Wall clock time and date at job start Sun Mar 29 2020 21:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52996 * 109.47182 * 2 1 4 4 H 1.08997 * 109.47556 * 303.23063 * 3 2 1 5 5 C 1.50707 * 109.47235 * 183.23100 * 3 2 1 6 6 H 1.07999 * 119.99805 * 240.00052 * 5 3 2 7 7 C 1.37871 * 119.99905 * 60.00252 * 5 3 2 8 8 N 1.31520 * 120.00077 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99991 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47330 * 59.99753 * 9 7 5 11 11 H 1.48506 * 109.47330 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47210 * 300.00001 * 9 7 5 13 13 N 1.46899 * 109.47178 * 63.23359 * 3 2 1 14 14 C 1.44305 * 111.00233 * 63.64421 * 13 3 2 15 15 C 1.53981 * 108.31301 * 221.35088 * 14 13 3 16 16 C 1.45879 * 112.66735 * 278.59216 * 15 14 13 17 17 C 1.54520 * 111.67012 * 61.50165 * 16 15 14 18 18 C 1.50536 * 108.96392 * 282.70462 * 17 16 15 19 19 H 1.09005 * 108.79066 * 330.92037 * 18 17 16 20 20 O 1.42895 * 108.79138 * 212.70675 * 18 17 16 21 21 C 1.47943 * 111.00384 * 191.05608 * 13 3 2 22 22 H 1.09000 * 109.47641 * 54.76238 * 1 2 3 23 23 H 1.09004 * 109.47459 * 174.76214 * 1 2 3 24 24 H 1.08999 * 109.47343 * 294.75658 * 1 2 3 25 25 H 1.09007 * 109.46931 * 240.00372 * 2 1 3 26 26 H 1.08997 * 109.47155 * 120.00402 * 2 1 3 27 27 H 0.96999 * 119.99832 * 180.02562 * 8 7 5 28 28 H 1.09005 * 109.69321 * 101.64007 * 14 13 3 29 29 H 1.09003 * 109.69257 * 341.06029 * 14 13 3 30 30 H 1.09000 * 108.83735 * 157.77283 * 15 14 13 31 31 H 1.08998 * 108.75645 * 39.36078 * 15 14 13 32 32 H 1.09003 * 109.04368 * 300.93205 * 16 15 14 33 33 H 1.09003 * 109.03587 * 182.06448 * 16 15 14 34 34 H 1.08998 * 109.57251 * 42.58001 * 17 16 15 35 35 H 1.08997 * 109.57089 * 162.83478 * 17 16 15 36 36 H 0.96699 * 114.00371 * 60.00050 * 20 18 17 37 37 H 1.08998 * 108.70578 * 313.18011 * 21 13 3 38 38 H 1.09004 * 108.70946 * 71.18725 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6301 1.9728 -0.8596 5 6 3.5449 1.4432 -0.0801 6 1 4.1273 1.8958 0.7087 7 6 4.1780 0.8661 -1.1604 8 7 3.4686 0.3154 -2.1212 9 14 6.0433 0.8664 -1.2593 10 1 6.6013 0.1436 -0.0882 11 1 6.4728 0.1903 -2.5097 12 1 6.5388 2.2664 -1.2589 13 7 1.6151 2.1120 1.2366 14 6 2.2091 1.4868 2.3936 15 6 1.1395 1.3972 3.4977 16 6 0.9857 2.6470 4.2342 17 6 0.5308 3.8004 3.3121 18 6 1.7129 4.2860 2.5165 19 1 2.6199 4.1184 3.0975 20 8 1.5690 5.6892 2.2881 21 6 1.8566 3.5696 1.1602 22 1 -0.3634 0.5929 -0.8393 23 1 -0.3634 -1.0234 -0.0938 24 1 -0.3634 0.4303 0.9332 25 1 1.8932 -0.5138 -0.8901 26 1 1.8932 -0.5139 0.8899 27 1 3.9141 -0.0909 -2.8810 28 1 3.0496 2.0859 2.7440 29 1 2.5538 0.4859 2.1338 30 1 1.4201 0.6090 4.1964 31 1 0.1846 1.1381 3.0404 32 1 1.9401 2.9111 4.6897 33 1 0.2443 2.5071 5.0209 34 1 -0.2435 3.4419 2.6337 35 1 0.1371 4.6175 3.9165 36 1 1.5256 6.2170 3.0972 37 1 2.8646 3.7375 0.7810 38 1 1.1449 4.0057 0.4592 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255167297.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:29 Heat of formation + Delta-G solvation = -58.791404 kcal Electronic energy + Delta-G solvation = -17261.197313 eV Core-core repulsion = 14717.078720 eV Total energy + Delta-G solvation = -2544.118593 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.00698 -36.45134 -34.62959 -32.28806 -31.19746 -30.01911 -26.96738 -24.82589 -24.55493 -22.63148 -20.21708 -19.85497 -18.64960 -17.19037 -16.23184 -15.52715 -14.90609 -14.51950 -14.03622 -13.42510 -13.30212 -12.91553 -12.83728 -12.50413 -12.14050 -11.99252 -11.56353 -11.18523 -10.94956 -10.84249 -10.71559 -10.41992 -10.27220 -10.21214 -9.98767 -9.87130 -9.58011 -9.47716 -9.36381 -9.05214 -8.35112 -7.04762 -5.97698 -4.11233 3.28427 3.33660 3.36319 4.34343 4.41010 4.97623 5.17601 5.24674 5.32425 5.52844 5.64697 5.71508 5.80603 6.05880 6.15106 6.30921 6.38574 6.43289 6.46721 6.49868 6.53949 6.66604 6.70898 6.77688 6.83463 6.97977 7.15711 7.20625 7.40073 7.62746 7.79162 7.91503 8.02967 8.18646 8.36635 8.55920 8.98737 9.56210 11.01231 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026095 B = 0.009578 C = 0.008272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.733022 B = 2922.771144 C = 3383.948477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C 0.218 3.782 4 H 0.037 0.963 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.536 5.536 14 C 0.070 3.930 15 C -0.121 4.121 16 C -0.108 4.108 17 C -0.140 4.140 18 C 0.107 3.893 19 H 0.042 0.958 20 O -0.572 6.572 21 C 0.075 3.925 22 H 0.039 0.961 23 H 0.024 0.976 24 H 0.046 0.954 25 H 0.092 0.908 26 H 0.034 0.966 27 H 0.262 0.738 28 H 0.025 0.975 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.371 0.629 37 H 0.046 0.954 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.390 3.722 9.934 11.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.148 4.148 3 C 0.112 3.888 4 H 0.055 0.945 5 C -0.582 4.582 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.262 5.262 14 C -0.059 4.059 15 C -0.159 4.159 16 C -0.145 4.145 17 C -0.177 4.177 18 C 0.049 3.951 19 H 0.060 0.940 20 O -0.377 6.377 21 C -0.053 4.053 22 H 0.058 0.942 23 H 0.043 0.957 24 H 0.065 0.935 25 H 0.110 0.890 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.837 3.378 9.163 10.898 hybrid contribution 1.991 0.264 0.438 2.056 sum -2.846 3.642 9.601 10.656 Atomic orbital electron populations 1.21703 0.98835 0.98305 1.00568 1.21627 0.92252 0.98974 1.01961 1.19303 0.92626 0.90870 0.85969 0.94480 1.21726 0.92684 1.37676 1.06160 0.92856 1.24905 0.97877 0.95059 0.95555 1.69864 1.35004 1.37751 1.09699 0.86745 0.86261 0.78196 0.77322 1.20363 1.21233 1.20395 1.61127 1.60008 1.00465 1.04579 1.21641 0.93440 1.00221 0.90574 1.20617 1.01436 0.96312 0.97550 1.20489 1.00262 0.96093 0.97673 1.22050 0.99458 0.97844 0.98396 1.21696 0.96103 0.80210 0.97120 0.94019 1.86494 1.96792 1.18468 1.35925 1.21969 1.00997 0.88751 0.93596 0.94207 0.95672 0.93496 0.88956 0.94701 0.92828 0.95620 0.90303 0.93313 0.91363 0.93131 0.92927 0.90134 0.92625 0.78331 0.93581 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.72 37.15 0.36 -2.39 16 2 C -0.11 -2.56 5.09 -26.74 -0.14 -2.69 16 3 C 0.22 5.32 1.70 -68.86 -0.12 5.21 16 4 H 0.04 1.02 8.07 -51.93 -0.42 0.60 16 5 C -0.54 -14.44 6.83 -34.44 -0.24 -14.68 16 6 H 0.05 1.43 6.92 -52.49 -0.36 1.07 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 8 N -0.88 -24.77 11.30 55.43 0.63 -24.15 16 9 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 N -0.54 -11.12 3.42 -227.95 -0.78 -11.90 16 14 C 0.07 1.35 3.96 -4.70 -0.02 1.33 16 15 C -0.12 -1.89 5.38 -29.59 -0.16 -2.04 16 16 C -0.11 -1.46 5.35 -29.30 -0.16 -1.62 16 17 C -0.14 -1.99 5.31 -27.16 -0.14 -2.14 16 18 C 0.11 1.76 2.92 -27.41 -0.08 1.68 16 19 H 0.04 0.68 6.67 -51.93 -0.35 0.34 16 20 O -0.57 -8.85 13.22 -35.23 -0.47 -9.32 16 21 C 0.07 1.51 4.94 -2.70 -0.01 1.50 16 22 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.90 7.44 -51.93 -0.39 0.51 16 25 H 0.09 2.42 5.99 -51.92 -0.31 2.10 16 26 H 0.03 0.79 6.17 -51.93 -0.32 0.47 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.03 0.50 6.68 -51.93 -0.35 0.15 16 29 H 0.08 1.66 5.40 -51.93 -0.28 1.38 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.12 7.66 -51.93 -0.40 0.72 16 32 H 0.05 0.67 7.59 -51.93 -0.39 0.27 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.29 7.78 -51.93 -0.40 0.88 16 35 H 0.06 0.67 7.85 -51.93 -0.41 0.26 16 36 H 0.37 3.84 8.91 45.56 0.41 4.24 16 37 H 0.05 1.05 6.96 -51.93 -0.36 0.69 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 284.40 15.07 4.29 4.29 Total: -1.00 -27.89 284.40 -7.73 -35.62 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.58 Total: 3.40 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -0.79 Total: -14.08 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: -0.15 Total: -36.05 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.47 Total: -9.32 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.89 -7.73 -35.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167297.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.174 kcal (2) G-P(sol) polarization free energy of solvation -27.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds