Wall clock time and date at job start Sun Mar 29 2020 21:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46771 * 2 1 4 4 H 1.09001 * 109.47102 * 57.38760 * 3 2 1 5 5 C 1.50698 * 109.47147 * 177.38411 * 3 2 1 6 6 H 1.08001 * 120.00430 * 119.99961 * 5 3 2 7 7 C 1.37877 * 120.00235 * 300.00334 * 5 3 2 8 8 N 1.31518 * 119.99630 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00336 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46815 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46964 * 119.99613 * 9 7 5 12 12 H 1.48498 * 109.47291 * 240.00096 * 9 7 5 13 13 N 1.46903 * 109.47571 * 297.38270 * 3 2 1 14 14 C 1.48567 * 110.99525 * 83.84026 * 13 3 2 15 15 H 1.08989 * 110.51542 * 319.79300 * 14 13 3 16 16 C 1.53001 * 110.40916 * 82.18456 * 14 13 3 17 17 C 1.54377 * 104.59192 * 200.96058 * 14 13 3 18 18 C 1.54265 * 105.06187 * 23.85882 * 17 14 13 19 19 C 1.48723 * 111.01332 * 328.33868 * 13 3 2 20 20 H 1.08995 * 110.39034 * 40.23891 * 19 13 3 21 21 C 1.52996 * 110.50521 * 277.74422 * 19 13 3 22 22 O 1.42898 * 109.47299 * 298.41448 * 21 19 13 23 23 H 1.09010 * 109.46587 * 189.74444 * 1 2 3 24 24 H 1.08991 * 109.47172 * 309.74693 * 1 2 3 25 25 H 1.09000 * 109.47221 * 69.75202 * 1 2 3 26 26 H 1.09002 * 109.47226 * 240.00559 * 2 1 3 27 27 H 1.08996 * 109.47560 * 120.00278 * 2 1 3 28 28 H 0.96999 * 119.99737 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.47397 * 171.55643 * 16 14 13 30 30 H 1.08996 * 109.47124 * 291.56058 * 16 14 13 31 31 H 1.08998 * 109.47079 * 51.55784 * 16 14 13 32 32 H 1.08995 * 110.32977 * 264.96021 * 17 14 13 33 33 H 1.09002 * 110.40713 * 142.79846 * 17 14 13 34 34 H 1.09001 * 110.32337 * 118.89329 * 18 17 14 35 35 H 1.09002 * 110.31970 * 240.99994 * 18 17 14 36 36 H 1.09004 * 109.47215 * 58.41558 * 21 19 13 37 37 H 1.08999 * 109.47065 * 178.40916 * 21 19 13 38 38 H 0.96706 * 114.00095 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6388 1.9697 0.8656 5 6 3.5455 1.4431 0.0648 6 1 4.1200 1.8986 -0.7282 7 6 4.1896 0.8621 1.1365 8 7 3.4900 0.3078 2.1025 9 14 6.0559 0.8622 1.2166 10 1 6.6028 1.5441 0.0161 11 1 6.4989 1.5809 2.4382 12 1 6.5497 -0.5377 1.2593 13 7 1.6026 2.1166 -1.2298 14 6 0.2213 2.6442 -1.0852 15 1 -0.4047 1.9332 -0.5464 16 6 0.2383 3.9929 -0.3629 17 6 -0.2831 2.8158 -2.5341 18 6 0.5645 1.8366 -3.3723 19 6 1.5117 1.1556 -2.3612 20 1 1.0898 0.2094 -2.0229 21 6 2.8899 0.9333 -2.9875 22 8 3.3820 2.1700 -3.5074 23 1 -0.3633 -1.0130 0.1740 24 1 -0.3633 0.6570 0.7901 25 1 -0.3634 0.3557 -0.9642 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.9432 -0.1013 2.8562 29 1 -0.7571 4.4359 -0.3969 30 1 0.5349 3.8452 0.6755 31 1 0.9490 4.6585 -0.8527 32 1 -0.1234 3.8397 -2.8720 33 1 -1.3395 2.5559 -2.6020 34 1 -0.0756 1.0951 -3.8502 35 1 1.1389 2.3799 -4.1226 36 1 3.5774 0.5586 -2.2291 37 1 2.8088 0.2060 -3.7953 38 1 4.2541 2.1039 -3.9200 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167173.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:33 Heat of formation + Delta-G solvation = -55.578262 kcal Electronic energy + Delta-G solvation = -17635.262506 eV Core-core repulsion = 15091.283245 eV Total energy + Delta-G solvation = -2543.979261 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.89618 -37.15798 -35.86688 -33.59932 -32.48712 -31.11975 -28.52207 -27.99323 -24.90985 -24.31596 -22.36992 -20.84518 -20.12731 -18.38019 -18.16590 -17.09855 -16.27290 -15.87296 -15.49502 -14.92823 -14.81679 -14.77603 -14.11786 -13.72701 -13.44216 -13.16185 -13.02301 -12.88885 -12.76918 -12.41747 -12.38436 -12.14770 -11.86888 -11.75967 -11.61814 -11.39080 -11.23516 -11.00555 -10.80273 -10.55917 -10.30917 -8.66782 -8.03835 -6.11486 1.39019 1.42268 1.53218 2.45355 3.22683 3.46370 3.66881 3.89755 4.12186 4.32466 4.40712 4.43055 4.52221 4.60597 4.66530 4.71845 4.76378 4.82183 4.88699 4.98076 5.04579 5.05925 5.11583 5.25143 5.32307 5.33181 5.45179 5.53304 5.54090 5.65878 5.81020 5.95229 6.37078 6.63000 6.81996 7.02762 7.14926 7.56411 9.01095 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026099 B = 0.011201 C = 0.009684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.579542 B = 2499.179928 C = 2890.583205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.213 3.787 4 H -0.004 1.004 5 C -0.492 4.492 6 H 0.053 0.947 7 C 0.008 3.992 8 N -0.922 5.922 9 Si 0.950 3.050 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.281 1.281 13 N -0.494 5.494 14 C 0.026 3.974 15 H 0.062 0.938 16 C -0.125 4.125 17 C -0.109 4.109 18 C -0.112 4.112 19 C 0.047 3.953 20 H 0.074 0.926 21 C 0.092 3.908 22 O -0.570 6.570 23 H 0.051 0.949 24 H 0.039 0.961 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.257 0.743 29 H 0.076 0.924 30 H 0.027 0.973 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.036 0.964 37 H 0.054 0.946 38 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.991 0.665 -9.680 11.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.185 4.185 3 C 0.106 3.894 4 H 0.014 0.986 5 C -0.531 4.531 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.563 5.563 9 Si 0.777 3.223 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.207 1.207 13 N -0.218 5.218 14 C -0.082 4.082 15 H 0.080 0.920 16 C -0.183 4.183 17 C -0.147 4.147 18 C -0.150 4.150 19 C -0.061 4.061 20 H 0.091 0.909 21 C 0.014 3.986 22 O -0.376 6.376 23 H 0.070 0.930 24 H 0.058 0.942 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -6.140 1.234 -9.378 11.277 hybrid contribution 1.255 -0.991 0.747 1.765 sum -4.886 0.243 -8.631 9.921 Atomic orbital electron populations 1.22087 0.96769 1.00624 1.00829 1.22061 0.94054 1.01078 1.01320 1.19144 0.94100 0.89065 0.87134 0.98634 1.21437 0.92329 1.34141 1.05190 0.92839 1.25637 1.01925 0.95796 0.95603 1.70021 1.36064 1.39706 1.10545 0.85623 0.81500 0.77434 0.77751 1.19412 1.21293 1.20747 1.65590 1.20527 1.31055 1.04676 1.23147 0.91147 0.96917 0.96987 0.92034 1.21617 1.01381 0.96541 0.98760 1.22265 0.99203 0.99960 0.93240 1.22239 0.96865 0.98381 0.97526 1.23000 0.94724 0.96252 0.92170 0.90894 1.22054 0.95346 0.85441 0.95779 1.86506 1.38592 1.33192 1.79276 0.92977 0.94202 0.91628 0.93696 0.91812 0.93362 0.90557 0.95345 0.93365 0.91527 0.90042 0.90421 0.91203 0.94569 0.92766 0.77356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.53 7.87 71.98 0.57 -4.96 16 2 C -0.15 -6.78 4.68 30.59 0.14 -6.64 16 3 C 0.21 10.74 1.91 44.17 0.08 10.83 16 4 H 0.00 -0.24 7.10 -2.39 -0.02 -0.26 16 5 C -0.49 -27.25 7.20 25.60 0.18 -27.07 16 6 H 0.05 3.05 7.04 -2.91 -0.02 3.03 16 7 C 0.01 0.43 5.30 84.65 0.45 0.88 16 8 N -0.92 -53.39 11.30 21.45 0.24 -53.14 16 9 Si 0.95 44.50 29.54 68.60 2.03 46.53 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 N -0.49 -21.23 4.58 -811.19 -3.71 -24.95 16 14 C 0.03 0.95 2.22 45.06 0.10 1.05 16 15 H 0.06 2.24 4.02 -2.39 -0.01 2.23 16 16 C -0.13 -4.41 9.27 71.98 0.67 -3.74 16 17 C -0.11 -3.18 6.55 31.49 0.21 -2.97 16 18 C -0.11 -3.38 6.44 31.49 0.20 -3.18 16 19 C 0.05 1.73 1.64 45.03 0.07 1.81 16 20 H 0.07 2.72 3.83 -2.39 -0.01 2.71 16 21 C 0.09 3.33 6.30 71.98 0.45 3.78 16 22 O -0.57 -20.31 12.45 -148.98 -1.85 -22.16 16 23 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 24 H 0.04 1.55 7.45 -2.39 -0.02 1.53 16 25 H 0.07 2.22 4.78 -2.39 -0.01 2.21 16 26 H 0.04 2.03 5.88 -2.39 -0.01 2.02 16 27 H 0.06 3.42 6.01 -2.39 -0.01 3.41 16 28 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.03 1.10 7.46 -2.39 -0.02 1.08 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.07 1.91 7.86 -2.39 -0.02 1.90 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.07 2.19 7.00 -2.39 -0.02 2.17 16 36 H 0.04 1.54 6.11 -2.38 -0.01 1.53 16 37 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.38 10.04 9.12 -74.05 -0.68 9.37 16 Total: -1.00 -63.17 279.38 0.21 -62.96 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.38 Total: 20.98 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: 3.13 Total: -30.21 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -3.47 Total: -78.09 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -1.85 Total: -22.16 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -63.17 0.21 -62.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167173.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.381 kcal (2) G-P(sol) polarization free energy of solvation -63.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds