Wall clock time and date at job start Sun Mar 29 2020 21:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52996 * 109.47182 * 2 1 4 4 H 1.08997 * 109.47556 * 303.23063 * 3 2 1 5 5 C 1.50707 * 109.47235 * 183.23100 * 3 2 1 6 6 H 1.07999 * 119.99805 * 240.00052 * 5 3 2 7 7 C 1.37871 * 119.99905 * 60.00252 * 5 3 2 8 8 N 1.31520 * 120.00077 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99991 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47330 * 59.99753 * 9 7 5 11 11 H 1.48506 * 109.47330 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47210 * 300.00001 * 9 7 5 13 13 N 1.46899 * 109.47178 * 63.23359 * 3 2 1 14 14 C 1.44305 * 111.00233 * 63.64421 * 13 3 2 15 15 C 1.53981 * 108.31301 * 221.35088 * 14 13 3 16 16 C 1.45879 * 112.66735 * 278.59216 * 15 14 13 17 17 C 1.54520 * 111.67012 * 61.50165 * 16 15 14 18 18 C 1.50536 * 108.96392 * 282.70462 * 17 16 15 19 19 H 1.09005 * 108.79066 * 330.92037 * 18 17 16 20 20 O 1.42895 * 108.79138 * 212.70675 * 18 17 16 21 21 C 1.47943 * 111.00384 * 191.05608 * 13 3 2 22 22 H 1.09000 * 109.47641 * 54.76238 * 1 2 3 23 23 H 1.09004 * 109.47459 * 174.76214 * 1 2 3 24 24 H 1.08999 * 109.47343 * 294.75658 * 1 2 3 25 25 H 1.09007 * 109.46931 * 240.00372 * 2 1 3 26 26 H 1.08997 * 109.47155 * 120.00402 * 2 1 3 27 27 H 0.96999 * 119.99832 * 180.02562 * 8 7 5 28 28 H 1.09005 * 109.69321 * 101.64007 * 14 13 3 29 29 H 1.09003 * 109.69257 * 341.06029 * 14 13 3 30 30 H 1.09000 * 108.83735 * 157.77283 * 15 14 13 31 31 H 1.08998 * 108.75645 * 39.36078 * 15 14 13 32 32 H 1.09003 * 109.04368 * 300.93205 * 16 15 14 33 33 H 1.09003 * 109.03587 * 182.06448 * 16 15 14 34 34 H 1.08998 * 109.57251 * 42.58001 * 17 16 15 35 35 H 1.08997 * 109.57089 * 162.83478 * 17 16 15 36 36 H 0.96699 * 114.00371 * 60.00050 * 20 18 17 37 37 H 1.08998 * 108.70578 * 313.18011 * 21 13 3 38 38 H 1.09004 * 108.70946 * 71.18725 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6301 1.9728 -0.8596 5 6 3.5449 1.4432 -0.0801 6 1 4.1273 1.8958 0.7087 7 6 4.1780 0.8661 -1.1604 8 7 3.4686 0.3154 -2.1212 9 14 6.0433 0.8664 -1.2593 10 1 6.6013 0.1436 -0.0882 11 1 6.4728 0.1903 -2.5097 12 1 6.5388 2.2664 -1.2589 13 7 1.6151 2.1120 1.2366 14 6 2.2091 1.4868 2.3936 15 6 1.1395 1.3972 3.4977 16 6 0.9857 2.6470 4.2342 17 6 0.5308 3.8004 3.3121 18 6 1.7129 4.2860 2.5165 19 1 2.6199 4.1184 3.0975 20 8 1.5690 5.6892 2.2881 21 6 1.8566 3.5696 1.1602 22 1 -0.3634 0.5929 -0.8393 23 1 -0.3634 -1.0234 -0.0938 24 1 -0.3634 0.4303 0.9332 25 1 1.8932 -0.5138 -0.8901 26 1 1.8932 -0.5139 0.8899 27 1 3.9141 -0.0909 -2.8810 28 1 3.0496 2.0859 2.7440 29 1 2.5538 0.4859 2.1338 30 1 1.4201 0.6090 4.1964 31 1 0.1846 1.1381 3.0404 32 1 1.9401 2.9111 4.6897 33 1 0.2443 2.5071 5.0209 34 1 -0.2435 3.4419 2.6337 35 1 0.1371 4.6175 3.9165 36 1 1.5256 6.2170 3.0972 37 1 2.8646 3.7375 0.7810 38 1 1.1449 4.0057 0.4592 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167297.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:29 Heat of formation + Delta-G solvation = -77.836498 kcal Electronic energy + Delta-G solvation = -17262.023171 eV Core-core repulsion = 14717.078720 eV Total energy + Delta-G solvation = -2544.944451 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.47810 -37.95273 -36.06717 -34.15968 -32.95250 -31.41032 -28.82083 -26.49783 -26.00405 -24.42485 -21.66654 -21.28859 -20.40474 -18.48152 -18.24100 -17.17388 -16.34419 -16.31032 -15.56151 -14.97894 -14.83210 -14.46876 -14.18371 -14.01993 -13.78953 -13.42353 -13.24548 -13.11759 -12.77848 -12.60384 -12.36227 -12.12535 -11.81109 -11.63054 -11.58961 -11.31302 -11.19205 -11.11941 -10.96455 -10.74191 -10.43394 -8.85737 -8.03342 -6.26895 1.36167 1.37028 1.44324 2.38525 2.98430 3.14491 3.62580 3.97922 4.07977 4.20034 4.30496 4.39973 4.43663 4.60102 4.70978 4.77587 4.90251 4.92454 4.97820 4.99893 5.13446 5.22355 5.26306 5.33578 5.44291 5.45548 5.47459 5.55957 5.61698 5.64480 5.82299 6.09194 6.22411 6.39540 6.77657 6.93722 6.97224 7.43781 8.90601 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026095 B = 0.009578 C = 0.008272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.733022 B = 2922.771144 C = 3383.948477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.223 3.777 4 H -0.003 1.003 5 C -0.552 4.552 6 H 0.045 0.955 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.945 3.055 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.279 1.279 13 N -0.526 5.526 14 C 0.070 3.930 15 C -0.111 4.111 16 C -0.106 4.106 17 C -0.134 4.134 18 C 0.118 3.882 19 H 0.045 0.955 20 O -0.587 6.587 21 C 0.075 3.925 22 H 0.029 0.971 23 H 0.045 0.955 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.037 0.963 27 H 0.262 0.738 28 H 0.019 0.981 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.396 0.604 37 H 0.010 0.990 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.821 4.008 12.276 13.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.141 4.141 3 C 0.116 3.884 4 H 0.015 0.985 5 C -0.591 4.591 6 H 0.063 0.937 7 C -0.178 4.178 8 N -0.548 5.548 9 Si 0.771 3.229 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.205 1.205 13 N -0.251 5.251 14 C -0.059 4.059 15 C -0.149 4.149 16 C -0.143 4.143 17 C -0.171 4.171 18 C 0.060 3.940 19 H 0.063 0.937 20 O -0.395 6.395 21 C -0.053 4.053 22 H 0.048 0.952 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.246 0.754 37 H 0.029 0.971 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.274 3.678 11.538 13.208 hybrid contribution 2.129 0.233 -0.306 2.164 sum -3.145 3.911 11.232 12.302 Atomic orbital electron populations 1.21566 0.96214 0.99609 1.00805 1.21442 0.94529 0.97634 1.00499 1.19084 0.91413 0.91480 0.86398 0.98530 1.21949 0.93970 1.37277 1.05951 0.93704 1.25607 1.01913 0.94947 0.95382 1.69993 1.36434 1.38348 1.10070 0.85818 0.81471 0.78030 0.77563 1.19617 1.20696 1.20457 1.61123 1.59582 1.00670 1.03723 1.21708 0.94758 0.98463 0.90946 1.20527 0.99406 0.98436 0.96532 1.20483 1.01670 0.94381 0.97800 1.21999 0.97690 0.99199 0.98243 1.21447 0.97569 0.80575 0.94456 0.93705 1.86437 1.96813 1.18134 1.38164 1.21948 0.98299 0.88851 0.96229 0.95158 0.93554 0.92222 0.91999 0.94447 0.92867 0.96255 0.92512 0.91355 0.91924 0.92269 0.89963 0.91887 0.89412 0.75407 0.97136 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.97 9.72 71.98 0.70 -4.27 16 2 C -0.10 -4.88 5.09 30.59 0.16 -4.72 16 3 C 0.22 11.32 1.70 44.17 0.08 11.39 16 4 H 0.00 -0.19 8.07 -2.39 -0.02 -0.21 16 5 C -0.55 -30.35 6.83 25.60 0.17 -30.17 16 6 H 0.04 2.48 6.92 -2.91 -0.02 2.46 16 7 C 0.02 1.20 5.30 84.65 0.45 1.65 16 8 N -0.91 -52.42 11.30 21.45 0.24 -52.18 16 9 Si 0.95 44.11 29.54 68.60 2.03 46.13 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 N -0.53 -22.17 3.42 -875.11 -2.99 -25.16 16 14 C 0.07 2.65 3.96 87.12 0.34 2.99 16 15 C -0.11 -3.16 5.38 28.74 0.15 -3.00 16 16 C -0.11 -2.46 5.35 28.93 0.15 -2.31 16 17 C -0.13 -3.39 5.31 30.31 0.16 -3.23 16 18 C 0.12 3.70 2.92 30.15 0.09 3.79 16 19 H 0.05 1.39 6.67 -2.38 -0.02 1.37 16 20 O -0.59 -17.06 13.22 -148.98 -1.97 -19.03 16 21 C 0.08 3.11 4.94 86.46 0.43 3.54 16 22 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 24 H 0.06 2.21 7.44 -2.39 -0.02 2.19 16 25 H 0.06 3.34 5.99 -2.38 -0.01 3.32 16 26 H 0.04 1.73 6.17 -2.39 -0.01 1.71 16 27 H 0.26 14.44 8.31 -92.71 -0.77 13.66 16 28 H 0.02 0.74 6.68 -2.38 -0.02 0.73 16 29 H 0.06 2.39 5.40 -2.39 -0.01 2.38 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.06 1.88 7.66 -2.39 -0.02 1.86 16 32 H 0.06 1.31 7.59 -2.39 -0.02 1.30 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.06 1.86 7.78 -2.39 -0.02 1.84 16 35 H 0.09 1.71 7.85 -2.39 -0.02 1.69 16 36 H 0.40 6.94 8.91 -74.06 -0.66 6.28 16 37 H 0.01 0.49 6.96 -2.39 -0.02 0.48 16 38 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 Total: -1.00 -61.89 284.40 0.56 -61.33 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.37 Total: 13.25 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: 2.88 Total: -24.35 kcal Atomic # 7 Polarization: -74.59 SS G_CDS: -2.75 Total: -77.34 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -1.97 Total: -19.03 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -61.89 0.56 -61.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167297.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.503 kcal (2) G-P(sol) polarization free energy of solvation -61.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds