Wall clock time and date at job start Sun Mar 29 2020 22:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47231 * 2 1 4 4 O 1.42900 * 109.46919 * 179.97438 * 3 2 1 5 5 C 1.42902 * 113.99546 * 180.02562 * 4 3 2 6 6 C 1.53511 * 114.16913 * 150.00636 * 5 4 3 7 7 N 1.47474 * 87.93320 * 87.62178 * 6 5 4 8 8 C 1.46901 * 111.00050 * 138.70820 * 7 6 5 9 9 H 1.08999 * 109.46764 * 317.23196 * 8 7 6 10 10 C 1.50700 * 109.47218 * 197.23664 * 8 7 6 11 11 H 1.08002 * 119.99810 * 354.54469 * 10 8 7 12 12 C 1.37878 * 119.99841 * 174.54194 * 10 8 7 13 13 N 1.31515 * 120.00337 * 0.02562 * 12 10 8 14 14 Si 1.86805 * 119.99568 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47045 * 90.00550 * 14 12 10 16 16 H 1.48506 * 109.46953 * 210.00008 * 14 12 10 17 17 H 1.48499 * 109.47230 * 330.00330 * 14 12 10 18 18 C 1.52999 * 109.47595 * 77.23274 * 8 7 6 19 19 C 1.53007 * 109.46896 * 295.00310 * 18 8 7 20 20 C 1.47474 * 87.83702 * 27.01175 * 7 6 5 21 21 H 1.09000 * 109.47039 * 59.99811 * 1 2 3 22 22 H 1.09001 * 109.47621 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47678 * 300.00221 * 1 2 3 24 24 H 1.09005 * 109.47033 * 240.00308 * 2 1 3 25 25 H 1.09000 * 109.47039 * 120.00189 * 2 1 3 26 26 H 1.09002 * 109.46473 * 59.99848 * 3 2 1 27 27 H 1.09000 * 109.47263 * 300.00051 * 3 2 1 28 28 H 1.08997 * 113.38652 * 16.92653 * 5 4 3 29 29 H 1.09007 * 113.47381 * 332.85536 * 6 5 4 30 30 H 1.09000 * 113.53175 * 202.40134 * 6 5 4 31 31 H 0.96992 * 119.99830 * 179.97438 * 13 12 10 32 32 H 1.08998 * 109.47215 * 175.00110 * 18 8 7 33 33 H 1.08996 * 109.46931 * 54.99986 * 18 8 7 34 34 H 1.09004 * 109.46712 * 179.97438 * 19 18 8 35 35 H 1.08996 * 109.47066 * 299.99593 * 19 18 8 36 36 H 1.08993 * 109.46898 * 59.99902 * 19 18 8 37 37 H 1.09003 * 113.47556 * 87.75449 * 20 7 6 38 38 H 1.09001 * 113.47668 * 218.22163 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0502 2.7479 0.0012 6 6 5.4136 2.8286 0.7020 7 7 6.0365 2.4670 -0.5849 8 6 7.2503 3.2594 -0.8234 9 1 7.0668 4.2974 -0.5460 10 6 7.6186 3.1872 -2.2829 11 1 7.0651 2.5411 -2.9482 12 6 8.6622 3.9461 -2.7689 13 7 9.3365 4.7325 -1.9586 14 14 9.1193 3.8560 -4.5779 15 1 8.3514 4.8777 -5.3339 16 1 10.5734 4.1137 -4.7345 17 1 8.7964 2.5051 -5.1033 18 6 8.3979 2.7012 0.0205 19 6 8.0774 2.8885 1.5048 20 6 4.8704 3.0715 -1.2554 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.6767 1.9564 -0.8900 28 1 3.3517 3.5324 0.2924 29 1 5.5488 2.0741 1.4770 30 1 5.6697 3.8322 1.0416 31 1 10.0709 5.2660 -2.3005 32 1 9.3187 3.2317 -0.2222 33 1 8.5230 1.6398 -0.1931 34 1 8.8949 2.4904 2.1060 35 1 7.9523 3.9499 1.7184 36 1 7.1567 2.3580 1.7474 37 1 4.9807 4.1403 -1.4387 38 1 4.5452 2.5229 -2.1394 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172399.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:14 Heat of formation + Delta-G solvation = -16.992861 kcal Electronic energy + Delta-G solvation = -16326.604244 eV Core-core repulsion = 13784.298172 eV Total energy + Delta-G solvation = -2542.306072 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.65079 -36.94773 -34.05363 -33.00688 -31.47910 -28.33329 -26.18109 -25.25706 -24.63936 -22.69157 -21.51808 -19.63531 -19.21969 -16.65055 -16.18117 -15.73083 -15.56307 -14.54558 -14.05265 -13.88559 -13.52554 -13.13478 -12.76140 -12.34685 -12.11112 -11.99789 -11.82799 -11.57904 -11.30681 -11.06473 -10.95081 -10.78690 -10.77008 -10.56728 -10.40520 -9.91164 -9.62847 -9.16648 -8.97896 -8.76963 -8.41862 -7.63623 -6.00831 -4.04414 3.31354 3.38061 3.43305 3.79076 4.43424 4.88655 4.92671 5.05612 5.12430 5.29551 5.32466 5.41569 5.46686 5.52428 5.68604 5.87573 5.91425 6.10034 6.11837 6.19162 6.23507 6.27803 6.37485 6.42049 6.53959 6.60052 6.84778 7.01087 7.13498 7.47348 7.52604 7.63453 7.85282 8.06249 8.31537 8.53465 9.03605 9.60531 11.07082 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032064 B = 0.006282 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.030498 B = 4456.100859 C = 5086.086915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.352 6.352 5 C 0.047 3.953 6 C -0.002 4.002 7 N -0.454 5.454 8 C 0.182 3.818 9 H 0.010 0.990 10 C -0.504 4.504 11 H 0.060 0.940 12 C 0.060 3.940 13 N -0.893 5.893 14 Si 0.895 3.105 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.273 1.273 18 C -0.105 4.105 19 C -0.161 4.161 20 C 0.003 3.997 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.260 0.740 32 H 0.083 0.917 33 H 0.041 0.959 34 H 0.031 0.969 35 H 0.039 0.961 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.083 -3.771 5.146 14.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.017 4.017 4 O -0.270 6.270 5 C -0.011 4.011 6 C -0.131 4.131 7 N -0.178 5.178 8 C 0.075 3.925 9 H 0.027 0.973 10 C -0.542 4.542 11 H 0.079 0.921 12 C -0.141 4.141 13 N -0.532 5.532 14 Si 0.723 3.277 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.198 1.198 18 C -0.144 4.144 19 C -0.218 4.218 20 C -0.127 4.127 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.564 -4.498 4.989 14.247 hybrid contribution 0.183 1.234 -0.850 1.509 sum -12.381 -3.264 4.139 13.456 Atomic orbital electron populations 1.21692 0.95142 1.01930 1.01832 1.21446 0.95255 0.96020 1.03397 1.22563 0.82195 0.97374 0.99617 1.87967 1.18180 1.26400 1.94466 1.23438 0.94145 0.84602 0.98929 1.24178 0.92014 1.00169 0.96733 1.68991 1.02095 1.45425 1.01248 1.19844 0.86417 0.90482 0.95734 0.97252 1.21087 1.15594 1.24501 0.93059 0.92142 1.24938 0.96205 0.95213 0.97783 1.69926 1.21488 1.27173 1.34610 0.86549 0.77501 0.78423 0.85276 1.20808 1.21255 1.19825 1.21457 1.01741 0.99966 0.91220 1.22188 1.00408 1.00072 0.99168 1.23976 0.92335 0.99093 0.97296 0.92622 0.92255 0.92719 0.91056 0.91253 0.93877 0.93651 0.91429 0.90038 0.91224 0.93009 0.89821 0.93995 0.94938 0.94205 0.92726 0.91126 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.15 0.37 -0.88 16 2 C -0.12 -1.36 6.30 -26.73 -0.17 -1.53 16 3 C 0.06 0.76 5.78 37.16 0.21 0.97 16 4 O -0.35 -6.00 10.39 -35.23 -0.37 -6.36 16 5 C 0.05 0.81 4.65 -26.20 -0.12 0.68 16 6 C 0.00 -0.03 5.16 -7.56 -0.04 -0.07 16 7 N -0.45 -10.30 6.12 -238.05 -1.46 -11.75 16 8 C 0.18 4.67 1.24 -68.86 -0.09 4.58 16 9 H 0.01 0.27 7.56 -51.93 -0.39 -0.12 16 10 C -0.50 -14.13 8.10 -34.44 -0.28 -14.41 16 11 H 0.06 1.73 7.78 -52.49 -0.41 1.32 16 12 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 13 N -0.89 -25.69 11.72 55.43 0.65 -25.04 16 14 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 18 C -0.11 -2.60 5.49 -26.73 -0.15 -2.75 16 19 C -0.16 -3.30 8.84 37.16 0.33 -2.97 16 20 C 0.00 0.05 6.90 -7.56 -0.05 0.00 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.97 7.88 -51.93 -0.41 0.56 16 29 H 0.08 1.49 6.73 -51.93 -0.35 1.14 16 30 H 0.07 1.28 7.27 -51.93 -0.38 0.90 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.08 2.27 6.42 -51.93 -0.33 1.94 16 33 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 1.05 4.59 -51.93 -0.24 0.81 16 37 H 0.07 1.44 7.82 -51.93 -0.41 1.03 16 38 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 LS Contribution 300.68 15.07 4.53 4.53 Total: -1.00 -29.68 300.68 -8.44 -38.12 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.70 Total: -1.33 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -0.08 Total: -14.79 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.81 Total: -36.80 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.37 Total: -6.36 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.68 -8.44 -38.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172399.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.125 kcal (2) G-P(sol) polarization free energy of solvation -29.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds