Wall clock time and date at job start Sun Mar 29 2020 21:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47081 * 2 1 4 4 H 1.09005 * 109.46778 * 57.00137 * 3 2 1 5 5 C 1.50694 * 109.47070 * 176.99598 * 3 2 1 6 6 H 1.08004 * 119.99885 * 114.65331 * 5 3 2 7 7 C 1.37871 * 120.00329 * 294.65238 * 5 3 2 8 8 N 1.31524 * 119.99989 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00278 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47146 * 60.00136 * 9 7 5 11 11 H 1.48508 * 109.47154 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46967 * 299.99821 * 9 7 5 13 13 N 1.46894 * 109.47379 * 297.00129 * 3 2 1 14 14 C 1.46845 * 111.00118 * 299.62326 * 13 3 2 15 15 C 1.53035 * 109.52962 * 174.16225 * 14 13 3 16 16 H 1.09001 * 109.49960 * 299.23663 * 15 14 13 17 17 O 1.42901 * 109.50699 * 179.16007 * 15 14 13 18 18 C 1.53119 * 109.27781 * 59.17679 * 15 14 13 19 19 C 1.53122 * 109.16094 * 302.35172 * 18 15 14 20 20 C 1.46847 * 111.00115 * 175.41713 * 13 3 2 21 21 H 1.08994 * 109.46252 * 65.81979 * 20 13 3 22 22 C 1.53002 * 109.46020 * 305.85139 * 20 13 3 23 23 H 1.08995 * 109.47160 * 175.31371 * 1 2 3 24 24 H 1.08996 * 109.46748 * 295.31472 * 1 2 3 25 25 H 1.09005 * 109.47077 * 55.31061 * 1 2 3 26 26 H 1.09002 * 109.46943 * 240.00782 * 2 1 3 27 27 H 1.08995 * 109.47353 * 120.00684 * 2 1 3 28 28 H 0.96997 * 120.00054 * 180.02562 * 8 7 5 29 29 H 1.09005 * 109.46422 * 294.18192 * 14 13 3 30 30 H 1.09006 * 109.46464 * 54.15164 * 14 13 3 31 31 H 0.96699 * 113.99548 * 179.97438 * 17 15 14 32 32 H 1.09003 * 109.52054 * 62.25680 * 18 15 14 33 33 H 1.08996 * 109.52145 * 182.44587 * 18 15 14 34 34 H 1.09004 * 109.50030 * 177.59761 * 19 18 15 35 35 H 1.09000 * 109.49783 * 297.66828 * 19 18 15 36 36 H 1.08998 * 109.46954 * 66.66791 * 22 20 13 37 37 H 1.08996 * 109.46922 * 186.66956 * 22 20 13 38 38 H 1.09001 * 109.46981 * 306.66738 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6334 1.9716 0.8619 5 6 3.5452 1.4432 0.0745 6 1 4.1267 1.8187 -0.7546 7 6 4.1799 0.9645 1.2009 8 7 3.4718 0.5077 2.2107 9 14 6.0457 0.9646 1.2929 10 1 6.5476 2.3561 1.1623 11 1 6.4770 0.4038 2.5986 12 1 6.5956 0.1346 0.1912 13 7 1.6105 2.1138 -1.2339 14 6 2.1480 1.4322 -2.4184 15 6 1.5650 2.0674 -3.6827 16 1 0.4804 1.9594 -3.6773 17 8 2.1034 1.4167 -4.8355 18 6 1.9306 3.5539 -3.7164 19 6 1.4012 4.2305 -2.4489 20 6 1.9890 3.5326 -1.2204 21 1 3.0754 3.6188 -1.2388 22 6 1.4469 4.1927 0.0490 23 1 -0.3633 -1.0242 -0.0840 24 1 -0.3633 0.4394 0.9290 25 1 -0.3633 0.5849 -0.8450 26 1 1.8934 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.9183 0.1713 3.0033 29 1 3.2338 1.5283 -2.4312 30 1 1.8773 0.3769 -2.3843 31 1 1.7763 1.7688 -5.6745 32 1 3.0144 3.6615 -3.7612 33 1 1.4808 4.0199 -4.5931 34 1 1.6953 5.2802 -2.4468 35 1 0.3139 4.1573 -2.4245 36 1 1.9541 3.7771 0.9196 37 1 1.6240 5.2672 0.0038 38 1 0.3762 4.0040 0.1278 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166977.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:55 Heat of formation + Delta-G solvation = -81.340322 kcal Electronic energy + Delta-G solvation = -17359.386872 eV Core-core repulsion = 14814.290485 eV Total energy + Delta-G solvation = -2545.096388 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.54554 -37.75046 -35.80443 -33.84438 -32.35283 -31.94109 -28.59963 -27.21274 -25.38256 -24.22578 -22.25575 -21.27376 -20.50785 -18.37765 -17.88123 -17.17366 -16.40513 -15.80492 -15.46999 -15.22370 -14.73592 -14.72822 -14.17518 -13.79951 -13.63854 -13.29296 -13.04572 -13.01048 -12.78686 -12.57371 -12.47993 -12.29097 -12.05257 -11.70504 -11.68148 -11.52319 -11.36021 -11.13514 -10.81667 -10.59415 -10.39479 -8.92912 -8.04495 -6.24128 1.34187 1.35578 1.42414 2.38797 3.04894 3.15955 3.76862 3.90641 4.03757 4.12569 4.33223 4.53353 4.56578 4.63966 4.73442 4.76391 4.85484 4.90045 4.94932 5.05088 5.08618 5.10593 5.18505 5.28831 5.32751 5.41867 5.42920 5.54361 5.54855 5.65416 5.81764 6.02566 6.23685 6.39865 6.70136 6.96079 7.00698 7.45563 8.91880 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023466 B = 0.010091 C = 0.009612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.919023 B = 2774.027794 C = 2912.430693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.106 4.106 3 C 0.219 3.781 4 H 0.029 0.971 5 C -0.548 4.548 6 H 0.040 0.960 7 C 0.025 3.975 8 N -0.909 5.909 9 Si 0.937 3.063 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.279 1.279 13 N -0.516 5.516 14 C 0.071 3.929 15 C 0.113 3.887 16 H 0.070 0.930 17 O -0.586 6.586 18 C -0.143 4.143 19 C -0.100 4.100 20 C 0.080 3.920 21 H 0.011 0.989 22 C -0.131 4.131 23 H 0.045 0.955 24 H 0.036 0.964 25 H 0.060 0.940 26 H 0.027 0.973 27 H 0.051 0.949 28 H 0.261 0.739 29 H 0.006 0.994 30 H 0.059 0.941 31 H 0.395 0.605 32 H 0.048 0.952 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.031 0.969 37 H 0.071 0.929 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.846 6.190 -9.940 13.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.145 4.145 3 C 0.112 3.888 4 H 0.047 0.953 5 C -0.587 4.587 6 H 0.058 0.942 7 C -0.175 4.175 8 N -0.549 5.549 9 Si 0.764 3.236 10 H -0.201 1.201 11 H -0.206 1.206 12 H -0.204 1.204 13 N -0.242 5.242 14 C -0.058 4.058 15 C 0.054 3.946 16 H 0.088 0.912 17 O -0.394 6.394 18 C -0.180 4.180 19 C -0.138 4.138 20 C -0.028 4.028 21 H 0.029 0.971 22 C -0.189 4.189 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.025 0.975 30 H 0.078 0.922 31 H 0.245 0.755 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.050 0.950 37 H 0.090 0.910 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.033 5.747 -9.329 12.509 hybrid contribution 2.092 -0.029 0.214 2.103 sum -3.941 5.718 -9.116 11.460 Atomic orbital electron populations 1.21579 0.95810 1.00050 1.00953 1.21471 0.94959 0.98586 0.99488 1.19105 0.91193 0.91092 0.87418 0.95339 1.21890 0.94341 1.41350 1.01134 0.94215 1.25519 1.01383 0.95051 0.95554 1.70004 1.36283 1.42401 1.06166 0.85936 0.82210 0.78254 0.77191 1.20071 1.20600 1.20438 1.62333 1.57930 1.01758 1.02137 1.21672 0.95960 0.98216 0.89933 1.21714 0.96952 0.91229 0.84666 0.91166 1.86459 1.72558 1.63322 1.17082 1.22240 1.00899 0.95429 0.99478 1.21559 1.01323 0.98915 0.92033 1.21529 0.96251 0.88820 0.96239 0.97119 1.21711 1.00953 0.99736 0.96477 0.93613 0.94439 0.92062 0.95382 0.93073 0.92945 0.97544 0.92242 0.75539 0.93355 0.88691 0.89951 0.90268 0.95005 0.91034 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.03 9.84 71.98 0.71 -4.32 16 2 C -0.11 -5.14 5.03 30.60 0.15 -4.98 16 3 C 0.22 10.87 1.27 44.17 0.06 10.92 16 4 H 0.03 1.57 6.09 -2.38 -0.01 1.55 16 5 C -0.55 -30.22 7.12 25.60 0.18 -30.04 16 6 H 0.04 2.26 5.86 -2.91 -0.02 2.25 16 7 C 0.03 1.40 5.31 84.65 0.45 1.85 16 8 N -0.91 -52.42 11.71 21.45 0.25 -52.17 16 9 Si 0.94 44.70 29.54 68.60 2.03 46.72 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 13 N -0.52 -21.45 3.77 -850.41 -3.20 -24.65 16 14 C 0.07 2.90 4.45 86.33 0.38 3.29 16 15 C 0.11 3.48 3.63 30.65 0.11 3.59 16 16 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 17 O -0.59 -16.97 13.32 -148.98 -1.99 -18.96 16 18 C -0.14 -3.75 5.63 30.67 0.17 -3.57 16 19 C -0.10 -2.76 5.37 30.65 0.16 -2.60 16 20 C 0.08 3.02 2.10 44.94 0.09 3.11 16 21 H 0.01 0.47 7.05 -2.39 -0.02 0.46 16 22 C -0.13 -4.70 8.53 71.98 0.61 -4.09 16 23 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.06 2.29 7.56 -2.38 -0.02 2.28 16 26 H 0.03 1.35 6.14 -2.39 -0.01 1.34 16 27 H 0.05 2.77 6.45 -2.39 -0.02 2.76 16 28 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.01 0.30 6.56 -2.38 -0.02 0.28 16 30 H 0.06 2.59 5.96 -2.38 -0.01 2.58 16 31 H 0.39 6.81 9.08 -74.06 -0.67 6.14 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.03 1.36 6.64 -2.39 -0.02 1.34 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -62.59 286.91 0.54 -62.05 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.36 Total: 13.85 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: 3.09 Total: -26.85 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -2.95 Total: -76.82 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -1.99 Total: -18.96 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -62.59 0.54 -62.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166977.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.295 kcal (2) G-P(sol) polarization free energy of solvation -62.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds