Wall clock time and date at job start Sun Mar 29 2020 21:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47273 * 2 1 4 4 H 1.09000 * 109.46960 * 55.00387 * 3 2 1 5 5 C 1.50698 * 109.47142 * 175.00437 * 3 2 1 6 6 H 1.08002 * 120.00510 * 114.55059 * 5 3 2 7 7 C 1.37882 * 120.00114 * 294.54593 * 5 3 2 8 8 N 1.31517 * 119.99838 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00282 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47105 * 60.00530 * 9 7 5 11 11 H 1.48501 * 109.47341 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47234 * 300.00387 * 9 7 5 13 13 N 1.46904 * 109.47125 * 295.00216 * 3 2 1 14 14 C 1.47483 * 110.99903 * 173.20527 * 13 3 2 15 15 C 1.53509 * 87.93285 * 221.30049 * 14 13 3 16 16 C 1.52993 * 114.17270 * 139.67225 * 15 14 13 17 17 H 1.08996 * 109.47106 * 326.15732 * 16 15 14 18 18 C 1.52999 * 109.47249 * 86.16230 * 16 15 14 19 19 O 1.42903 * 109.47139 * 206.15536 * 16 15 14 20 20 C 1.42904 * 114.00152 * 149.99790 * 19 16 15 21 21 C 1.47480 * 110.99760 * 77.23546 * 13 3 2 22 22 H 1.08995 * 109.47278 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47327 * 59.99642 * 1 2 3 24 24 H 1.09005 * 109.47111 * 300.00039 * 1 2 3 25 25 H 1.08995 * 109.47488 * 120.00593 * 2 1 3 26 26 H 1.09005 * 109.47111 * 239.99960 * 2 1 3 27 27 H 0.97000 * 120.00144 * 179.97438 * 8 7 5 28 28 H 1.09001 * 113.47416 * 336.06315 * 14 13 3 29 29 H 1.08996 * 113.47779 * 106.52710 * 14 13 3 30 30 H 1.09008 * 114.16407 * 272.37703 * 15 14 13 31 31 H 1.09004 * 109.46973 * 180.02562 * 18 16 15 32 32 H 1.09009 * 109.46367 * 299.99529 * 18 16 15 33 33 H 1.08995 * 109.47476 * 59.99171 * 18 16 15 34 34 H 1.09000 * 109.46898 * 180.02562 * 20 19 16 35 35 H 1.08997 * 109.46950 * 300.00057 * 20 19 16 36 36 H 1.08998 * 109.46563 * 60.00491 * 20 19 16 37 37 H 1.08999 * 113.47170 * 253.46993 * 21 13 3 38 38 H 1.08999 * 113.47646 * 23.93825 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5418 1.4442 0.1237 6 1 4.1504 1.8086 -0.6907 7 6 4.1392 0.9807 1.2768 8 7 3.3982 0.5366 2.2684 9 14 6.0008 0.9822 1.4299 10 1 6.5073 2.3719 1.2973 11 1 6.3889 0.4379 2.7559 12 1 6.5864 0.1376 0.3580 13 7 1.6513 2.0993 -1.2552 14 6 1.9836 3.5359 -1.2249 15 6 0.6322 3.8059 -1.9012 16 6 -0.1044 5.0333 -1.3614 17 1 0.0992 5.1397 -0.2959 18 6 0.3779 6.2833 -2.1002 19 8 -1.5098 4.8729 -1.5642 20 6 -2.3171 5.5270 -0.5831 21 6 0.2281 2.4851 -1.2311 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 3.8184 0.2102 3.0795 28 1 2.0538 3.9441 -0.2167 29 1 2.8401 3.7966 -1.8465 30 1 0.6617 3.7631 -2.9901 31 1 -0.1466 7.1579 -1.7152 32 1 1.4500 6.4057 -1.9454 33 1 0.1744 6.1769 -3.1656 34 1 -3.3702 5.3571 -0.8072 35 1 -2.0866 5.1253 0.4036 36 1 -2.1102 6.5971 -0.5972 37 1 -0.4031 1.8554 -1.8581 38 1 -0.1702 2.6131 -0.2246 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255179969.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:45 Heat of formation + Delta-G solvation = -36.233545 kcal Electronic energy + Delta-G solvation = -16719.393298 eV Core-core repulsion = 14176.252886 eV Total energy + Delta-G solvation = -2543.140411 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.33939 -38.73802 -35.97012 -33.74185 -32.40119 -30.01507 -27.70923 -27.16226 -26.30853 -24.83468 -22.86778 -21.22336 -20.51238 -18.52405 -17.53903 -17.28272 -16.58962 -16.25846 -15.95110 -15.19223 -15.01604 -14.53338 -14.05125 -13.86603 -13.66685 -13.34041 -13.22235 -13.18487 -12.89646 -12.84608 -12.62582 -12.35769 -12.25855 -12.04034 -11.66509 -11.50719 -11.36178 -10.97096 -10.75029 -10.52021 -10.39027 -9.47529 -8.14501 -6.26041 1.39947 1.41957 1.49550 2.40571 2.74527 3.14789 3.41986 3.64866 3.95071 4.23784 4.24486 4.41423 4.46123 4.53553 4.56226 4.60494 4.63271 4.64230 4.77616 4.82777 4.85286 4.90639 4.93555 5.03553 5.06249 5.17770 5.27227 5.28707 5.42646 5.53223 5.56566 5.71852 6.07268 6.28393 6.32265 6.56898 6.88604 7.42986 8.92310 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031080 B = 0.007369 C = 0.006561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.684467 B = 3798.539323 C = 4266.679152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.102 4.102 3 C 0.194 3.806 4 H -0.024 1.024 5 C -0.524 4.524 6 H 0.052 0.948 7 C 0.013 3.987 8 N -0.919 5.919 9 Si 0.958 3.042 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.484 5.484 14 C 0.028 3.972 15 C -0.102 4.102 16 C 0.098 3.902 17 H 0.051 0.949 18 C -0.165 4.165 19 O -0.400 6.400 20 C 0.025 3.975 21 C 0.016 3.984 22 H 0.051 0.949 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.052 0.948 26 H 0.033 0.967 27 H 0.262 0.738 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.036 0.964 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.145 9.529 -5.687 13.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.141 4.141 3 C 0.087 3.913 4 H -0.007 1.007 5 C -0.563 4.563 6 H 0.071 0.929 7 C -0.186 4.186 8 N -0.559 5.559 9 Si 0.783 3.217 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.198 1.198 13 N -0.207 5.207 14 C -0.102 4.102 15 C -0.121 4.121 16 C 0.040 3.960 17 H 0.069 0.931 18 C -0.222 4.222 19 O -0.319 6.319 20 C -0.071 4.071 21 C -0.113 4.113 22 H 0.070 0.930 23 H 0.088 0.912 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.128 0.872 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.920 8.872 -6.148 13.387 hybrid contribution 0.877 0.256 1.567 1.814 sum -7.043 9.127 -4.580 12.405 Atomic orbital electron populations 1.22048 0.96402 1.00958 1.01166 1.21325 0.94405 0.98546 0.99834 1.19551 0.94501 0.91901 0.85374 1.00672 1.21333 0.92263 1.41978 1.00695 0.92937 1.25717 1.02645 0.94889 0.95361 1.70045 1.36702 1.43087 1.06017 0.85614 0.80270 0.78611 0.77174 1.19530 1.20841 1.19804 1.68866 1.06104 1.11013 1.34688 1.23434 0.97263 0.90551 0.98919 1.22891 0.94749 0.93432 1.01034 1.22080 0.80963 0.94646 0.98346 0.93056 1.22192 1.01936 0.96598 1.01475 1.87870 1.16727 1.75534 1.51776 1.22936 0.96092 0.96889 0.91163 1.23682 0.92735 0.95772 0.99074 0.92957 0.91186 0.94723 0.92889 0.94813 0.92913 0.93375 0.90439 0.87179 0.91516 0.91057 0.91398 0.88225 0.94579 0.92878 0.89785 0.93406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.06 8.84 71.98 0.64 -5.42 16 2 C -0.10 -5.11 5.49 30.59 0.17 -4.95 16 3 C 0.19 10.09 1.24 44.17 0.05 10.14 16 4 H -0.02 -1.40 7.56 -2.39 -0.02 -1.42 16 5 C -0.52 -29.54 8.10 25.60 0.21 -29.33 16 6 H 0.05 2.96 7.78 -2.91 -0.02 2.94 16 7 C 0.01 0.72 5.30 84.66 0.45 1.17 16 8 N -0.92 -53.77 11.72 21.45 0.25 -53.52 16 9 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 13 N -0.48 -21.31 6.12 -906.83 -5.55 -26.86 16 14 C 0.03 1.06 6.63 83.57 0.55 1.62 16 15 C -0.10 -3.22 3.68 -10.45 -0.04 -3.26 16 16 C 0.10 2.64 2.56 30.59 0.08 2.71 16 17 H 0.05 1.46 7.54 -2.39 -0.02 1.44 16 18 C -0.16 -3.54 9.53 71.98 0.69 -2.85 16 19 O -0.40 -10.80 10.16 -148.98 -1.51 -12.32 16 20 C 0.03 0.51 10.82 113.37 1.23 1.74 16 21 C 0.02 0.60 4.71 83.58 0.39 0.99 16 22 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.07 2.63 4.59 -2.39 -0.01 2.62 16 24 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.05 2.95 6.42 -2.39 -0.02 2.93 16 26 H 0.03 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.05 1.99 7.61 -2.39 -0.02 1.97 16 29 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 30 H 0.11 3.25 8.14 -2.38 -0.02 3.23 16 31 H 0.07 1.23 7.87 -2.39 -0.02 1.21 16 32 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.10 1.64 8.14 -2.39 -0.02 1.63 16 35 H 0.04 0.76 8.08 -2.39 -0.02 0.74 16 36 H 0.05 0.90 7.87 -2.39 -0.02 0.88 16 37 H 0.08 2.94 6.72 -2.39 -0.02 2.92 16 38 H 0.05 1.88 7.23 -2.39 -0.02 1.86 16 Total: -1.00 -62.18 298.47 0.63 -61.54 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 1.00 Total: 12.33 kcal Atomic # 6 Polarization: -31.84 SS G_CDS: 4.41 Total: -27.43 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: -5.30 Total: -80.38 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -1.51 Total: -12.32 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -62.18 0.63 -61.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179969.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.310 kcal (2) G-P(sol) polarization free energy of solvation -62.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds