Wall clock time and date at job start Sun Mar 29 2020 21:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47402 * 2 1 4 4 H 1.08995 * 109.47038 * 177.45776 * 3 2 1 5 5 C 1.50700 * 109.47229 * 297.46376 * 3 2 1 6 6 H 1.07995 * 120.00273 * 114.22413 * 5 3 2 7 7 C 1.37881 * 119.99718 * 294.21923 * 5 3 2 8 8 N 1.31513 * 119.99793 * 347.20638 * 7 5 3 9 9 Si 1.86801 * 119.99891 * 167.20113 * 7 5 3 10 10 H 1.48503 * 109.47185 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47036 * 240.00391 * 9 7 5 12 12 H 1.48492 * 109.46955 * 120.00368 * 9 7 5 13 13 N 1.46908 * 109.46884 * 57.45949 * 3 2 1 14 14 C 1.47014 * 110.99843 * 53.39012 * 13 3 2 15 15 C 1.53094 * 109.25606 * 182.39308 * 14 13 3 16 16 H 1.08997 * 109.50589 * 63.13085 * 15 14 13 17 17 C 1.53005 * 109.50767 * 183.21776 * 15 14 13 18 18 O 1.43016 * 109.26098 * 303.15148 * 15 14 13 19 19 C 1.43015 * 113.73601 * 58.66889 * 18 15 14 20 20 C 1.47005 * 110.99799 * 177.02880 * 13 3 2 21 21 H 1.08995 * 109.50894 * 57.67442 * 20 13 3 22 22 C 1.52996 * 109.50772 * 297.53659 * 20 13 3 23 23 H 1.09005 * 109.46970 * 65.11889 * 1 2 3 24 24 H 1.08991 * 109.47260 * 185.11888 * 1 2 3 25 25 H 1.09001 * 109.47066 * 305.12246 * 1 2 3 26 26 H 1.09007 * 109.46802 * 240.00526 * 2 1 3 27 27 H 1.08992 * 109.47061 * 120.00616 * 2 1 3 28 28 H 0.96992 * 120.00415 * 1.77452 * 8 7 5 29 29 H 1.09004 * 109.50902 * 302.32887 * 14 13 3 30 30 H 1.09001 * 109.50325 * 62.41303 * 14 13 3 31 31 H 1.09006 * 109.46954 * 59.99908 * 17 15 14 32 32 H 1.08994 * 109.47471 * 179.97438 * 17 15 14 33 33 H 1.08998 * 109.46687 * 300.00176 * 17 15 14 34 34 H 1.09004 * 109.50512 * 61.27031 * 19 18 15 35 35 H 1.08996 * 109.51041 * 181.35199 * 19 18 15 36 36 H 1.09005 * 109.46850 * 60.00631 * 22 20 13 37 37 H 1.08998 * 109.47370 * 180.02562 * 22 20 13 38 38 H 1.08996 * 109.47891 * 300.00563 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1291 1.4427 0.0456 5 6 1.5898 2.1345 -1.2607 6 1 0.8912 2.9563 -1.2056 7 6 2.0699 1.7187 -2.4845 8 7 3.0974 0.9000 -2.5440 9 14 1.2606 2.3179 -4.0579 10 1 0.1335 3.2241 -3.7207 11 1 0.7483 1.1543 -4.8252 12 1 2.2570 3.0520 -4.8784 13 7 1.5009 2.1525 1.1676 14 6 1.7876 1.4188 2.4089 15 6 1.1583 2.1609 3.5909 16 1 0.0747 2.1784 3.4744 17 6 1.5206 1.4463 4.8944 18 8 1.6572 3.5008 3.6263 19 6 1.3949 4.2445 2.4333 20 6 2.0266 3.5234 1.2395 21 1 1.7808 4.0561 0.3209 22 6 3.5458 3.4796 1.4149 23 1 -0.3633 0.4324 -0.9323 24 1 -0.3633 -1.0235 0.0917 25 1 -0.3633 0.5912 0.8406 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.5014 0.5685 -1.7269 29 1 1.3674 0.4151 2.3439 30 1 2.8662 1.3532 2.5521 31 1 2.6043 1.4305 5.0110 32 1 1.0727 1.9753 5.7355 33 1 1.1434 0.4240 4.8651 34 1 0.3182 4.3232 2.2828 35 1 1.8234 5.2425 2.5248 36 1 3.9947 2.9627 0.5666 37 1 3.9349 4.4963 1.4686 38 1 3.7903 2.9484 2.3347 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175128.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:06 Heat of formation + Delta-G solvation = -68.220701 kcal Electronic energy + Delta-G solvation = -17492.042080 eV Core-core repulsion = 14947.514602 eV Total energy + Delta-G solvation = -2544.527478 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.09731 -37.97106 -35.10148 -34.25856 -32.92396 -30.26236 -28.55404 -27.35669 -25.82062 -25.33931 -23.03957 -21.59430 -20.16438 -18.53566 -17.57845 -17.21589 -16.45380 -16.04533 -15.64455 -15.57432 -15.17454 -14.71246 -14.24669 -13.97754 -13.56769 -13.33885 -13.15673 -12.99964 -12.86941 -12.66070 -12.49340 -12.37226 -12.09876 -11.99973 -11.94386 -11.75001 -11.59270 -11.18672 -10.55264 -10.48609 -10.25651 -8.98475 -8.53324 -6.20455 1.53428 1.60681 1.77302 2.57126 2.83457 3.14226 3.24858 3.89217 4.02259 4.09939 4.18217 4.24129 4.37226 4.45787 4.49339 4.61669 4.63835 4.67562 4.69359 4.75838 4.78540 4.93771 4.97506 5.06183 5.08701 5.22346 5.26961 5.31084 5.36158 5.49040 5.66980 5.99041 6.12007 6.25223 6.45944 6.56086 6.78213 7.54807 8.82663 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034445 B = 0.009239 C = 0.008324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.685056 B = 3029.972114 C = 3363.002752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.111 4.111 3 C 0.208 3.792 4 H -0.037 1.037 5 C -0.574 4.574 6 H 0.046 0.954 7 C -0.026 4.026 8 N -0.937 5.937 9 Si 1.109 2.891 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.286 1.286 13 N -0.519 5.519 14 C 0.018 3.982 15 C 0.091 3.909 16 H 0.064 0.936 17 C -0.136 4.136 18 O -0.392 6.392 19 C 0.078 3.922 20 C 0.050 3.950 21 H 0.076 0.924 22 C -0.162 4.162 23 H 0.036 0.964 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.031 0.969 27 H 0.040 0.960 28 H 0.256 0.744 29 H 0.084 0.916 30 H 0.020 0.980 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.113 0.887 36 H 0.026 0.974 37 H 0.070 0.930 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.435 2.688 11.262 12.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.149 4.149 3 C 0.101 3.899 4 H -0.020 1.020 5 C -0.612 4.612 6 H 0.064 0.936 7 C -0.225 4.225 8 N -0.575 5.575 9 Si 0.933 3.067 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.213 1.213 13 N -0.243 5.243 14 C -0.110 4.110 15 C 0.033 3.967 16 H 0.082 0.918 17 C -0.193 4.193 18 O -0.312 6.312 19 C 0.001 3.999 20 C -0.059 4.059 21 H 0.094 0.906 22 C -0.221 4.221 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.038 0.962 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.131 0.869 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.779 2.709 9.726 11.170 hybrid contribution 1.179 -0.298 1.023 1.589 sum -3.601 2.410 10.749 11.590 Atomic orbital electron populations 1.21344 0.94521 0.99405 1.01537 1.21555 0.97828 0.97313 0.98242 1.19222 0.90455 0.91379 0.88847 1.02012 1.21976 1.28539 1.18560 0.92134 0.93604 1.26906 0.94871 0.95714 1.04978 1.70864 1.20792 1.34490 1.31351 0.83022 0.75329 0.76062 0.72287 1.19750 1.20836 1.21262 1.62426 1.58152 1.01802 1.01890 1.22901 0.98076 0.99044 0.91025 1.22246 0.97456 0.82002 0.95025 0.91796 1.21728 1.02289 1.00497 0.94818 1.87886 1.80545 1.24919 1.37815 1.22683 0.99624 0.94858 0.82736 1.22226 0.92782 0.91513 0.99402 0.90585 1.22135 0.97877 1.02033 1.00018 0.94456 0.93517 0.92191 0.95015 0.94136 0.93443 0.89796 0.96176 0.92538 0.90583 0.89484 0.92464 0.86908 0.95508 0.91121 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.51 9.30 71.98 0.67 -3.84 16 2 C -0.11 -5.08 4.88 30.60 0.15 -4.93 16 3 C 0.21 10.20 1.12 44.17 0.05 10.25 16 4 H -0.04 -2.08 5.42 -2.39 -0.01 -2.09 16 5 C -0.57 -30.97 6.64 25.60 0.17 -30.80 16 6 H 0.05 2.52 7.17 -2.91 -0.02 2.50 16 7 C -0.03 -1.46 5.13 84.66 0.43 -1.03 16 8 N -0.94 -56.24 13.04 21.45 0.28 -55.96 16 9 Si 1.11 50.33 29.92 68.60 2.05 52.39 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 12 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 13 N -0.52 -21.41 3.64 -849.30 -3.09 -24.51 16 14 C 0.02 0.63 3.80 86.31 0.33 0.96 16 15 C 0.09 2.65 3.43 30.63 0.10 2.76 16 16 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 17 C -0.14 -3.03 9.57 71.98 0.69 -2.34 16 18 O -0.39 -12.36 9.92 -148.98 -1.48 -13.84 16 19 C 0.08 2.41 6.41 72.02 0.46 2.87 16 20 C 0.05 1.92 2.77 44.93 0.12 2.05 16 21 H 0.08 3.27 6.71 -2.39 -0.02 3.25 16 22 C -0.16 -6.18 8.40 71.98 0.60 -5.58 16 23 H 0.04 1.66 7.48 -2.38 -0.02 1.64 16 24 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.06 2.32 6.93 -2.39 -0.02 2.30 16 26 H 0.03 1.63 6.68 -2.38 -0.02 1.61 16 27 H 0.04 1.67 6.43 -2.39 -0.02 1.66 16 28 H 0.26 15.64 6.32 -92.71 -0.59 15.05 16 29 H 0.08 2.87 5.76 -2.38 -0.01 2.85 16 30 H 0.02 0.76 6.39 -2.39 -0.02 0.74 16 31 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 36 H 0.03 1.19 6.40 -2.38 -0.02 1.18 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.05 1.98 6.07 -2.39 -0.01 1.96 16 Total: -1.00 -61.63 282.16 2.75 -58.88 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 1.20 Total: 12.66 kcal Atomic # 6 Polarization: -33.41 SS G_CDS: 3.78 Total: -29.62 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -2.81 Total: -80.47 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -1.48 Total: -13.84 kcal Atomic # 14 Polarization: 50.33 SS G_CDS: 2.05 Total: 52.39 kcal Total: -61.63 2.75 -58.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175128.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.340 kcal (2) G-P(sol) polarization free energy of solvation -61.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds