Wall clock time and date at job start Sun Mar 29 2020 21:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47306 * 2 1 4 4 H 1.09001 * 109.47475 * 177.31137 * 3 2 1 5 5 C 1.50706 * 109.47155 * 297.31790 * 3 2 1 6 6 H 1.08002 * 120.00153 * 119.99736 * 5 3 2 7 7 C 1.37873 * 119.99540 * 299.99574 * 5 3 2 8 8 N 1.31519 * 120.00152 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 120.00139 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47345 * 89.99888 * 9 7 5 11 11 H 1.48508 * 109.46963 * 209.99599 * 9 7 5 12 12 H 1.48499 * 109.47293 * 329.99445 * 9 7 5 13 13 N 1.46909 * 109.47012 * 57.31250 * 3 2 1 14 14 C 1.44273 * 110.99755 * 59.85645 * 13 3 2 15 15 C 1.54066 * 111.98027 * 219.30529 * 14 13 3 16 16 C 1.54287 * 112.29047 * 318.91836 * 15 14 13 17 17 C 1.50459 * 113.03376 * 318.29851 * 16 15 14 18 18 C 1.54510 * 108.85227 * 92.15314 * 17 16 15 19 19 H 1.09007 * 109.05230 * 43.35398 * 18 17 16 20 20 O 1.42899 * 108.99850 * 162.29860 * 18 17 16 21 21 C 1.45859 * 111.59460 * 282.81155 * 18 17 16 22 22 H 1.08998 * 109.46763 * 55.24228 * 1 2 3 23 23 H 1.08998 * 109.47116 * 295.24304 * 1 2 3 24 24 H 1.09001 * 109.46777 * 175.24226 * 1 2 3 25 25 H 1.09005 * 109.46934 * 120.00022 * 2 1 3 26 26 H 1.09003 * 109.47135 * 239.99755 * 2 1 3 27 27 H 0.97000 * 120.00532 * 180.02562 * 8 7 5 28 28 H 1.08997 * 108.97822 * 339.95250 * 14 13 3 29 29 H 1.09000 * 108.97769 * 98.66394 * 14 13 3 30 30 H 1.08995 * 108.91730 * 198.18935 * 15 14 13 31 31 H 1.09006 * 108.83836 * 79.58862 * 15 14 13 32 32 H 1.09004 * 108.77263 * 197.38458 * 16 15 14 33 33 H 1.09001 * 108.77391 * 79.21892 * 16 15 14 34 34 H 1.09006 * 109.57575 * 332.34722 * 17 16 15 35 35 H 1.08994 * 109.57805 * 211.96775 * 17 16 15 36 36 H 0.96694 * 114.00526 * 302.05744 * 20 18 17 37 37 H 1.09004 * 108.79031 * 300.43785 * 21 18 17 38 38 H 1.08998 * 108.79827 * 182.21619 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1290 1.4429 0.0482 5 6 1.5927 2.1335 -1.2624 6 1 0.9684 3.0128 -1.2045 7 6 1.9807 1.6430 -2.4912 8 7 1.5908 2.2462 -3.5929 9 14 3.0601 0.1217 -2.5912 10 1 2.2036 -1.0896 -2.6559 11 1 3.9068 0.1948 -3.8091 12 1 3.9281 0.0506 -1.3884 13 7 1.4981 2.1535 1.1657 14 6 1.9042 1.5162 2.3947 15 6 0.7708 1.5009 3.4382 16 6 -0.0118 2.8301 3.4718 17 6 0.8776 4.0396 3.3730 18 6 1.0111 4.4412 1.8870 19 1 0.0308 4.3844 1.4136 20 8 1.4891 5.7856 1.8096 21 6 1.9351 3.5654 1.1752 22 1 -0.3633 0.5859 -0.8443 23 1 -0.3633 0.4382 0.9295 24 1 -0.3633 -1.0242 -0.0852 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8634 1.9010 -4.4574 28 1 2.2025 0.4901 2.1802 29 1 2.7584 2.0533 2.8070 30 1 1.2000 1.3184 4.4234 31 1 0.0819 0.6911 3.1977 32 1 -0.5735 2.8830 4.4045 33 1 -0.7160 2.8436 2.6399 34 1 1.8619 3.8031 3.7772 35 1 0.4381 4.8631 3.9358 36 1 0.9266 6.4297 2.2609 37 1 2.9140 3.6268 1.6508 38 1 2.0251 3.9121 0.1457 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255167299.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:33 Heat of formation + Delta-G solvation = -43.141678 kcal Electronic energy + Delta-G solvation = -17389.547095 eV Core-core repulsion = 14846.107125 eV Total energy + Delta-G solvation = -2543.439970 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.23358 -36.58429 -34.53889 -32.31794 -31.58493 -30.34644 -27.29463 -25.41903 -24.15971 -22.85053 -20.56599 -19.92055 -18.66629 -17.10764 -16.32811 -15.76865 -15.08124 -14.51659 -14.35029 -13.56121 -13.42099 -13.22444 -13.03632 -12.68741 -12.18464 -12.06013 -11.92674 -11.37710 -11.03588 -10.98613 -10.68264 -10.56305 -10.26404 -10.15980 -10.10298 -9.89282 -9.86149 -9.34676 -9.33413 -8.90960 -8.53631 -7.37833 -6.06062 -4.03441 3.26707 3.36592 3.38442 4.25899 4.40305 5.02656 5.08838 5.24369 5.32363 5.36028 5.54374 5.65027 5.73800 5.96159 5.98980 6.07558 6.09887 6.12677 6.19381 6.35339 6.38551 6.49960 6.53763 6.63033 6.67789 6.75104 6.80776 6.97195 7.03738 7.16413 7.44271 7.61304 7.98527 8.00321 8.10170 8.67154 9.00594 9.55956 11.06559 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030048 B = 0.010235 C = 0.008551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.631117 B = 2735.132877 C = 3273.515042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C 0.187 3.813 4 H -0.003 1.003 5 C -0.499 4.499 6 H 0.083 0.917 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.881 3.119 10 H -0.278 1.278 11 H -0.297 1.297 12 H -0.270 1.270 13 N -0.503 5.503 14 C 0.043 3.957 15 C -0.106 4.106 16 C -0.106 4.106 17 C -0.144 4.144 18 C 0.117 3.883 19 H 0.060 0.940 20 O -0.572 6.572 21 C 0.055 3.945 22 H 0.070 0.930 23 H 0.053 0.947 24 H 0.021 0.979 25 H 0.035 0.965 26 H 0.047 0.953 27 H 0.263 0.737 28 H 0.065 0.935 29 H 0.028 0.972 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.371 0.629 37 H 0.026 0.974 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.705 0.039 13.050 13.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.159 4.159 3 C 0.080 3.920 4 H 0.015 0.985 5 C -0.538 4.538 6 H 0.101 0.899 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.712 3.288 10 H -0.205 1.205 11 H -0.225 1.225 12 H -0.195 1.195 13 N -0.229 5.229 14 C -0.086 4.086 15 C -0.144 4.144 16 C -0.144 4.144 17 C -0.182 4.182 18 C 0.058 3.942 19 H 0.078 0.922 20 O -0.376 6.376 21 C -0.073 4.073 22 H 0.089 0.911 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.217 0.783 37 H 0.044 0.956 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.733 -0.266 12.458 12.581 hybrid contribution 1.028 -0.683 0.243 1.258 sum -0.705 -0.949 12.701 12.756 Atomic orbital electron populations 1.21480 0.95247 0.98485 1.03038 1.21926 0.97708 0.97924 0.98314 1.19770 0.92385 0.90531 0.89325 0.98524 1.20886 1.31948 1.13254 0.87663 0.89865 1.24887 0.95641 0.96732 0.95714 1.69878 1.45618 1.40467 0.97608 0.86949 0.80873 0.84021 0.76937 1.20458 1.22515 1.19482 1.61231 1.59728 1.00440 1.01455 1.22030 0.95422 0.99612 0.91545 1.21929 0.97868 0.97342 0.97285 1.21059 0.98360 0.93883 1.01097 1.22065 1.00628 0.98005 0.97470 1.20748 0.98243 0.81479 0.93701 0.92242 1.86517 1.54328 1.17514 1.79271 1.20687 0.94644 0.89016 1.02925 0.91074 0.92795 0.95962 0.94659 0.93467 0.92656 0.91668 0.95387 0.93228 0.92133 0.93462 0.91161 0.91927 0.92523 0.78308 0.95629 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 9.52 37.16 0.35 -2.19 16 2 C -0.12 -2.61 4.87 -26.73 -0.13 -2.74 16 3 C 0.19 4.35 1.25 -68.86 -0.09 4.26 16 4 H 0.00 -0.07 7.20 -51.93 -0.37 -0.44 16 5 C -0.50 -13.57 6.90 -34.44 -0.24 -13.81 16 6 H 0.08 2.48 7.12 -52.49 -0.37 2.11 16 7 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 8 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 9 Si 0.88 21.86 24.39 -169.99 -4.15 17.71 16 10 H -0.28 -6.72 6.85 56.52 0.39 -6.33 16 11 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.27 -6.47 6.53 56.52 0.37 -6.10 16 13 N -0.50 -10.08 3.29 -232.93 -0.77 -10.84 16 14 C 0.04 0.74 4.88 -4.67 -0.02 0.71 16 15 C -0.11 -1.50 6.14 -25.50 -0.16 -1.66 16 16 C -0.11 -1.45 5.42 -27.33 -0.15 -1.60 16 17 C -0.14 -1.98 5.22 -27.21 -0.14 -2.12 16 18 C 0.12 1.96 3.18 -29.32 -0.09 1.87 16 19 H 0.06 1.05 7.59 -51.93 -0.39 0.65 16 20 O -0.57 -9.20 13.25 -35.23 -0.47 -9.67 16 21 C 0.05 1.10 4.25 -6.71 -0.03 1.07 16 22 H 0.07 1.64 7.15 -51.93 -0.37 1.27 16 23 H 0.05 1.02 7.41 -51.93 -0.38 0.64 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.03 0.68 6.12 -51.93 -0.32 0.36 16 26 H 0.05 1.09 3.23 -51.93 -0.17 0.92 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.07 1.12 5.39 -51.93 -0.28 0.84 16 29 H 0.03 0.47 6.51 -51.93 -0.34 0.13 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.86 7.86 -51.93 -0.41 0.45 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 1.06 7.38 -51.93 -0.38 0.68 16 34 H 0.06 0.90 7.15 -51.93 -0.37 0.53 16 35 H 0.06 0.66 8.07 -51.93 -0.42 0.24 16 36 H 0.37 4.05 9.00 45.56 0.41 4.46 16 37 H 0.03 0.51 7.24 -51.93 -0.38 0.13 16 38 H 0.10 2.37 5.93 -51.93 -0.31 2.06 16 LS Contribution 275.55 15.07 4.15 4.15 Total: -1.00 -29.62 275.55 -6.55 -36.16 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.31 Total: 3.02 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -0.79 Total: -14.26 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.01 Total: -37.12 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -0.47 Total: -9.67 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.15 Total: 17.71 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.62 -6.55 -36.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167299.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.977 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds