Wall clock time and date at job start Sun Mar 29 2020 21:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47009 * 2 1 4 4 H 1.08995 * 109.47142 * 55.00019 * 3 2 1 5 5 C 1.50706 * 109.46847 * 174.99764 * 3 2 1 6 6 H 1.08003 * 119.99648 * 119.99543 * 5 3 2 7 7 C 1.37874 * 120.00066 * 300.00085 * 5 3 2 8 8 N 1.31516 * 119.99950 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99929 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47078 * 60.00211 * 9 7 5 11 11 H 1.48500 * 109.47038 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47177 * 299.99638 * 9 7 5 13 13 N 1.46898 * 109.47130 * 294.99360 * 3 2 1 14 14 C 1.47960 * 111.00024 * 180.02562 * 13 3 2 15 15 C 1.53933 * 86.17979 * 222.41983 * 14 13 3 16 16 O 1.42905 * 113.73234 * 138.08027 * 15 14 13 17 17 C 1.42905 * 114.00201 * 150.00063 * 16 15 14 18 18 C 1.52997 * 109.47264 * 149.99741 * 17 16 15 19 19 C 1.52992 * 109.46980 * 270.00182 * 17 16 15 20 20 C 1.47964 * 110.99708 * 80.64238 * 13 3 2 21 21 H 1.09000 * 109.47388 * 300.00658 * 1 2 3 22 22 H 1.09007 * 109.46781 * 60.00399 * 1 2 3 23 23 H 1.09004 * 109.47229 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47036 * 239.99753 * 2 1 3 25 25 H 1.08998 * 109.46493 * 120.00090 * 2 1 3 26 26 H 0.96998 * 119.99943 * 180.02562 * 8 7 5 27 27 H 1.08997 * 113.75684 * 108.10265 * 14 13 3 28 28 H 1.09000 * 113.75900 * 336.73995 * 14 13 3 29 29 H 1.08999 * 113.73895 * 269.25689 * 15 14 13 30 30 H 1.08998 * 109.46610 * 29.99463 * 17 16 15 31 31 H 1.09002 * 109.47153 * 179.97438 * 18 17 16 32 32 H 1.09001 * 109.46832 * 60.00108 * 18 17 16 33 33 H 1.09004 * 109.47261 * 300.00089 * 18 17 16 34 34 H 1.09001 * 109.47066 * 299.99861 * 19 17 16 35 35 H 1.08996 * 109.47747 * 59.99527 * 19 17 16 36 36 H 1.09002 * 109.47103 * 179.97438 * 19 17 16 37 37 H 1.08998 * 113.75634 * 23.26800 * 20 13 3 38 38 H 1.08997 * 113.75927 * 251.89731 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4061 0.3374 2.1734 9 14 6.0050 0.8799 1.3812 10 1 6.5004 2.2797 1.3809 11 1 6.3977 0.2166 2.6505 12 1 6.5966 0.1450 0.2344 13 7 1.6515 2.0992 -1.2553 14 6 2.1293 3.4990 -1.2913 15 6 0.7493 3.8466 -1.8781 16 8 0.1793 5.0410 -1.3391 17 6 -0.6735 5.7398 -2.2483 18 6 -1.7568 6.4821 -1.4632 19 6 0.1530 6.7452 -3.0525 20 6 0.2462 2.5589 -1.2003 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.8291 -0.0604 2.9503 27 1 2.9550 3.6635 -1.9836 28 1 2.3078 3.9277 -0.3052 29 1 0.7145 3.8131 -2.9671 30 1 -1.1410 5.0275 -2.9281 31 1 -2.4071 7.0154 -2.1567 32 1 -1.2892 7.1943 -0.7834 33 1 -2.3457 5.7657 -0.8903 34 1 0.6206 7.4574 -2.3726 35 1 0.9248 6.2164 -3.6117 36 1 -0.4975 7.2778 -3.7463 37 1 -0.1263 2.7124 -0.1875 38 1 -0.4322 1.9725 -1.8199 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255179354.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:51 Heat of formation + Delta-G solvation = -40.335513 kcal Electronic energy + Delta-G solvation = -16548.070830 eV Core-core repulsion = 14004.752544 eV Total energy + Delta-G solvation = -2543.318286 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.06311 -38.54003 -35.75573 -33.64952 -32.95522 -29.97967 -28.10411 -27.10283 -26.48630 -24.49641 -22.26111 -21.42257 -20.78477 -18.57468 -17.88617 -17.28870 -16.40052 -16.02328 -15.46518 -15.27954 -14.89749 -14.46315 -13.88029 -13.80859 -13.55186 -13.37579 -13.16384 -13.07902 -13.03921 -12.81747 -12.71284 -12.59503 -12.30600 -12.04109 -11.71751 -11.59792 -11.47414 -11.03611 -10.78455 -10.52054 -10.27282 -9.52293 -8.12760 -6.26069 1.40149 1.41983 1.49657 2.40269 2.71293 3.14412 3.38469 3.59013 3.99919 4.09964 4.22958 4.27768 4.36229 4.51446 4.60023 4.64908 4.71450 4.78069 4.78874 4.83982 4.93840 4.97460 4.98706 5.02237 5.10049 5.21982 5.30264 5.33272 5.37919 5.54599 5.58709 5.71425 6.11086 6.29765 6.44455 6.51515 6.86540 7.42516 8.92175 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032110 B = 0.006856 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.781674 B = 4082.767084 C = 4623.502370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C 0.197 3.803 4 H -0.031 1.031 5 C -0.527 4.527 6 H 0.054 0.946 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 0.959 3.041 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.270 1.270 13 N -0.481 5.481 14 C 0.019 3.981 15 C 0.075 3.925 16 O -0.393 6.393 17 C 0.067 3.933 18 C -0.147 4.147 19 C -0.171 4.171 20 C -0.011 4.011 21 H 0.032 0.968 22 H 0.067 0.933 23 H 0.052 0.948 24 H 0.033 0.967 25 H 0.063 0.937 26 H 0.262 0.738 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.113 0.887 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.712 9.098 -9.343 15.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 C 0.089 3.911 4 H -0.013 1.013 5 C -0.565 4.565 6 H 0.072 0.928 7 C -0.187 4.187 8 N -0.557 5.557 9 Si 0.785 3.215 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.196 1.196 13 N -0.205 5.205 14 C -0.111 4.111 15 C 0.016 3.984 16 O -0.312 6.312 17 C 0.010 3.990 18 C -0.204 4.204 19 C -0.228 4.228 20 C -0.140 4.140 21 H 0.051 0.949 22 H 0.086 0.914 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.104 0.896 28 H 0.064 0.936 29 H 0.131 0.869 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.453 8.605 -9.464 15.332 hybrid contribution 0.920 0.143 1.167 1.493 sum -7.533 8.748 -8.297 14.216 Atomic orbital electron populations 1.21957 0.96445 1.00846 1.00879 1.21367 0.94343 0.98226 1.00517 1.19531 0.94461 0.92077 0.85033 1.01327 1.21380 0.92261 1.37729 1.05137 0.92788 1.25717 1.02758 0.94865 0.95317 1.70012 1.36647 1.39164 1.09871 0.85590 0.80140 0.78368 0.77423 1.19806 1.20757 1.19561 1.68424 1.04369 1.12670 1.35078 1.23852 0.97232 0.90058 0.99910 1.24210 0.92496 0.83349 0.98312 1.88019 1.64285 1.37624 1.41265 1.22430 0.90994 0.94038 0.91574 1.21875 0.97338 1.00250 1.00948 1.22293 1.00771 0.99513 1.00234 1.24520 0.93634 0.95734 1.00109 0.94913 0.91425 0.92901 0.94853 0.91814 0.92885 0.89611 0.93591 0.86895 0.91023 0.88857 0.92699 0.92707 0.92753 0.92805 0.89533 0.93028 0.88001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.83 8.99 71.98 0.65 -5.18 16 2 C -0.11 -5.30 5.45 30.59 0.17 -5.14 16 3 C 0.20 10.35 1.38 44.17 0.06 10.41 16 4 H -0.03 -1.82 7.62 -2.39 -0.02 -1.84 16 5 C -0.53 -29.98 8.08 25.60 0.21 -29.78 16 6 H 0.05 3.06 7.43 -2.91 -0.02 3.03 16 7 C 0.01 0.70 5.29 84.65 0.45 1.15 16 8 N -0.92 -54.11 11.29 21.45 0.24 -53.87 16 9 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 13 N -0.48 -21.20 5.96 -890.81 -5.31 -26.51 16 14 C 0.02 0.76 6.73 86.41 0.58 1.34 16 15 C 0.07 2.42 4.32 31.25 0.14 2.56 16 16 O -0.39 -12.44 10.01 -148.98 -1.49 -13.93 16 17 C 0.07 1.49 3.22 30.59 0.10 1.59 16 18 C -0.15 -2.81 9.56 71.98 0.69 -2.12 16 19 C -0.17 -3.26 9.53 71.98 0.69 -2.58 16 20 C -0.01 -0.40 5.45 86.42 0.47 0.07 16 21 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.07 2.46 4.89 -2.38 -0.01 2.44 16 23 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 24 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.06 3.58 5.95 -2.39 -0.01 3.56 16 26 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 27 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 28 H 0.05 2.13 7.90 -2.39 -0.02 2.11 16 29 H 0.11 3.06 7.77 -2.39 -0.02 3.04 16 30 H 0.07 1.41 7.72 -2.39 -0.02 1.39 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.05 16 36 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.05 2.08 7.44 -2.39 -0.02 2.07 16 38 H 0.10 3.20 6.86 -2.39 -0.02 3.19 16 Total: -1.00 -63.52 299.43 0.65 -62.86 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 1.00 Total: 12.39 kcal Atomic # 6 Polarization: -31.85 SS G_CDS: 4.19 Total: -27.66 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -5.07 Total: -80.38 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -1.49 Total: -13.93 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -63.52 0.65 -62.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179354.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.529 kcal (2) G-P(sol) polarization free energy of solvation -63.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds