Wall clock time and date at job start Sun Mar 29 2020 21:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47201 * 2 1 4 4 H 1.09001 * 109.47371 * 305.00081 * 3 2 1 5 5 C 1.50701 * 109.47142 * 185.00007 * 3 2 1 6 6 H 1.08001 * 119.99525 * 240.00097 * 5 3 2 7 7 C 1.37875 * 119.99860 * 60.00052 * 5 3 2 8 8 N 1.31505 * 120.00324 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99863 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47193 * 59.99772 * 9 7 5 11 11 H 1.48496 * 109.47344 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46658 * 299.99867 * 9 7 5 13 13 N 1.46898 * 109.47026 * 64.99727 * 3 2 1 14 14 C 1.47480 * 111.00405 * 275.97305 * 13 3 2 15 15 C 1.53515 * 87.93275 * 221.29694 * 14 13 3 16 16 O 1.42902 * 114.17149 * 139.66480 * 15 14 13 17 17 C 1.42902 * 113.99606 * 116.15765 * 16 15 14 18 18 C 1.53004 * 109.47007 * 90.00345 * 17 16 15 19 19 C 1.53004 * 109.47042 * 210.00279 * 17 16 15 20 20 C 1.47486 * 110.99952 * 179.97438 * 13 3 2 21 21 H 1.09003 * 109.46496 * 59.99997 * 1 2 3 22 22 H 1.08990 * 109.47070 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46898 * 300.00513 * 1 2 3 24 24 H 1.09002 * 109.47028 * 240.00218 * 2 1 3 25 25 H 1.08992 * 109.46920 * 119.99812 * 2 1 3 26 26 H 0.97001 * 120.00628 * 180.02562 * 8 7 5 27 27 H 1.09005 * 113.47310 * 336.06042 * 14 13 3 28 28 H 1.08990 * 113.48150 * 106.52863 * 14 13 3 29 29 H 1.08998 * 114.34501 * 272.36177 * 15 14 13 30 30 H 1.09002 * 109.47420 * 330.00394 * 17 16 15 31 31 H 1.09002 * 109.46990 * 59.99786 * 18 17 16 32 32 H 1.08997 * 109.47054 * 179.97438 * 18 17 16 33 33 H 1.08994 * 109.46960 * 300.00195 * 18 17 16 34 34 H 1.08993 * 109.47190 * 59.99962 * 19 17 16 35 35 H 1.08997 * 109.46789 * 180.02562 * 19 17 16 36 36 H 1.09002 * 109.47107 * 300.00307 * 19 17 16 37 37 H 1.09005 * 113.47586 * 253.47470 * 20 13 3 38 38 H 1.08997 * 113.47701 * 23.87649 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8784 -1.2280 8 7 3.4063 0.3366 -2.1728 9 14 6.0051 0.8800 -1.3811 10 1 6.5967 0.1452 -0.2343 11 1 6.3980 0.2156 -2.6498 12 1 6.5005 2.2799 -1.3808 13 7 1.6514 2.0993 1.2552 14 6 0.2774 2.6287 1.1714 15 6 0.7748 3.8816 1.9059 16 8 0.2338 5.1062 1.4063 17 6 -0.5772 5.8105 2.3488 18 6 0.2979 6.7695 3.1584 19 6 -1.6511 6.6059 1.6037 20 6 2.1277 3.4946 1.2911 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.8293 -0.0619 -2.9495 27 1 -0.0506 2.8253 0.1506 28 1 -0.4470 2.0490 1.7433 29 1 0.7415 3.8081 2.9929 30 1 -1.0542 5.0980 3.0218 31 1 0.7749 7.4821 2.4854 32 1 -0.3207 7.3071 3.8770 33 1 1.0630 6.2030 3.6891 34 1 -2.2745 5.9227 1.0269 35 1 -2.2693 7.1434 2.3225 36 1 -1.1741 7.3184 0.9307 37 1 2.9709 3.6484 1.9646 38 1 2.2947 3.9221 0.3025 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179355.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:53 Heat of formation + Delta-G solvation = -19.439696 kcal Electronic energy + Delta-G solvation = -16527.205341 eV Core-core repulsion = 13984.793166 eV Total energy + Delta-G solvation = -2542.412175 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.65465 -37.28693 -33.95697 -32.17203 -31.35989 -28.15432 -27.24354 -25.40210 -24.65684 -22.69721 -21.24408 -19.65901 -19.22537 -16.86127 -16.23319 -15.60080 -14.85986 -14.50558 -14.18008 -13.82101 -13.32113 -12.87124 -12.46505 -12.29862 -12.21251 -12.13952 -11.84186 -11.64111 -11.50773 -11.31726 -10.95055 -10.80673 -10.70264 -10.58678 -10.31650 -10.01523 -9.58594 -9.38646 -8.92050 -8.73650 -8.44994 -7.77000 -6.00594 -4.06395 3.32920 3.37021 3.40081 3.88542 4.42226 4.87746 4.98708 5.11653 5.15036 5.23801 5.29680 5.43208 5.55178 5.60013 5.77754 5.83980 6.03360 6.14270 6.21314 6.21938 6.25766 6.30387 6.38271 6.51744 6.57210 6.59598 6.76110 7.02458 7.15670 7.47105 7.54732 7.63322 7.82275 8.08803 8.31574 8.47845 8.99135 9.58384 11.05419 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031895 B = 0.006822 C = 0.006006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.682416 B = 4103.587919 C = 4661.175610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C 0.189 3.811 4 H 0.009 0.991 5 C -0.509 4.509 6 H 0.060 0.940 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.464 5.464 14 C -0.014 4.014 15 C 0.046 3.954 16 O -0.369 6.369 17 C 0.079 3.921 18 C -0.174 4.174 19 C -0.149 4.149 20 C 0.023 3.977 21 H 0.038 0.962 22 H 0.031 0.969 23 H 0.047 0.953 24 H 0.095 0.905 25 H 0.039 0.961 26 H 0.261 0.739 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.851 8.529 7.691 13.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C 0.082 3.918 4 H 0.027 0.973 5 C -0.547 4.547 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.189 5.189 14 C -0.144 4.144 15 C -0.012 4.012 16 O -0.287 6.287 17 C 0.021 3.979 18 C -0.232 4.232 19 C -0.206 4.206 20 C -0.106 4.106 21 H 0.058 0.942 22 H 0.050 0.950 23 H 0.066 0.934 24 H 0.113 0.887 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.592 7.998 7.809 13.513 hybrid contribution 0.785 0.294 -0.667 1.071 sum -6.807 8.293 7.142 12.889 Atomic orbital electron populations 1.22039 0.99597 0.99251 1.00238 1.21516 0.91465 0.99299 1.02480 1.19801 0.95676 0.91748 0.84609 0.97297 1.21081 0.90818 1.37747 1.05086 0.92190 1.24921 0.98277 0.95214 0.95631 1.69868 1.34974 1.38587 1.09549 0.86587 0.85512 0.78222 0.77260 1.20221 1.21311 1.20311 1.68892 1.02055 1.10951 1.36969 1.24389 0.95626 0.94221 1.00152 1.24156 0.96309 0.83210 0.97568 1.88013 1.66478 1.35187 1.39032 1.22079 0.91309 0.93546 0.91008 1.22319 1.00453 1.00210 1.00176 1.21854 0.97753 1.00255 1.00766 1.23755 0.95047 0.90995 1.00826 0.94246 0.94978 0.93437 0.88731 0.94188 0.92870 0.91385 0.90868 0.89270 0.92437 0.91906 0.92157 0.92393 0.92039 0.91708 0.91934 0.90779 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.14 37.16 0.34 -2.84 16 2 C -0.11 -2.69 5.45 -26.73 -0.15 -2.83 16 3 C 0.19 4.82 1.37 -68.86 -0.09 4.73 16 4 H 0.01 0.26 7.52 -51.93 -0.39 -0.13 16 5 C -0.51 -14.12 8.08 -34.44 -0.28 -14.40 16 6 H 0.06 1.67 7.43 -52.49 -0.39 1.28 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -25.55 11.29 55.43 0.63 -24.93 16 9 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.46 -10.24 6.10 -237.81 -1.45 -11.69 16 14 C -0.01 -0.27 5.40 -7.48 -0.04 -0.31 16 15 C 0.05 0.78 4.48 -26.18 -0.12 0.66 16 16 O -0.37 -6.03 10.04 -35.23 -0.35 -6.39 16 17 C 0.08 0.97 3.22 -26.73 -0.09 0.89 16 18 C -0.17 -1.89 9.53 37.16 0.35 -1.54 16 19 C -0.15 -1.58 9.56 37.16 0.36 -1.22 16 20 C 0.02 0.46 6.47 -7.45 -0.05 0.42 16 21 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.91 5.09 -51.93 -0.26 0.65 16 24 H 0.09 2.58 5.95 -51.93 -0.31 2.27 16 25 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.07 1.37 7.54 -51.93 -0.39 0.98 16 28 H 0.07 1.27 6.80 -51.93 -0.35 0.91 16 29 H 0.09 1.36 7.76 -51.93 -0.40 0.95 16 30 H 0.06 0.67 7.71 -51.93 -0.40 0.26 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.07 1.66 7.89 -51.93 -0.41 1.25 16 LS Contribution 299.70 15.07 4.52 4.52 Total: -1.00 -28.83 299.70 -8.21 -37.04 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -6.67 Total: -0.21 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 0.14 Total: -14.84 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: -0.82 Total: -36.62 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.35 Total: -6.39 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.83 -8.21 -37.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179355.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.602 kcal (2) G-P(sol) polarization free energy of solvation -28.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds