Wall clock time and date at job start Sun Mar 29 2020 21:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47306 * 2 1 4 4 H 1.09001 * 109.47475 * 177.31137 * 3 2 1 5 5 C 1.50706 * 109.47155 * 297.31790 * 3 2 1 6 6 H 1.08002 * 120.00153 * 119.99736 * 5 3 2 7 7 C 1.37873 * 119.99540 * 299.99574 * 5 3 2 8 8 N 1.31519 * 120.00152 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 120.00139 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47345 * 89.99888 * 9 7 5 11 11 H 1.48508 * 109.46963 * 209.99599 * 9 7 5 12 12 H 1.48499 * 109.47293 * 329.99445 * 9 7 5 13 13 N 1.46909 * 109.47012 * 57.31250 * 3 2 1 14 14 C 1.44273 * 110.99755 * 59.85645 * 13 3 2 15 15 C 1.54066 * 111.98027 * 219.30529 * 14 13 3 16 16 C 1.54287 * 112.29047 * 318.91836 * 15 14 13 17 17 C 1.50459 * 113.03376 * 318.29851 * 16 15 14 18 18 C 1.54510 * 108.85227 * 92.15314 * 17 16 15 19 19 H 1.09007 * 109.05230 * 43.35398 * 18 17 16 20 20 O 1.42899 * 108.99850 * 162.29860 * 18 17 16 21 21 C 1.45859 * 111.59460 * 282.81155 * 18 17 16 22 22 H 1.08998 * 109.46763 * 55.24228 * 1 2 3 23 23 H 1.08998 * 109.47116 * 295.24304 * 1 2 3 24 24 H 1.09001 * 109.46777 * 175.24226 * 1 2 3 25 25 H 1.09005 * 109.46934 * 120.00022 * 2 1 3 26 26 H 1.09003 * 109.47135 * 239.99755 * 2 1 3 27 27 H 0.97000 * 120.00532 * 180.02562 * 8 7 5 28 28 H 1.08997 * 108.97822 * 339.95250 * 14 13 3 29 29 H 1.09000 * 108.97769 * 98.66394 * 14 13 3 30 30 H 1.08995 * 108.91730 * 198.18935 * 15 14 13 31 31 H 1.09006 * 108.83836 * 79.58862 * 15 14 13 32 32 H 1.09004 * 108.77263 * 197.38458 * 16 15 14 33 33 H 1.09001 * 108.77391 * 79.21892 * 16 15 14 34 34 H 1.09006 * 109.57575 * 332.34722 * 17 16 15 35 35 H 1.08994 * 109.57805 * 211.96775 * 17 16 15 36 36 H 0.96694 * 114.00526 * 302.05744 * 20 18 17 37 37 H 1.09004 * 108.79031 * 300.43785 * 21 18 17 38 38 H 1.08998 * 108.79827 * 182.21619 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1290 1.4429 0.0482 5 6 1.5927 2.1335 -1.2624 6 1 0.9684 3.0128 -1.2045 7 6 1.9807 1.6430 -2.4912 8 7 1.5908 2.2462 -3.5929 9 14 3.0601 0.1217 -2.5912 10 1 2.2036 -1.0896 -2.6559 11 1 3.9068 0.1948 -3.8091 12 1 3.9281 0.0506 -1.3884 13 7 1.4981 2.1535 1.1657 14 6 1.9042 1.5162 2.3947 15 6 0.7708 1.5009 3.4382 16 6 -0.0118 2.8301 3.4718 17 6 0.8776 4.0396 3.3730 18 6 1.0111 4.4412 1.8870 19 1 0.0308 4.3844 1.4136 20 8 1.4891 5.7856 1.8096 21 6 1.9351 3.5654 1.1752 22 1 -0.3633 0.5859 -0.8443 23 1 -0.3633 0.4382 0.9295 24 1 -0.3633 -1.0242 -0.0852 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8634 1.9010 -4.4574 28 1 2.2025 0.4901 2.1802 29 1 2.7584 2.0533 2.8070 30 1 1.2000 1.3184 4.4234 31 1 0.0819 0.6911 3.1977 32 1 -0.5735 2.8830 4.4045 33 1 -0.7160 2.8436 2.6399 34 1 1.8619 3.8031 3.7772 35 1 0.4381 4.8631 3.9358 36 1 0.9266 6.4297 2.2609 37 1 2.9140 3.6268 1.6508 38 1 2.0251 3.9121 0.1457 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167299.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:32 Heat of formation + Delta-G solvation = -65.610170 kcal Electronic energy + Delta-G solvation = -17390.521402 eV Core-core repulsion = 14846.107125 eV Total energy + Delta-G solvation = -2544.414277 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.69435 -38.07295 -35.98185 -34.17790 -33.26924 -31.72826 -29.10908 -26.96132 -25.54151 -24.63103 -22.14662 -21.34466 -20.11280 -18.68641 -18.17996 -17.41641 -16.62837 -16.01832 -15.83700 -15.16655 -14.98061 -14.75102 -14.66884 -14.26991 -13.87535 -13.39971 -13.18913 -13.04027 -12.76985 -12.53080 -12.43152 -12.10160 -12.04745 -11.62393 -11.57909 -11.30590 -11.24964 -11.18329 -10.81148 -10.68484 -10.61960 -9.01343 -8.26433 -6.26964 1.28229 1.33207 1.42205 2.31493 2.83209 3.08394 3.77126 3.88032 4.05501 4.11084 4.25918 4.30929 4.37771 4.43208 4.53315 4.57797 4.65915 4.74176 4.82318 5.01379 5.06253 5.11360 5.17750 5.20875 5.30003 5.31218 5.34968 5.41521 5.47246 5.59929 5.64601 5.79029 6.09266 6.35165 6.74915 6.79100 6.96116 7.35789 8.90143 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030048 B = 0.010235 C = 0.008551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.631117 B = 2735.132877 C = 3273.515042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.121 4.121 3 C 0.189 3.811 4 H -0.018 1.018 5 C -0.490 4.490 6 H 0.039 0.961 7 C 0.014 3.986 8 N -0.948 5.948 9 Si 0.941 3.059 10 H -0.263 1.263 11 H -0.301 1.301 12 H -0.254 1.254 13 N -0.504 5.504 14 C 0.038 3.962 15 C -0.102 4.102 16 C -0.106 4.106 17 C -0.131 4.131 18 C 0.120 3.880 19 H 0.044 0.956 20 O -0.589 6.589 21 C 0.062 3.938 22 H 0.032 0.968 23 H 0.066 0.934 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.035 0.965 27 H 0.264 0.736 28 H 0.068 0.932 29 H 0.031 0.969 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.394 0.606 37 H 0.023 0.977 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.693 -1.481 16.109 16.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.158 4.158 3 C 0.081 3.919 4 H 0.000 1.000 5 C -0.528 4.528 6 H 0.057 0.943 7 C -0.183 4.183 8 N -0.588 5.588 9 Si 0.769 3.231 10 H -0.188 1.188 11 H -0.229 1.229 12 H -0.179 1.179 13 N -0.229 5.229 14 C -0.091 4.091 15 C -0.140 4.140 16 C -0.144 4.144 17 C -0.169 4.169 18 C 0.061 3.939 19 H 0.062 0.938 20 O -0.397 6.397 21 C -0.066 4.066 22 H 0.051 0.949 23 H 0.085 0.915 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.244 0.756 37 H 0.041 0.959 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.736 -1.778 15.561 15.758 hybrid contribution 1.002 -0.073 -0.674 1.210 sum -0.735 -1.851 14.887 15.019 Atomic orbital electron populations 1.21375 0.94405 0.99569 1.02036 1.21886 0.98437 0.96234 0.99284 1.19614 0.91440 0.91912 0.88919 1.00035 1.21040 1.30221 1.11775 0.89775 0.94264 1.25680 0.97281 0.99985 0.95306 1.70031 1.47880 1.42662 0.98271 0.85970 0.79345 0.80655 0.77148 1.18847 1.22899 1.17877 1.61254 1.59436 1.00266 1.01917 1.22194 0.97055 0.99235 0.90608 1.21921 0.96893 0.97779 0.97377 1.21076 0.98037 0.93462 1.01842 1.21959 1.01000 0.99245 0.94665 1.20578 0.96137 0.81373 0.95810 0.93802 1.86463 1.55294 1.17807 1.80143 1.20612 0.95756 0.89853 1.00372 0.94853 0.91517 0.93263 0.91287 0.94689 0.92708 0.91408 0.95082 0.90431 0.91776 0.90446 0.93150 0.91967 0.89513 0.75604 0.95861 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.55 9.52 71.98 0.69 -3.86 16 2 C -0.12 -4.98 4.87 30.59 0.15 -4.83 16 3 C 0.19 8.81 1.25 44.17 0.06 8.87 16 4 H -0.02 -0.88 7.20 -2.39 -0.02 -0.89 16 5 C -0.49 -27.81 6.90 25.60 0.18 -27.64 16 6 H 0.04 2.52 7.12 -2.91 -0.02 2.50 16 7 C 0.01 0.85 5.45 84.65 0.46 1.31 16 8 N -0.95 -59.74 13.96 21.45 0.30 -59.45 16 9 Si 0.94 45.46 24.39 68.60 1.67 47.13 16 10 H -0.26 -11.98 6.85 99.48 0.68 -11.30 16 11 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 12 H -0.25 -11.55 6.53 99.48 0.65 -10.90 16 13 N -0.50 -20.00 3.29 -890.86 -2.93 -22.93 16 14 C 0.04 1.19 4.88 87.15 0.43 1.61 16 15 C -0.10 -2.47 6.14 31.39 0.19 -2.28 16 16 C -0.11 -2.52 5.42 30.21 0.16 -2.36 16 17 C -0.13 -3.21 5.22 30.29 0.16 -3.06 16 18 C 0.12 3.98 3.18 28.92 0.09 4.07 16 19 H 0.04 1.58 7.59 -2.38 -0.02 1.56 16 20 O -0.59 -18.70 13.25 -148.98 -1.97 -20.67 16 21 C 0.06 2.54 4.25 83.94 0.36 2.90 16 22 H 0.03 1.53 7.15 -2.39 -0.02 1.51 16 23 H 0.07 2.39 7.41 -2.39 -0.02 2.38 16 24 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.07 2.40 6.12 -2.38 -0.01 2.38 16 26 H 0.03 1.53 3.23 -2.39 -0.01 1.52 16 27 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 28 H 0.07 2.10 5.39 -2.39 -0.01 2.08 16 29 H 0.03 0.96 6.51 -2.39 -0.02 0.95 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.54 7.86 -2.38 -0.02 1.52 16 32 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.05 1.41 7.38 -2.39 -0.02 1.39 16 34 H 0.06 1.57 7.15 -2.38 -0.02 1.55 16 35 H 0.09 1.64 8.07 -2.39 -0.02 1.62 16 36 H 0.39 8.00 9.00 -74.06 -0.67 7.33 16 37 H 0.02 0.94 7.24 -2.39 -0.02 0.92 16 38 H 0.05 2.53 5.93 -2.39 -0.01 2.52 16 Total: -1.00 -67.29 275.55 0.28 -67.01 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.30 Total: 14.17 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: 2.92 Total: -25.27 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -2.63 Total: -82.37 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -1.97 Total: -20.67 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.67 Total: 47.13 kcal Total: -67.29 0.28 -67.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167299.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.396 kcal (2) G-P(sol) polarization free energy of solvation -67.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds