Wall clock time and date at job start Sun Mar 29 2020 21:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46771 * 2 1 4 4 H 1.09001 * 109.47102 * 57.38760 * 3 2 1 5 5 C 1.50698 * 109.47147 * 177.38411 * 3 2 1 6 6 H 1.08001 * 120.00430 * 119.99961 * 5 3 2 7 7 C 1.37877 * 120.00235 * 300.00334 * 5 3 2 8 8 N 1.31518 * 119.99630 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00336 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46815 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46964 * 119.99613 * 9 7 5 12 12 H 1.48498 * 109.47291 * 240.00096 * 9 7 5 13 13 N 1.46903 * 109.47571 * 297.38270 * 3 2 1 14 14 C 1.48567 * 110.99525 * 83.84026 * 13 3 2 15 15 H 1.08989 * 110.51542 * 319.79300 * 14 13 3 16 16 C 1.53001 * 110.40916 * 82.18456 * 14 13 3 17 17 C 1.54377 * 104.59192 * 200.96058 * 14 13 3 18 18 C 1.54265 * 105.06187 * 23.85882 * 17 14 13 19 19 C 1.48723 * 111.01332 * 328.33868 * 13 3 2 20 20 H 1.08995 * 110.39034 * 40.23891 * 19 13 3 21 21 C 1.52996 * 110.50521 * 277.74422 * 19 13 3 22 22 O 1.42898 * 109.47299 * 298.41448 * 21 19 13 23 23 H 1.09010 * 109.46587 * 189.74444 * 1 2 3 24 24 H 1.08991 * 109.47172 * 309.74693 * 1 2 3 25 25 H 1.09000 * 109.47221 * 69.75202 * 1 2 3 26 26 H 1.09002 * 109.47226 * 240.00559 * 2 1 3 27 27 H 1.08996 * 109.47560 * 120.00278 * 2 1 3 28 28 H 0.96999 * 119.99737 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.47397 * 171.55643 * 16 14 13 30 30 H 1.08996 * 109.47124 * 291.56058 * 16 14 13 31 31 H 1.08998 * 109.47079 * 51.55784 * 16 14 13 32 32 H 1.08995 * 110.32977 * 264.96021 * 17 14 13 33 33 H 1.09002 * 110.40713 * 142.79846 * 17 14 13 34 34 H 1.09001 * 110.32337 * 118.89329 * 18 17 14 35 35 H 1.09002 * 110.31970 * 240.99994 * 18 17 14 36 36 H 1.09004 * 109.47215 * 58.41558 * 21 19 13 37 37 H 1.08999 * 109.47065 * 178.40916 * 21 19 13 38 38 H 0.96706 * 114.00095 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6388 1.9697 0.8656 5 6 3.5455 1.4431 0.0648 6 1 4.1200 1.8986 -0.7282 7 6 4.1896 0.8621 1.1365 8 7 3.4900 0.3078 2.1025 9 14 6.0559 0.8622 1.2166 10 1 6.6028 1.5441 0.0161 11 1 6.4989 1.5809 2.4382 12 1 6.5497 -0.5377 1.2593 13 7 1.6026 2.1166 -1.2298 14 6 0.2213 2.6442 -1.0852 15 1 -0.4047 1.9332 -0.5464 16 6 0.2383 3.9929 -0.3629 17 6 -0.2831 2.8158 -2.5341 18 6 0.5645 1.8366 -3.3723 19 6 1.5117 1.1556 -2.3612 20 1 1.0898 0.2094 -2.0229 21 6 2.8899 0.9333 -2.9875 22 8 3.3820 2.1700 -3.5074 23 1 -0.3633 -1.0130 0.1740 24 1 -0.3633 0.6570 0.7901 25 1 -0.3634 0.3557 -0.9642 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.9432 -0.1013 2.8562 29 1 -0.7571 4.4359 -0.3969 30 1 0.5349 3.8452 0.6755 31 1 0.9490 4.6585 -0.8527 32 1 -0.1234 3.8397 -2.8720 33 1 -1.3395 2.5559 -2.6020 34 1 -0.0756 1.0951 -3.8502 35 1 1.1389 2.3799 -4.1226 36 1 3.5774 0.5586 -2.2291 37 1 2.8088 0.2060 -3.7953 38 1 4.2541 2.1039 -3.9200 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255167173.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:33 Heat of formation + Delta-G solvation = -34.646074 kcal Electronic energy + Delta-G solvation = -17634.354818 eV Core-core repulsion = 15091.283245 eV Total energy + Delta-G solvation = -2543.071573 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.32548 -35.69304 -34.09958 -31.67905 -31.03522 -29.49573 -26.91833 -26.21870 -23.19485 -22.76916 -20.68239 -19.36899 -18.47534 -16.83650 -16.21790 -15.43175 -14.55654 -14.17785 -13.96584 -13.37268 -13.30551 -13.11969 -12.51165 -12.15511 -11.92134 -11.48908 -11.38744 -11.18262 -10.93198 -10.82013 -10.70557 -10.46499 -10.28962 -10.05993 -9.98247 -9.85550 -9.66342 -9.38452 -9.11164 -8.78327 -8.27713 -7.00216 -5.95311 -3.96542 3.31353 3.39945 3.44659 4.45341 4.96477 5.02679 5.31006 5.35733 5.49533 5.66538 5.85746 5.98355 6.06228 6.09940 6.15261 6.19324 6.22945 6.27384 6.37442 6.40109 6.47170 6.51798 6.74500 6.78436 6.81007 6.91574 6.92007 7.01080 7.25877 7.46170 7.74437 7.96660 8.21084 8.36955 8.47738 8.68213 9.12523 9.67320 11.11379 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026099 B = 0.011201 C = 0.009684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.579542 B = 2499.179928 C = 2890.583205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.154 4.154 3 C 0.204 3.796 4 H 0.035 0.965 5 C -0.484 4.484 6 H 0.067 0.933 7 C 0.053 3.947 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.477 5.477 14 C 0.035 3.965 15 H 0.063 0.937 16 C -0.130 4.130 17 C -0.116 4.116 18 C -0.120 4.120 19 C 0.055 3.945 20 H 0.076 0.924 21 C 0.089 3.911 22 O -0.555 6.555 23 H 0.033 0.967 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.042 0.958 27 H 0.098 0.902 28 H 0.257 0.743 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.023 0.977 38 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.059 0.725 -7.930 9.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.194 4.194 3 C 0.097 3.903 4 H 0.053 0.947 5 C -0.523 4.523 6 H 0.085 0.915 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.214 1.214 13 N -0.201 5.201 14 C -0.073 4.073 15 H 0.080 0.920 16 C -0.188 4.188 17 C -0.154 4.154 18 C -0.158 4.158 19 C -0.053 4.053 20 H 0.094 0.906 21 C 0.011 3.989 22 O -0.358 6.358 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.116 0.884 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.041 0.959 38 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -5.215 1.288 -7.607 9.313 hybrid contribution 0.956 -1.045 0.227 1.434 sum -4.260 0.243 -7.380 8.525 Atomic orbital electron populations 1.22232 0.99695 0.99537 1.00057 1.22269 0.91469 1.02607 1.03011 1.19465 0.95490 0.88441 0.86923 0.94671 1.21238 0.90775 1.34602 1.05666 0.91470 1.24960 0.98028 0.95888 0.95781 1.69888 1.34694 1.39009 1.10144 0.86535 0.86120 0.77338 0.77977 1.19777 1.21228 1.21390 1.65664 1.18362 1.30631 1.05444 1.23001 0.92541 0.96943 0.94853 0.91989 1.21647 0.99834 0.96714 1.00584 1.22283 0.97727 0.99699 0.95699 1.22275 0.97166 0.97922 0.98404 1.22872 0.93605 0.96596 0.92272 0.90623 1.22141 0.96290 0.84802 0.95639 1.86564 1.37043 1.33053 1.79133 0.94776 0.93415 0.93536 0.93915 0.88359 0.93256 0.93863 0.92837 0.92278 0.91865 0.92952 0.93205 0.90760 0.91222 0.95882 0.79490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 7.87 37.16 0.29 -2.79 16 2 C -0.15 -3.55 4.68 -26.73 -0.13 -3.68 16 3 C 0.20 5.01 1.91 -68.87 -0.13 4.88 16 4 H 0.04 0.97 7.10 -51.93 -0.37 0.60 16 5 C -0.48 -13.05 7.20 -34.44 -0.25 -13.30 16 6 H 0.07 1.87 7.04 -52.49 -0.37 1.50 16 7 C 0.05 1.46 5.30 -17.82 -0.09 1.36 16 8 N -0.90 -25.26 11.30 55.43 0.63 -24.64 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.29 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.48 -10.32 4.58 -207.75 -0.95 -11.27 16 14 C 0.04 0.66 2.22 -66.07 -0.15 0.52 16 15 H 0.06 1.18 4.02 -51.93 -0.21 0.97 16 16 C -0.13 -2.33 9.27 37.16 0.34 -1.99 16 17 C -0.12 -1.90 6.55 -25.35 -0.17 -2.06 16 18 C -0.12 -2.01 6.44 -25.35 -0.16 -2.17 16 19 C 0.06 1.07 1.64 -65.98 -0.11 0.96 16 20 H 0.08 1.48 3.83 -51.93 -0.20 1.28 16 21 C 0.09 1.67 6.30 37.16 0.23 1.91 16 22 O -0.56 -10.26 12.45 -35.23 -0.44 -10.70 16 23 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 24 H 0.05 0.94 7.45 -51.93 -0.39 0.55 16 25 H 0.05 0.84 4.78 -51.93 -0.25 0.59 16 26 H 0.04 0.96 5.88 -51.93 -0.31 0.66 16 27 H 0.10 2.57 6.01 -51.93 -0.31 2.26 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 1.03 7.46 -51.93 -0.39 0.64 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.06 1.01 7.86 -51.93 -0.41 0.61 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.28 7.00 -51.93 -0.36 0.92 16 36 H 0.07 1.48 6.11 -51.93 -0.32 1.16 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.36 5.03 9.12 45.56 0.42 5.44 16 LS Contribution 279.38 15.07 4.21 4.21 Total: -1.00 -28.94 279.38 -7.02 -35.96 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.13 Total: 6.51 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -0.31 Total: -16.37 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: -0.32 Total: -35.90 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -0.44 Total: -10.70 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.94 -7.02 -35.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167173.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.314 kcal (2) G-P(sol) polarization free energy of solvation -28.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds