1.4167 -4.8355 18 6 1.9306 3.5539 -3.7164 19 6 1.4012 4.2305 -2.4489 20 6 1.9890 3.5326 -1.2204 21 1 3.0754 3.6188 -1.2388 22 6 1.4469 4.1927 0.0490 23 1 -0.3633 -1.0242 -0.0840 24 1 -0.3633 0.4394 0.9290 25 1 -0.3633 0.5849 -0.8450 26 1 1.8934 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.9183 0.1713 3.0033 29 1 3.2338 1.5283 -2.4312 30 1 1.8773 0.3769 -2.3843 31 1 1.7763 1.7688 -5.6745 32 1 3.0144 3.6615 -3.7612 33 1 1.4808 4.0199 -4.5931 34 1 1.6953 5.2802 -2.4468 35 1 0.3139 4.1573 -2.4245 36 1 1.9541 3.7771 0.9196 37 1 1.6240 5.2672 0.0038 38 1 0.3762 4.0040 0.1278 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166977.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:55 Heat of formation + Delta-G solvation = -61.661185 kcal Electronic energy + Delta-G solvation = -17358.533521 eV Core-core repulsion = 14814.290485 eV Total energy + Delta-G solvation = -2544.243036 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.01804 -36.32410 -34.16137 -31.87507 -30.93752 -30.31052 -26.76029 -25.64586 -23.66759 -22.57304 -20.80477 -19.67500 -18.77434 -16.90743 -16.04104 -15.53404 -14.51231 -14.32034 -14.07481 -13.56186 -13.15797 -12.97316 -12.75533 -12.33621 -11.98729 -11.64579 -11.32213 -11.24445 -11.12318 -10.97109 -10.84273 -10.60572 -10.36002 -10.22198 -9.98192 -9.70981 -9.64956 -9.57819 -9.15519 -9.00062 -8.32589 -7.10446 -5.97619 -4.09001 3.29934 3.34796 3.38262 4.40510 4.43476 5.12507 5.18509 5.28712 5.34008 5.48262 5.69658 5.91360 6.03848 6.18250 6.20623 6.26624 6.29507 6.35250 6.47302 6.48208 6.57583 6.62421 6.69936 6.81676 6.99078 7.01906 7.11826 7.20880 7.36462 7.65024 7.75697 7.94862 7.98265 8.17839 8.35113 8.48571 9.00899 9.58132 11.03270 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023466 B = 0.010091 C = 0.009612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.919023 B = 2774.027794 C = 2912.430693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C 0.213 3.787 4 H 0.053 0.947 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.070 3.930 8 N -0.886 5.886 9 Si 0.884 3.116 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.526 5.526 14 C 0.069 3.931 15 C 0.104 3.896 16 H 0.055 0.945 17 O -0.570 6.570 18 C -0.149 4.149 19 C -0.109 4.109 20 C 0.087 3.913 21 H 0.044 0.956 22 C -0.139 4.139 23 H 0.025 0.975 24 H 0.039 0.961 25 H 0.050 0.950 26 H 0.035 0.965 27 H 0.082 0.918 28 H 0.261 0.739 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.369 0.631 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.042 0.958 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.811 4.969 -8.222 10.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C 0.107 3.893 4 H 0.071 0.929 5 C -0.581 4.581 6 H 0.072 0.928 7 C -0.133 4.133 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.252 5.252 14 C -0.059 4.059 15 C 0.045 3.955 16 H 0.073 0.927 17 O -0.374 6.374 18 C -0.186 4.186 19 C -0.147 4.147 20 C -0.022 4.022 21 H 0.062 0.938 22 C -0.197 4.197 23 H 0.044 0.956 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.215 0.785 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.992 4.511 -7.582 10.137 hybrid contribution 1.756 0.354 -0.285 1.814 sum -3.236 4.865 -7.867 9.799 Atomic orbital electron populations 1.21726 0.98727 0.98558 1.00709 1.21613 0.92397 0.99431 1.01454 1.19347 0.92748 0.90736 0.86480 0.92910 1.21677 0.92763 1.41960 1.01703 0.92786 1.24884 0.97725 0.95017 0.95639 1.69899 1.35038 1.41653 1.05847 0.86785 0.86498 0.78303 0.77199 1.20419 1.21281 1.20333 1.62343 1.58689 1.00893 1.03293 1.21713 0.97893 0.98546 0.87765 1.21937 0.96745 0.90581 0.86235 0.92662 1.86517 1.72120 1.62807 1.15990 1.22275 1.01565 0.96674 0.98136 1.21608 1.00789 0.98178 0.94127 1.21369 0.97774 0.89510 0.93549 0.93816 1.21793 1.01091 0.98262 0.98511 0.95610 0.94199 0.93058 0.94671 0.89968 0.92880 0.93991 0.90505 0.78516 0.91777 0.92770 0.92341 0.91730 0.91144 0.93942 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.84 37.16 0.37 -2.46 16 2 C -0.11 -2.60 5.03 -26.73 -0.13 -2.74 16 3 C 0.21 5.12 1.27 -68.87 -0.09 5.03 16 4 H 0.05 1.39 6.09 -51.93 -0.32 1.07 16 5 C -0.54 -14.38 7.12 -34.45 -0.25 -14.63 16 6 H 0.05 1.47 5.86 -52.48 -0.31 1.16 16 7 C 0.07 1.90 5.31 -17.82 -0.09 1.80 16 8 N -0.89 -24.78 11.71 55.43 0.65 -24.13 16 9 Si 0.88 21.28 29.54 -169.99 -5.02 16.26 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.53 -10.90 3.77 -220.14 -0.83 -11.73 16 14 C 0.07 1.41 4.45 -3.84 -0.02 1.39 16 15 C 0.10 1.72 3.63 -26.65 -0.10 1.62 16 16 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 17 O -0.57 -8.94 13.32 -35.23 -0.47 -9.41 16 18 C -0.15 -2.20 5.63 -26.61 -0.15 -2.35 16 19 C -0.11 -1.68 5.37 -26.65 -0.14 -1.82 16 20 C 0.09 1.66 2.10 -67.72 -0.14 1.51 16 21 H 0.04 0.94 7.05 -51.93 -0.37 0.58 16 22 C -0.14 -2.53 8.53 37.16 0.32 -2.21 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 1.00 7.56 -51.93 -0.39 0.61 16 26 H 0.03 0.83 6.14 -51.93 -0.32 0.51 16 27 H 0.08 2.16 6.45 -51.93 -0.33 1.82 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.04 0.96 6.56 -51.93 -0.34 0.62 16 30 H 0.08 1.65 5.96 -51.93 -0.31 1.34 16 31 H 0.37 3.85 9.08 45.56 0.41 4.27 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.48 6.64 -51.93 -0.34 1.14 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 286.91 15.07 4.32 4.32 Total: -1.00 -28.05 286.91 -7.33 -35.38 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.56 Total: 4.13 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -0.43 Total: -14.84 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: -0.18 Total: -35.86 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.47 Total: -9.41 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.05 -7.33 -35.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166977.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.278 kcal (2) G-P(sol) polarization free energy of solvation -28.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds