Wall clock time and date at job start Sun Mar 29 2020 21:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47009 * 2 1 4 4 H 1.08995 * 109.47142 * 55.00019 * 3 2 1 5 5 C 1.50706 * 109.46847 * 174.99764 * 3 2 1 6 6 H 1.08003 * 119.99648 * 119.99543 * 5 3 2 7 7 C 1.37874 * 120.00066 * 300.00085 * 5 3 2 8 8 N 1.31516 * 119.99950 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99929 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47078 * 60.00211 * 9 7 5 11 11 H 1.48500 * 109.47038 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47177 * 299.99638 * 9 7 5 13 13 N 1.46898 * 109.47130 * 294.99360 * 3 2 1 14 14 C 1.47960 * 111.00024 * 180.02562 * 13 3 2 15 15 C 1.53933 * 86.17979 * 222.41983 * 14 13 3 16 16 O 1.42905 * 113.73234 * 138.08027 * 15 14 13 17 17 C 1.42905 * 114.00201 * 150.00063 * 16 15 14 18 18 C 1.52997 * 109.47264 * 149.99741 * 17 16 15 19 19 C 1.52992 * 109.46980 * 270.00182 * 17 16 15 20 20 C 1.47964 * 110.99708 * 80.64238 * 13 3 2 21 21 H 1.09000 * 109.47388 * 300.00658 * 1 2 3 22 22 H 1.09007 * 109.46781 * 60.00399 * 1 2 3 23 23 H 1.09004 * 109.47229 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47036 * 239.99753 * 2 1 3 25 25 H 1.08998 * 109.46493 * 120.00090 * 2 1 3 26 26 H 0.96998 * 119.99943 * 180.02562 * 8 7 5 27 27 H 1.08997 * 113.75684 * 108.10265 * 14 13 3 28 28 H 1.09000 * 113.75900 * 336.73995 * 14 13 3 29 29 H 1.08999 * 113.73895 * 269.25689 * 15 14 13 30 30 H 1.08998 * 109.46610 * 29.99463 * 17 16 15 31 31 H 1.09002 * 109.47153 * 179.97438 * 18 17 16 32 32 H 1.09001 * 109.46832 * 60.00108 * 18 17 16 33 33 H 1.09004 * 109.47261 * 300.00089 * 18 17 16 34 34 H 1.09001 * 109.47066 * 299.99861 * 19 17 16 35 35 H 1.08996 * 109.47747 * 59.99527 * 19 17 16 36 36 H 1.09002 * 109.47103 * 179.97438 * 19 17 16 37 37 H 1.08998 * 113.75634 * 23.26800 * 20 13 3 38 38 H 1.08997 * 113.75927 * 251.89731 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4061 0.3374 2.1734 9 14 6.0050 0.8799 1.3812 10 1 6.5004 2.2797 1.3809 11 1 6.3977 0.2166 2.6505 12 1 6.5966 0.1450 0.2344 13 7 1.6515 2.0992 -1.2553 14 6 2.1293 3.4990 -1.2913 15 6 0.7493 3.8466 -1.8781 16 8 0.1793 5.0410 -1.3391 17 6 -0.6735 5.7398 -2.2483 18 6 -1.7568 6.4821 -1.4632 19 6 0.1530 6.7452 -3.0525 20 6 0.2462 2.5589 -1.2003 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.8291 -0.0604 2.9503 27 1 2.9550 3.6635 -1.9836 28 1 2.3078 3.9277 -0.3052 29 1 0.7145 3.8131 -2.9671 30 1 -1.1410 5.0275 -2.9281 31 1 -2.4071 7.0154 -2.1567 32 1 -1.2892 7.1943 -0.7834 33 1 -2.3457 5.7657 -0.8903 34 1 0.6206 7.4574 -2.3726 35 1 0.9248 6.2164 -3.6117 36 1 -0.4975 7.2778 -3.7463 37 1 -0.1263 2.7124 -0.1875 38 1 -0.4322 1.9725 -1.8199 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179354.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:51 Heat of formation + Delta-G solvation = -20.861437 kcal Electronic energy + Delta-G solvation = -16547.226370 eV Core-core repulsion = 14004.752544 eV Total energy + Delta-G solvation = -2542.473826 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.51560 -37.22851 -33.90568 -32.14926 -31.34313 -28.14832 -27.24228 -25.43695 -24.69992 -22.67687 -21.23595 -19.62265 -19.18357 -16.84754 -16.22157 -15.63740 -14.86004 -14.50425 -14.12741 -13.80060 -13.31657 -12.84623 -12.44962 -12.28278 -12.20981 -12.10621 -11.86913 -11.64672 -11.51553 -11.31687 -10.96956 -10.81545 -10.69315 -10.58395 -10.31284 -9.99212 -9.57963 -9.35779 -8.92158 -8.75625 -8.42921 -7.68998 -5.99655 -4.05315 3.33368 3.37453 3.40498 3.90172 4.42727 4.89161 4.94345 5.05127 5.17037 5.24888 5.30535 5.43878 5.55483 5.59993 5.78042 5.84370 6.02493 6.14792 6.21396 6.22433 6.26111 6.30697 6.39077 6.51274 6.58880 6.62177 6.79649 7.02410 7.16965 7.49018 7.55678 7.64019 7.83255 8.09697 8.32481 8.49452 9.00291 9.59395 11.06374 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032110 B = 0.006856 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.781674 B = 4082.767084 C = 4623.502370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.110 4.110 3 C 0.190 3.810 4 H 0.008 0.992 5 C -0.508 4.508 6 H 0.060 0.940 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.473 5.473 14 C 0.028 3.972 15 C 0.047 3.953 16 O -0.371 6.371 17 C 0.078 3.922 18 C -0.149 4.149 19 C -0.174 4.174 20 C -0.012 4.012 21 H 0.038 0.962 22 H 0.048 0.952 23 H 0.031 0.969 24 H 0.039 0.961 25 H 0.094 0.906 26 H 0.261 0.739 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.012 8.411 -7.612 13.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.148 4.148 3 C 0.083 3.917 4 H 0.026 0.974 5 C -0.546 4.546 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.198 5.198 14 C -0.101 4.101 15 C -0.011 4.011 16 O -0.290 6.290 17 C 0.020 3.980 18 C -0.206 4.206 19 C -0.231 4.231 20 C -0.141 4.141 21 H 0.058 0.942 22 H 0.067 0.933 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.112 0.888 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.741 7.905 -7.721 13.491 hybrid contribution 0.754 0.289 0.644 1.033 sum -6.987 8.194 -7.076 12.885 Atomic orbital electron populations 1.22091 0.99642 0.99263 1.00317 1.21520 0.91445 0.99369 1.02459 1.19763 0.95625 0.91635 0.84696 0.97410 1.21080 0.90850 1.37649 1.05035 0.92199 1.24924 0.98255 0.95254 0.95649 1.69875 1.34946 1.38686 1.09512 0.86588 0.85541 0.78210 0.77245 1.20328 1.21328 1.20229 1.68505 1.02050 1.11657 1.37551 1.23856 0.94569 0.90801 1.00888 1.24547 0.95495 0.83624 0.97428 1.88035 1.63531 1.37878 1.39522 1.22070 0.90892 0.93528 0.91483 1.21854 0.97615 1.00559 1.00591 1.22316 1.00612 0.99991 1.00225 1.24501 0.95083 0.94197 1.00289 0.94243 0.93278 0.95013 0.94209 0.88758 0.92894 0.90403 0.90623 0.89740 0.92492 0.91736 0.91943 0.92041 0.91904 0.92434 0.92171 0.91270 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 8.99 37.16 0.33 -2.88 16 2 C -0.11 -2.70 5.45 -26.73 -0.15 -2.84 16 3 C 0.19 4.85 1.38 -68.86 -0.09 4.76 16 4 H 0.01 0.23 7.62 -51.93 -0.40 -0.16 16 5 C -0.51 -14.09 8.08 -34.44 -0.28 -14.37 16 6 H 0.06 1.66 7.43 -52.48 -0.39 1.27 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -25.61 11.29 55.43 0.63 -24.98 16 9 Si 0.90 21.55 29.54 -169.99 -5.02 16.52 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.47 -10.42 5.96 -231.90 -1.38 -11.80 16 14 C 0.03 0.56 6.73 -2.77 -0.02 0.54 16 15 C 0.05 0.80 4.32 -25.78 -0.11 0.69 16 16 O -0.37 -6.11 10.01 -35.23 -0.35 -6.46 16 17 C 0.08 0.98 3.22 -26.74 -0.09 0.89 16 18 C -0.15 -1.60 9.56 37.16 0.36 -1.24 16 19 C -0.17 -1.90 9.53 37.15 0.35 -1.54 16 20 C -0.01 -0.22 5.45 -2.74 -0.01 -0.23 16 21 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.05 0.94 4.89 -51.92 -0.25 0.68 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.09 2.57 5.95 -51.93 -0.31 2.26 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.08 1.68 7.90 -51.93 -0.41 1.27 16 29 H 0.08 1.29 7.77 -51.93 -0.40 0.88 16 30 H 0.06 0.66 7.72 -51.93 -0.40 0.26 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 1.39 7.44 -51.93 -0.39 1.00 16 38 H 0.08 1.32 6.86 -51.93 -0.36 0.96 16 LS Contribution 299.43 15.07 4.51 4.51 Total: -1.00 -28.90 299.43 -8.09 -36.99 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.67 Total: -0.16 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 0.20 Total: -14.62 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.76 Total: -36.78 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.35 Total: -6.46 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.90 -8.09 -36.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179354.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.126 kcal (2) G-P(sol) polarization free energy of solvation -28.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds