Wall clock time and date at job start Sun Mar 29 2020 21:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47273 * 2 1 4 4 H 1.09000 * 109.46960 * 55.00387 * 3 2 1 5 5 C 1.50698 * 109.47142 * 175.00437 * 3 2 1 6 6 H 1.08002 * 120.00510 * 114.55059 * 5 3 2 7 7 C 1.37882 * 120.00114 * 294.54593 * 5 3 2 8 8 N 1.31517 * 119.99838 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00282 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47105 * 60.00530 * 9 7 5 11 11 H 1.48501 * 109.47341 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47234 * 300.00387 * 9 7 5 13 13 N 1.46904 * 109.47125 * 295.00216 * 3 2 1 14 14 C 1.47483 * 110.99903 * 173.20527 * 13 3 2 15 15 C 1.53509 * 87.93285 * 221.30049 * 14 13 3 16 16 C 1.52993 * 114.17270 * 139.67225 * 15 14 13 17 17 H 1.08996 * 109.47106 * 326.15732 * 16 15 14 18 18 C 1.52999 * 109.47249 * 86.16230 * 16 15 14 19 19 O 1.42903 * 109.47139 * 206.15536 * 16 15 14 20 20 C 1.42904 * 114.00152 * 149.99790 * 19 16 15 21 21 C 1.47480 * 110.99760 * 77.23546 * 13 3 2 22 22 H 1.08995 * 109.47278 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47327 * 59.99642 * 1 2 3 24 24 H 1.09005 * 109.47111 * 300.00039 * 1 2 3 25 25 H 1.08995 * 109.47488 * 120.00593 * 2 1 3 26 26 H 1.09005 * 109.47111 * 239.99960 * 2 1 3 27 27 H 0.97000 * 120.00144 * 179.97438 * 8 7 5 28 28 H 1.09001 * 113.47416 * 336.06315 * 14 13 3 29 29 H 1.08996 * 113.47779 * 106.52710 * 14 13 3 30 30 H 1.09008 * 114.16407 * 272.37703 * 15 14 13 31 31 H 1.09004 * 109.46973 * 180.02562 * 18 16 15 32 32 H 1.09009 * 109.46367 * 299.99529 * 18 16 15 33 33 H 1.08995 * 109.47476 * 59.99171 * 18 16 15 34 34 H 1.09000 * 109.46898 * 180.02562 * 20 19 16 35 35 H 1.08997 * 109.46950 * 300.00057 * 20 19 16 36 36 H 1.08998 * 109.46563 * 60.00491 * 20 19 16 37 37 H 1.08999 * 113.47170 * 253.46993 * 21 13 3 38 38 H 1.08999 * 113.47646 * 23.93825 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5418 1.4442 0.1237 6 1 4.1504 1.8086 -0.6907 7 6 4.1392 0.9807 1.2768 8 7 3.3982 0.5366 2.2684 9 14 6.0008 0.9822 1.4299 10 1 6.5073 2.3719 1.2973 11 1 6.3889 0.4379 2.7559 12 1 6.5864 0.1376 0.3580 13 7 1.6513 2.0993 -1.2552 14 6 1.9836 3.5359 -1.2249 15 6 0.6322 3.8059 -1.9012 16 6 -0.1044 5.0333 -1.3614 17 1 0.0992 5.1397 -0.2959 18 6 0.3779 6.2833 -2.1002 19 8 -1.5098 4.8729 -1.5642 20 6 -2.3171 5.5270 -0.5831 21 6 0.2281 2.4851 -1.2311 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 3.8184 0.2102 3.0795 28 1 2.0538 3.9441 -0.2167 29 1 2.8401 3.7966 -1.8465 30 1 0.6617 3.7631 -2.9901 31 1 -0.1466 7.1579 -1.7152 32 1 1.4500 6.4057 -1.9454 33 1 0.1744 6.1769 -3.1656 34 1 -3.3702 5.3571 -0.8072 35 1 -2.0866 5.1253 0.4036 36 1 -2.1102 6.5971 -0.5972 37 1 -0.4031 1.8554 -1.8581 38 1 -0.1702 2.6131 -0.2246 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179969.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:46 Heat of formation + Delta-G solvation = -16.516921 kcal Electronic energy + Delta-G solvation = -16718.538321 eV Core-core repulsion = 14176.252886 eV Total energy + Delta-G solvation = -2542.285434 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.80297 -37.54487 -34.11760 -31.88436 -31.04143 -28.27962 -26.68711 -25.54999 -24.69584 -23.07035 -21.48202 -19.37212 -19.04738 -16.66519 -16.20915 -15.58910 -15.27024 -14.81550 -14.46857 -13.61037 -13.33552 -13.10772 -12.58785 -12.47300 -12.19552 -11.96336 -11.81376 -11.46764 -11.41207 -11.18256 -10.96438 -10.73033 -10.63385 -10.48385 -10.03612 -9.84567 -9.59405 -9.53859 -9.01432 -8.78001 -8.42839 -7.68878 -6.02275 -4.06391 3.31720 3.36109 3.39330 3.84531 4.41310 4.88136 4.99166 5.17465 5.29157 5.35873 5.39353 5.45127 5.49877 5.67126 5.74343 5.85124 6.05364 6.14245 6.18687 6.24156 6.26125 6.37223 6.40360 6.48539 6.60405 6.78679 6.82260 7.01525 7.13553 7.35224 7.46843 7.53432 7.83132 8.04382 8.29765 8.51392 9.01118 9.58530 11.05473 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031080 B = 0.007369 C = 0.006561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.684467 B = 3798.539323 C = 4266.679152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.106 4.106 3 C 0.186 3.814 4 H 0.009 0.991 5 C -0.506 4.506 6 H 0.060 0.940 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.468 5.468 14 C 0.030 3.970 15 C -0.126 4.126 16 C 0.095 3.905 17 H 0.059 0.941 18 C -0.170 4.170 19 O -0.382 6.382 20 C 0.031 3.969 21 C 0.015 3.985 22 H 0.031 0.969 23 H 0.055 0.945 24 H 0.038 0.962 25 H 0.083 0.917 26 H 0.041 0.959 27 H 0.261 0.739 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.040 0.960 36 H 0.036 0.964 37 H 0.075 0.925 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.742 8.506 -4.706 12.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.144 4.144 3 C 0.079 3.921 4 H 0.027 0.973 5 C -0.545 4.545 6 H 0.078 0.922 7 C -0.142 4.142 8 N -0.531 5.531 9 Si 0.723 3.277 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.191 5.191 14 C -0.099 4.099 15 C -0.145 4.145 16 C 0.037 3.963 17 H 0.077 0.923 18 C -0.228 4.228 19 O -0.301 6.301 20 C -0.066 4.066 21 C -0.114 4.114 22 H 0.050 0.950 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.102 0.898 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.093 0.907 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.506 7.837 -5.157 12.015 hybrid contribution 0.802 0.562 1.266 1.601 sum -6.704 8.399 -3.890 11.429 Atomic orbital electron populations 1.22184 0.99460 0.99449 1.00703 1.21461 0.91643 0.99463 1.01840 1.19789 0.95725 0.91584 0.84976 0.97295 1.21053 0.90852 1.41854 1.00702 0.92190 1.24946 0.98196 0.95310 0.95699 1.69920 1.34985 1.42572 1.05652 0.86606 0.85634 0.78331 0.77114 1.20356 1.21362 1.20192 1.68925 1.03823 1.09455 1.36907 1.23446 0.95188 0.92071 0.99225 1.23036 0.97028 0.93596 1.00827 1.22179 0.80700 0.94801 0.98591 0.92262 1.22244 1.01633 0.97398 1.01485 1.87916 1.16834 1.74652 1.50726 1.22738 0.95628 0.96135 0.92051 1.23707 0.94448 0.94123 0.99119 0.94989 0.92647 0.94259 0.89841 0.94041 0.92928 0.91858 0.90897 0.88381 0.93085 0.91361 0.91927 0.90030 0.94126 0.94540 0.90696 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 8.84 37.15 0.33 -2.99 16 2 C -0.11 -2.59 5.49 -26.74 -0.15 -2.73 16 3 C 0.19 4.72 1.24 -68.86 -0.09 4.63 16 4 H 0.01 0.26 7.56 -51.93 -0.39 -0.13 16 5 C -0.51 -13.98 8.10 -34.44 -0.28 -14.26 16 6 H 0.06 1.67 7.78 -52.49 -0.41 1.26 16 7 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 8 N -0.89 -25.56 11.72 55.43 0.65 -24.91 16 9 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.47 -10.28 6.12 -237.98 -1.46 -11.74 16 14 C 0.03 0.58 6.63 -7.54 -0.05 0.53 16 15 C -0.13 -2.07 3.68 -90.09 -0.33 -2.40 16 16 C 0.10 1.37 2.56 -26.74 -0.07 1.30 16 17 H 0.06 0.87 7.54 -51.93 -0.39 0.48 16 18 C -0.17 -2.05 9.53 37.16 0.35 -1.69 16 19 O -0.38 -5.58 10.16 -35.23 -0.36 -5.94 16 20 C 0.03 0.35 10.82 101.05 1.09 1.45 16 21 C 0.02 0.28 4.71 -7.54 -0.04 0.25 16 22 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 1.07 4.59 -51.93 -0.24 0.83 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.08 2.26 6.42 -51.93 -0.33 1.92 16 26 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.06 1.28 7.61 -51.93 -0.40 0.88 16 29 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.10 1.57 8.14 -51.92 -0.42 1.14 16 31 H 0.05 0.55 7.87 -51.93 -0.41 0.14 16 32 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.04 0.45 8.08 -51.93 -0.42 0.03 16 36 H 0.04 0.36 7.87 -51.93 -0.41 -0.05 16 37 H 0.07 1.37 6.72 -51.93 -0.35 1.02 16 38 H 0.06 1.13 7.23 -51.93 -0.38 0.76 16 LS Contribution 298.47 15.07 4.50 4.50 Total: -1.00 -28.93 298.47 -7.64 -36.57 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.64 Total: -0.54 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 0.68 Total: -14.35 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: -0.81 Total: -36.65 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.36 Total: -5.94 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.93 -7.64 -36.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179969.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.055 kcal (2) G-P(sol) polarization free energy of solvation -28.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds