Wall clock time and date at job start Sun Mar 29 2020 21:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47273 * 2 1 4 4 H 1.09000 * 109.46960 * 55.00387 * 3 2 1 5 5 C 1.50698 * 109.47142 * 175.00437 * 3 2 1 6 6 H 1.08002 * 120.00510 * 114.55059 * 5 3 2 7 7 C 1.37882 * 120.00114 * 294.54593 * 5 3 2 8 8 N 1.31517 * 119.99838 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00282 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47400 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.47077 * 120.00184 * 9 7 5 12 12 H 1.48493 * 109.47361 * 240.00269 * 9 7 5 13 13 N 1.46904 * 109.47125 * 295.00216 * 3 2 1 14 14 C 1.47483 * 110.99903 * 173.20527 * 13 3 2 15 15 C 1.53509 * 87.93285 * 221.30049 * 14 13 3 16 16 C 1.52993 * 114.17270 * 139.67225 * 15 14 13 17 17 H 1.09005 * 109.46929 * 211.15333 * 16 15 14 18 18 C 1.53001 * 109.47018 * 91.16016 * 16 15 14 19 19 O 1.42898 * 109.47346 * 331.15400 * 16 15 14 20 20 C 1.42892 * 114.00247 * 210.00074 * 19 16 15 21 21 C 1.47480 * 110.99760 * 77.23546 * 13 3 2 22 22 H 1.09005 * 109.47321 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47327 * 59.99642 * 1 2 3 24 24 H 1.09005 * 109.47111 * 300.00039 * 1 2 3 25 25 H 1.08995 * 109.47488 * 120.00593 * 2 1 3 26 26 H 1.09005 * 109.47111 * 239.99960 * 2 1 3 27 27 H 0.97000 * 120.00144 * 179.97438 * 8 7 5 28 28 H 1.09001 * 113.47416 * 336.06315 * 14 13 3 29 29 H 1.08996 * 113.47779 * 106.52710 * 14 13 3 30 30 H 1.09010 * 114.33948 * 272.36511 * 15 14 13 31 31 H 1.08997 * 109.46912 * 299.99231 * 18 16 15 32 32 H 1.08995 * 109.47509 * 60.00156 * 18 16 15 33 33 H 1.09004 * 109.46720 * 180.02562 * 18 16 15 34 34 H 1.09001 * 109.47264 * 60.00024 * 20 19 16 35 35 H 1.09001 * 109.47379 * 180.02562 * 20 19 16 36 36 H 1.09000 * 109.47451 * 300.00195 * 20 19 16 37 37 H 1.08999 * 113.47170 * 253.46993 * 21 13 3 38 38 H 1.08999 * 113.47646 * 23.93825 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5418 1.4442 0.1237 6 1 4.1504 1.8086 -0.6907 7 6 4.1392 0.9807 1.2768 8 7 3.3982 0.5366 2.2684 9 14 6.0008 0.9822 1.4299 10 1 6.5995 1.5273 0.1850 11 1 6.4020 1.8278 2.5830 12 1 6.4811 -0.4065 1.6437 13 7 1.6513 2.0993 -1.2552 14 6 1.9836 3.5359 -1.2249 15 6 0.6322 3.8059 -1.9012 16 6 -0.1044 5.0333 -1.3614 17 1 -1.1801 4.8730 -1.4349 18 6 0.2851 6.2640 -2.1829 19 8 0.2539 5.2406 0.0063 20 6 -0.7741 5.8487 0.7908 21 6 0.2281 2.4851 -1.2311 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 3.8184 0.2102 3.0795 28 1 2.0538 3.9441 -0.2167 29 1 2.8401 3.7966 -1.8465 30 1 0.6585 3.7641 -2.9902 31 1 1.3607 6.4243 -2.1093 32 1 0.0117 6.1059 -3.2261 33 1 -0.2394 7.1386 -1.7979 34 1 -1.6603 5.2142 0.7831 35 1 -0.4241 5.9721 1.8156 36 1 -1.0219 6.8240 0.3719 37 1 -0.4031 1.8554 -1.8581 38 1 -0.1702 2.6131 -0.2246 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179971.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:49 Heat of formation + Delta-G solvation = -14.440148 kcal Electronic energy + Delta-G solvation = -16912.022218 eV Core-core repulsion = 14369.826840 eV Total energy + Delta-G solvation = -2542.195378 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.77852 -37.36477 -34.00694 -31.82662 -31.06475 -28.21961 -26.61808 -25.38862 -24.75854 -23.05266 -21.43929 -19.32153 -18.84366 -16.51506 -16.16924 -15.54475 -15.37277 -14.64168 -14.37698 -13.50213 -13.38653 -12.90044 -12.67208 -12.39137 -12.17397 -11.86532 -11.80714 -11.43431 -11.37060 -11.02021 -10.90334 -10.67263 -10.65884 -10.49652 -10.00039 -9.57495 -9.56482 -9.45075 -8.92175 -8.70019 -8.36220 -7.58443 -5.95241 -3.98213 3.34005 3.41507 3.46902 3.98141 4.47976 4.85876 4.98394 5.25531 5.36571 5.40849 5.43260 5.44669 5.57616 5.76064 5.77663 5.82846 6.03802 6.18861 6.24558 6.27494 6.35590 6.40979 6.44703 6.59659 6.72314 6.89997 6.96478 7.03872 7.22531 7.45636 7.52961 7.62615 7.90642 8.12390 8.38394 8.60183 9.09736 9.66167 11.12782 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026472 B = 0.008293 C = 0.007484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.480339 B = 3375.500382 C = 3740.436569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.106 4.106 3 C 0.187 3.813 4 H 0.013 0.987 5 C -0.501 4.501 6 H 0.060 0.940 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.470 5.470 14 C 0.036 3.964 15 C -0.134 4.134 16 C 0.095 3.905 17 H 0.056 0.944 18 C -0.170 4.170 19 O -0.373 6.373 20 C 0.032 3.968 21 C 0.009 3.991 22 H 0.030 0.970 23 H 0.053 0.947 24 H 0.039 0.961 25 H 0.083 0.917 26 H 0.039 0.961 27 H 0.259 0.741 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.038 0.962 35 H 0.083 0.917 36 H 0.035 0.965 37 H 0.069 0.931 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.657 8.492 -5.399 13.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.145 4.145 3 C 0.080 3.920 4 H 0.030 0.970 5 C -0.540 4.540 6 H 0.078 0.922 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.193 5.193 14 C -0.094 4.094 15 C -0.153 4.153 16 C 0.037 3.963 17 H 0.074 0.926 18 C -0.227 4.227 19 O -0.291 6.291 20 C -0.065 4.065 21 C -0.120 4.120 22 H 0.049 0.951 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.101 0.899 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.101 0.899 36 H 0.053 0.947 37 H 0.087 0.913 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.163 7.882 -5.636 12.670 hybrid contribution 0.417 0.463 0.924 1.114 sum -7.746 8.345 -4.712 12.323 Atomic orbital electron populations 1.22174 0.99612 0.99289 1.00593 1.21469 0.91540 0.99705 1.01736 1.19775 0.95670 0.91322 0.85275 0.96972 1.21125 0.90950 1.41258 1.00624 0.92194 1.24938 0.98093 0.95461 0.95734 1.69942 1.34683 1.42950 1.05611 0.86511 0.85856 0.77541 0.77936 1.19763 1.21178 1.21103 1.68908 1.03340 1.10189 1.36865 1.23317 0.94541 0.91112 1.00384 1.23128 0.99136 0.93210 0.99843 1.21920 0.97751 0.94626 0.82027 0.92569 1.22232 1.02864 0.97795 0.99819 1.88037 1.39298 1.81238 1.20572 1.22733 0.91474 0.96124 0.96157 1.23827 0.95127 0.93765 0.99313 0.95096 0.92829 0.94223 0.89882 0.94175 0.93153 0.90253 0.91787 0.88092 0.91578 0.91870 0.93121 0.94380 0.89870 0.94670 0.91267 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 8.84 37.15 0.33 -2.97 16 2 C -0.11 -2.64 5.49 -26.74 -0.15 -2.78 16 3 C 0.19 4.85 1.24 -68.86 -0.09 4.77 16 4 H 0.01 0.36 7.56 -51.93 -0.39 -0.03 16 5 C -0.50 -14.24 8.10 -34.44 -0.28 -14.52 16 6 H 0.06 1.73 7.78 -52.49 -0.41 1.32 16 7 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 8 N -0.89 -26.12 11.72 55.43 0.65 -25.47 16 9 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 10 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 N -0.47 -10.58 6.12 -237.98 -1.46 -12.03 16 14 C 0.04 0.73 6.45 -7.54 -0.05 0.68 16 15 C -0.13 -2.19 3.94 -90.09 -0.36 -2.55 16 16 C 0.09 1.34 2.78 -26.73 -0.07 1.26 16 17 H 0.06 0.71 7.79 -51.93 -0.40 0.30 16 18 C -0.17 -2.00 9.51 37.16 0.35 -1.64 16 19 O -0.37 -6.05 8.50 -35.23 -0.30 -6.35 16 20 C 0.03 0.40 10.82 101.05 1.09 1.49 16 21 C 0.01 0.17 4.82 -7.54 -0.04 0.13 16 22 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 1.03 4.59 -51.93 -0.24 0.79 16 24 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.08 2.28 6.42 -51.93 -0.33 1.95 16 26 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.08 1.81 6.48 -51.93 -0.34 1.48 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.10 1.50 8.12 -51.92 -0.42 1.07 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.53 7.87 -51.93 -0.41 0.12 16 34 H 0.04 0.43 8.09 -51.93 -0.42 0.01 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.03 0.36 7.87 -51.93 -0.41 -0.05 16 37 H 0.07 1.20 6.72 -51.93 -0.35 0.85 16 38 H 0.06 1.25 7.12 -51.93 -0.37 0.88 16 LS Contribution 296.21 15.07 4.46 4.46 Total: -1.00 -30.01 296.21 -7.59 -37.60 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.59 Total: -0.59 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: 0.65 Total: -14.56 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.81 Total: -37.51 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.30 Total: -6.35 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.01 -7.59 -37.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179971.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.164 kcal (2) G-P(sol) polarization free energy of solvation -30.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds