Wall clock time and date at job start Sun Mar 29 2020 21:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47402 * 2 1 4 4 H 1.08995 * 109.47038 * 177.45776 * 3 2 1 5 5 C 1.50700 * 109.47229 * 297.46376 * 3 2 1 6 6 H 1.07995 * 120.00273 * 114.22413 * 5 3 2 7 7 C 1.37881 * 119.99718 * 294.21923 * 5 3 2 8 8 N 1.31513 * 119.99793 * 347.20638 * 7 5 3 9 9 Si 1.86801 * 119.99891 * 167.20113 * 7 5 3 10 10 H 1.48503 * 109.47185 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47036 * 240.00391 * 9 7 5 12 12 H 1.48492 * 109.46955 * 120.00368 * 9 7 5 13 13 N 1.46908 * 109.46884 * 57.45949 * 3 2 1 14 14 C 1.47014 * 110.99843 * 53.39012 * 13 3 2 15 15 C 1.53094 * 109.25606 * 182.39308 * 14 13 3 16 16 H 1.08997 * 109.50589 * 63.13085 * 15 14 13 17 17 C 1.53005 * 109.50767 * 183.21776 * 15 14 13 18 18 O 1.43016 * 109.26098 * 303.15148 * 15 14 13 19 19 C 1.43015 * 113.73601 * 58.66889 * 18 15 14 20 20 C 1.47005 * 110.99799 * 177.02880 * 13 3 2 21 21 H 1.08995 * 109.50894 * 57.67442 * 20 13 3 22 22 C 1.52996 * 109.50772 * 297.53659 * 20 13 3 23 23 H 1.09005 * 109.46970 * 65.11889 * 1 2 3 24 24 H 1.08991 * 109.47260 * 185.11888 * 1 2 3 25 25 H 1.09001 * 109.47066 * 305.12246 * 1 2 3 26 26 H 1.09007 * 109.46802 * 240.00526 * 2 1 3 27 27 H 1.08992 * 109.47061 * 120.00616 * 2 1 3 28 28 H 0.96992 * 120.00415 * 1.77452 * 8 7 5 29 29 H 1.09004 * 109.50902 * 302.32887 * 14 13 3 30 30 H 1.09001 * 109.50325 * 62.41303 * 14 13 3 31 31 H 1.09006 * 109.46954 * 59.99908 * 17 15 14 32 32 H 1.08994 * 109.47471 * 179.97438 * 17 15 14 33 33 H 1.08998 * 109.46687 * 300.00176 * 17 15 14 34 34 H 1.09004 * 109.50512 * 61.27031 * 19 18 15 35 35 H 1.08996 * 109.51041 * 181.35199 * 19 18 15 36 36 H 1.09005 * 109.46850 * 60.00631 * 22 20 13 37 37 H 1.08998 * 109.47370 * 180.02562 * 22 20 13 38 38 H 1.08996 * 109.47891 * 300.00563 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1291 1.4427 0.0456 5 6 1.5898 2.1345 -1.2607 6 1 0.8912 2.9563 -1.2056 7 6 2.0699 1.7187 -2.4845 8 7 3.0974 0.9000 -2.5440 9 14 1.2606 2.3179 -4.0579 10 1 0.1335 3.2241 -3.7207 11 1 0.7483 1.1543 -4.8252 12 1 2.2570 3.0520 -4.8784 13 7 1.5009 2.1525 1.1676 14 6 1.7876 1.4188 2.4089 15 6 1.1583 2.1609 3.5909 16 1 0.0747 2.1784 3.4744 17 6 1.5206 1.4463 4.8944 18 8 1.6572 3.5008 3.6263 19 6 1.3949 4.2445 2.4333 20 6 2.0266 3.5234 1.2395 21 1 1.7808 4.0561 0.3209 22 6 3.5458 3.4796 1.4149 23 1 -0.3633 0.4324 -0.9323 24 1 -0.3633 -1.0235 0.0917 25 1 -0.3633 0.5912 0.8406 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.5014 0.5685 -1.7269 29 1 1.3674 0.4151 2.3439 30 1 2.8662 1.3532 2.5521 31 1 2.6043 1.4305 5.0110 32 1 1.0727 1.9753 5.7355 33 1 1.1434 0.4240 4.8651 34 1 0.3182 4.3232 2.2828 35 1 1.8234 5.2425 2.5248 36 1 3.9947 2.9627 0.5666 37 1 3.9349 4.4963 1.4686 38 1 3.7903 2.9484 2.3347 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255175128.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:06 Heat of formation + Delta-G solvation = -50.423364 kcal Electronic energy + Delta-G solvation = -17491.270330 eV Core-core repulsion = 14947.514602 eV Total energy + Delta-G solvation = -2543.755728 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.59564 -36.32414 -33.37811 -32.74260 -31.16551 -28.74810 -26.81145 -25.90674 -24.04153 -23.59820 -21.64102 -19.82189 -18.55434 -16.66891 -16.01445 -15.73032 -14.87799 -14.54342 -14.09745 -13.74364 -13.44095 -13.13338 -12.68401 -12.32193 -12.19864 -11.85908 -11.78874 -11.36981 -11.22332 -11.06911 -10.81510 -10.73421 -10.59498 -10.32119 -10.12556 -9.97187 -9.78778 -9.74079 -8.98258 -8.53692 -8.26139 -7.24012 -6.34811 -4.01916 3.43963 3.46559 3.60765 4.10626 4.49246 4.74328 5.20354 5.36708 5.38112 5.51036 5.51728 5.65838 5.79276 5.91945 5.93614 5.99816 6.08442 6.14873 6.19354 6.25816 6.32475 6.37764 6.43657 6.49102 6.65440 6.81522 6.86883 7.07387 7.17794 7.33559 7.43629 7.57893 7.89793 8.01479 8.36415 8.61698 8.88937 9.66163 11.01882 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034445 B = 0.009239 C = 0.008324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.685056 B = 3029.972114 C = 3363.002752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.115 4.115 3 C 0.203 3.797 4 H -0.003 1.003 5 C -0.578 4.578 6 H 0.055 0.945 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 1.068 2.932 10 H -0.289 1.289 11 H -0.287 1.287 12 H -0.290 1.290 13 N -0.515 5.515 14 C 0.016 3.984 15 C 0.090 3.910 16 H 0.060 0.940 17 C -0.142 4.142 18 O -0.388 6.388 19 C 0.070 3.930 20 C 0.055 3.945 21 H 0.099 0.901 22 C -0.174 4.174 23 H 0.058 0.942 24 H 0.019 0.981 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.022 0.978 28 H 0.269 0.731 29 H 0.080 0.920 30 H 0.032 0.968 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.105 2.179 9.790 10.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.154 4.154 3 C 0.097 3.903 4 H 0.015 0.985 5 C -0.617 4.617 6 H 0.074 0.926 7 C -0.183 4.183 8 N -0.548 5.548 9 Si 0.897 3.103 10 H -0.215 1.215 11 H -0.214 1.214 12 H -0.217 1.217 13 N -0.239 5.239 14 C -0.112 4.112 15 C 0.032 3.968 16 H 0.078 0.922 17 C -0.199 4.199 18 O -0.308 6.308 19 C -0.007 4.007 20 C -0.054 4.054 21 H 0.117 0.883 22 C -0.233 4.233 23 H 0.077 0.923 24 H 0.038 0.962 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.041 0.959 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.441 2.191 8.226 9.182 hybrid contribution 0.745 -0.151 1.422 1.613 sum -2.696 2.041 9.648 10.224 Atomic orbital electron populations 1.21461 0.96307 0.97724 1.02448 1.21661 0.96397 0.98439 0.98884 1.19429 0.92454 0.90356 0.88097 0.98543 1.21790 1.29720 1.19195 0.90958 0.92636 1.25678 0.94996 0.95904 1.01714 1.70748 1.19268 1.32645 1.32112 0.83564 0.75567 0.76001 0.75179 1.21461 1.21375 1.21682 1.62476 1.58466 1.01180 1.01794 1.22816 0.98496 0.98629 0.91294 1.22117 0.97517 0.82538 0.94651 0.92232 1.21729 1.02259 0.99692 0.96263 1.87871 1.80393 1.24452 1.38043 1.22697 0.99416 0.94292 0.84312 1.22165 0.92401 0.92102 0.98745 0.88266 1.22267 0.98125 1.01194 1.01672 0.92252 0.96191 0.93035 0.91984 0.95943 0.92013 0.90182 0.94974 0.92226 0.92164 0.91289 0.93028 0.89467 0.91807 0.93369 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 9.30 37.16 0.35 -2.21 16 2 C -0.12 -2.63 4.88 -26.73 -0.13 -2.76 16 3 C 0.20 4.87 1.12 -68.86 -0.08 4.79 16 4 H 0.00 -0.07 5.42 -51.93 -0.28 -0.36 16 5 C -0.58 -15.30 6.64 -34.44 -0.23 -15.53 16 6 H 0.06 1.51 7.17 -52.49 -0.38 1.14 16 7 C 0.02 0.59 5.13 -17.82 -0.09 0.50 16 8 N -0.91 -26.53 13.04 55.43 0.72 -25.81 16 9 Si 1.07 24.85 29.92 -169.99 -5.09 19.77 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 13 N -0.51 -10.71 3.64 -219.80 -0.80 -11.51 16 14 C 0.02 0.30 3.80 -3.71 -0.01 0.28 16 15 C 0.09 1.43 3.43 -26.68 -0.09 1.34 16 16 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 17 C -0.14 -1.81 9.57 37.16 0.36 -1.46 16 18 O -0.39 -6.65 9.92 -35.23 -0.35 -7.00 16 19 C 0.07 1.16 6.41 37.21 0.24 1.40 16 20 C 0.06 1.07 2.77 -67.60 -0.19 0.89 16 21 H 0.10 2.11 6.71 -51.93 -0.35 1.76 16 22 C -0.17 -3.31 8.40 37.16 0.31 -3.00 16 23 H 0.06 1.35 7.48 -51.93 -0.39 0.96 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 1.04 6.93 -51.93 -0.36 0.68 16 26 H 0.06 1.56 6.68 -51.93 -0.35 1.22 16 27 H 0.02 0.46 6.43 -51.93 -0.33 0.13 16 28 H 0.27 7.85 6.32 -40.82 -0.26 7.59 16 29 H 0.08 1.44 5.76 -51.93 -0.30 1.14 16 30 H 0.03 0.62 6.39 -51.93 -0.33 0.28 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.06 1.39 6.40 -51.93 -0.33 1.05 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.95 6.07 -51.93 -0.32 0.64 16 LS Contribution 282.16 15.07 4.25 4.25 Total: -1.00 -28.31 282.16 -6.98 -35.29 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -6.15 Total: 0.77 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 0.43 Total: -15.76 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: -0.08 Total: -37.32 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.35 Total: -7.00 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.09 Total: 19.77 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.31 -6.98 -35.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175128.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.130 kcal (2) G-P(sol) polarization free energy of solvation -28.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds