Wall clock time and date at job start Sun Mar 29 2020 22:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47231 * 2 1 4 4 O 1.42900 * 109.46919 * 179.97438 * 3 2 1 5 5 C 1.42902 * 113.99546 * 180.02562 * 4 3 2 6 6 C 1.53511 * 114.16913 * 150.00636 * 5 4 3 7 7 N 1.47474 * 87.93320 * 87.62178 * 6 5 4 8 8 C 1.46901 * 111.00050 * 138.70820 * 7 6 5 9 9 H 1.08999 * 109.46764 * 317.23196 * 8 7 6 10 10 C 1.50700 * 109.47218 * 197.23664 * 8 7 6 11 11 H 1.08002 * 119.99810 * 354.54469 * 10 8 7 12 12 C 1.37878 * 119.99841 * 174.54194 * 10 8 7 13 13 N 1.31515 * 120.00337 * 0.02562 * 12 10 8 14 14 Si 1.86805 * 119.99568 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47045 * 90.00550 * 14 12 10 16 16 H 1.48506 * 109.46953 * 210.00008 * 14 12 10 17 17 H 1.48499 * 109.47230 * 330.00330 * 14 12 10 18 18 C 1.52999 * 109.47595 * 77.23274 * 8 7 6 19 19 C 1.53007 * 109.46896 * 295.00310 * 18 8 7 20 20 C 1.47474 * 87.83702 * 27.01175 * 7 6 5 21 21 H 1.09000 * 109.47039 * 59.99811 * 1 2 3 22 22 H 1.09001 * 109.47621 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47678 * 300.00221 * 1 2 3 24 24 H 1.09005 * 109.47033 * 240.00308 * 2 1 3 25 25 H 1.09000 * 109.47039 * 120.00189 * 2 1 3 26 26 H 1.09002 * 109.46473 * 59.99848 * 3 2 1 27 27 H 1.09000 * 109.47263 * 300.00051 * 3 2 1 28 28 H 1.08997 * 113.38652 * 16.92653 * 5 4 3 29 29 H 1.09007 * 113.47381 * 332.85536 * 6 5 4 30 30 H 1.09000 * 113.53175 * 202.40134 * 6 5 4 31 31 H 0.96992 * 119.99830 * 179.97438 * 13 12 10 32 32 H 1.08998 * 109.47215 * 175.00110 * 18 8 7 33 33 H 1.08996 * 109.46931 * 54.99986 * 18 8 7 34 34 H 1.09004 * 109.46712 * 179.97438 * 19 18 8 35 35 H 1.08996 * 109.47066 * 299.99593 * 19 18 8 36 36 H 1.08993 * 109.46898 * 59.99902 * 19 18 8 37 37 H 1.09003 * 113.47556 * 87.75449 * 20 7 6 38 38 H 1.09001 * 113.47668 * 218.22163 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0502 2.7479 0.0012 6 6 5.4136 2.8286 0.7020 7 7 6.0365 2.4670 -0.5849 8 6 7.2503 3.2594 -0.8234 9 1 7.0668 4.2974 -0.5460 10 6 7.6186 3.1872 -2.2829 11 1 7.0651 2.5411 -2.9482 12 6 8.6622 3.9461 -2.7689 13 7 9.3365 4.7325 -1.9586 14 14 9.1193 3.8560 -4.5779 15 1 8.3514 4.8777 -5.3339 16 1 10.5734 4.1137 -4.7345 17 1 8.7964 2.5051 -5.1033 18 6 8.3979 2.7012 0.0205 19 6 8.0774 2.8885 1.5048 20 6 4.8704 3.0715 -1.2554 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.6767 1.9564 -0.8900 28 1 3.3517 3.5324 0.2924 29 1 5.5488 2.0741 1.4770 30 1 5.6697 3.8322 1.0416 31 1 10.0709 5.2660 -2.3005 32 1 9.3187 3.2317 -0.2222 33 1 8.5230 1.6398 -0.1931 34 1 8.8949 2.4904 2.1060 35 1 7.9523 3.9499 1.7184 36 1 7.1567 2.3580 1.7474 37 1 4.9807 4.1403 -1.4387 38 1 4.5452 2.5229 -2.1394 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172399.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:14 Heat of formation + Delta-G solvation = -37.219121 kcal Electronic energy + Delta-G solvation = -16327.481321 eV Core-core repulsion = 13784.298172 eV Total energy + Delta-G solvation = -2543.183149 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.21550 -38.26503 -35.74461 -34.22139 -33.39262 -30.11741 -27.48783 -26.68235 -26.30472 -24.51920 -22.42087 -21.50402 -20.71265 -18.56449 -17.66574 -17.30326 -16.77680 -16.33121 -15.49465 -15.24943 -15.19290 -14.46681 -14.22761 -13.89740 -13.57344 -13.45758 -13.13618 -13.02809 -12.81887 -12.76787 -12.65044 -12.33506 -12.21886 -11.90286 -11.75658 -11.55995 -11.52382 -10.96564 -10.72576 -10.51947 -10.29489 -9.42421 -8.15091 -6.25952 1.38037 1.39630 1.50518 2.40155 2.59912 3.13900 3.52950 3.54423 4.02685 4.10589 4.17929 4.38410 4.44930 4.50380 4.59143 4.60932 4.63964 4.68002 4.73134 4.79654 4.86744 4.93983 4.98764 5.09963 5.18834 5.21329 5.28165 5.30952 5.41403 5.54315 5.56881 5.70931 6.08745 6.28214 6.42081 6.59761 6.88787 7.42971 8.91827 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032064 B = 0.006282 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.030498 B = 4456.100859 C = 5086.086915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C 0.052 3.948 4 O -0.376 6.376 5 C 0.073 3.927 6 C -0.001 4.001 7 N -0.479 5.479 8 C 0.190 3.810 9 H -0.017 1.017 10 C -0.524 4.524 11 H 0.046 0.954 12 C 0.015 3.985 13 N -0.917 5.917 14 Si 0.956 3.044 15 H -0.273 1.273 16 H -0.280 1.280 17 H -0.274 1.274 18 C -0.102 4.102 19 C -0.149 4.149 20 C -0.004 4.004 21 H 0.059 0.941 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.262 0.738 32 H 0.053 0.947 33 H 0.028 0.972 34 H 0.051 0.949 35 H 0.040 0.960 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.600 -3.963 5.698 16.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 C -0.024 4.024 4 O -0.295 6.295 5 C 0.014 3.986 6 C -0.130 4.130 7 N -0.202 5.202 8 C 0.083 3.917 9 H 0.000 1.000 10 C -0.563 4.563 11 H 0.064 0.936 12 C -0.184 4.184 13 N -0.556 5.556 14 Si 0.782 3.218 15 H -0.199 1.199 16 H -0.206 1.206 17 H -0.198 1.198 18 C -0.141 4.141 19 C -0.206 4.206 20 C -0.134 4.134 21 H 0.078 0.922 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.122 0.878 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.100 -4.697 5.547 15.863 hybrid contribution 0.604 1.252 -1.017 1.723 sum -13.496 -3.445 4.529 14.646 Atomic orbital electron populations 1.21662 0.92938 1.02877 1.02566 1.21470 0.97079 0.94876 1.02623 1.22857 0.79914 0.98760 1.00902 1.87943 1.20851 1.26371 1.94350 1.23205 0.94055 0.85771 0.95564 1.24191 0.92835 1.00582 0.95362 1.68920 1.01839 1.45345 1.04092 1.19618 0.88146 0.89406 0.94572 0.99978 1.21331 1.15888 1.24533 0.94506 0.93581 1.25668 0.96034 0.94822 1.01846 1.70033 1.21747 1.27597 1.36261 0.85586 0.77425 0.78394 0.80414 1.19884 1.20577 1.19846 1.21316 1.00205 0.98362 0.94187 1.22052 1.01885 1.00517 0.96163 1.24009 0.92529 0.98314 0.98519 0.92202 0.91273 0.91653 0.92379 0.91554 0.91813 0.92991 0.87753 0.89273 0.90680 0.92861 0.92827 0.95296 0.93032 0.94107 0.91180 0.91879 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.91 71.98 0.71 -1.32 16 2 C -0.12 -2.48 6.30 30.59 0.19 -2.28 16 3 C 0.05 1.19 5.78 71.98 0.42 1.61 16 4 O -0.38 -12.13 10.39 -148.98 -1.55 -13.67 16 5 C 0.07 2.33 4.65 30.94 0.14 2.47 16 6 C 0.00 -0.03 5.16 83.57 0.43 0.40 16 7 N -0.48 -21.78 6.12 -907.44 -5.55 -27.33 16 8 C 0.19 9.95 1.24 44.17 0.05 10.00 16 9 H -0.02 -0.98 7.56 -2.39 -0.02 -1.00 16 10 C -0.52 -30.14 8.10 25.60 0.21 -29.93 16 11 H 0.05 2.71 7.78 -2.91 -0.02 2.69 16 12 C 0.02 0.87 5.30 84.65 0.45 1.32 16 13 N -0.92 -53.67 11.72 21.45 0.25 -53.42 16 14 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 15 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 18 C -0.10 -5.12 5.49 30.60 0.17 -4.95 16 19 C -0.15 -5.96 8.84 71.98 0.64 -5.32 16 20 C 0.00 -0.16 6.90 83.57 0.58 0.42 16 21 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 22 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.10 2.61 7.88 -2.39 -0.02 2.59 16 29 H 0.09 3.08 6.73 -2.38 -0.02 3.06 16 30 H 0.08 2.65 7.27 -2.39 -0.02 2.63 16 31 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 32 H 0.05 2.98 6.42 -2.39 -0.02 2.97 16 33 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 2.57 4.59 -2.39 -0.01 2.56 16 37 H 0.06 2.61 7.82 -2.39 -0.02 2.59 16 38 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -64.34 300.68 0.16 -64.18 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 1.00 Total: 10.92 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: 3.99 Total: -27.59 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -5.30 Total: -80.75 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -1.55 Total: -13.67 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -64.34 0.16 -64.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172399.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.959 kcal (2) G-P(sol) polarization free energy of solvation -64.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds