Wall clock time and date at job start Sun Mar 29 2020 21:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47273 * 2 1 4 4 H 1.09000 * 109.46960 * 55.00387 * 3 2 1 5 5 C 1.50698 * 109.47142 * 175.00437 * 3 2 1 6 6 H 1.08002 * 120.00510 * 114.55059 * 5 3 2 7 7 C 1.37882 * 120.00114 * 294.54593 * 5 3 2 8 8 N 1.31517 * 119.99838 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00282 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47400 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.47077 * 120.00184 * 9 7 5 12 12 H 1.48493 * 109.47361 * 240.00269 * 9 7 5 13 13 N 1.46904 * 109.47125 * 295.00216 * 3 2 1 14 14 C 1.47483 * 110.99903 * 173.20527 * 13 3 2 15 15 C 1.53509 * 87.93285 * 221.30049 * 14 13 3 16 16 C 1.52993 * 114.17270 * 139.67225 * 15 14 13 17 17 H 1.09005 * 109.46929 * 211.15333 * 16 15 14 18 18 C 1.53001 * 109.47018 * 91.16016 * 16 15 14 19 19 O 1.42898 * 109.47346 * 331.15400 * 16 15 14 20 20 C 1.42892 * 114.00247 * 210.00074 * 19 16 15 21 21 C 1.47480 * 110.99760 * 77.23546 * 13 3 2 22 22 H 1.09005 * 109.47321 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47327 * 59.99642 * 1 2 3 24 24 H 1.09005 * 109.47111 * 300.00039 * 1 2 3 25 25 H 1.08995 * 109.47488 * 120.00593 * 2 1 3 26 26 H 1.09005 * 109.47111 * 239.99960 * 2 1 3 27 27 H 0.97000 * 120.00144 * 179.97438 * 8 7 5 28 28 H 1.09001 * 113.47416 * 336.06315 * 14 13 3 29 29 H 1.08996 * 113.47779 * 106.52710 * 14 13 3 30 30 H 1.09010 * 114.33948 * 272.36511 * 15 14 13 31 31 H 1.08997 * 109.46912 * 299.99231 * 18 16 15 32 32 H 1.08995 * 109.47509 * 60.00156 * 18 16 15 33 33 H 1.09004 * 109.46720 * 180.02562 * 18 16 15 34 34 H 1.09001 * 109.47264 * 60.00024 * 20 19 16 35 35 H 1.09001 * 109.47379 * 180.02562 * 20 19 16 36 36 H 1.09000 * 109.47451 * 300.00195 * 20 19 16 37 37 H 1.08999 * 113.47170 * 253.46993 * 21 13 3 38 38 H 1.08999 * 113.47646 * 23.93825 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5418 1.4442 0.1237 6 1 4.1504 1.8086 -0.6907 7 6 4.1392 0.9807 1.2768 8 7 3.3982 0.5366 2.2684 9 14 6.0008 0.9822 1.4299 10 1 6.5995 1.5273 0.1850 11 1 6.4020 1.8278 2.5830 12 1 6.4811 -0.4065 1.6437 13 7 1.6513 2.0993 -1.2552 14 6 1.9836 3.5359 -1.2249 15 6 0.6322 3.8059 -1.9012 16 6 -0.1044 5.0333 -1.3614 17 1 -1.1801 4.8730 -1.4349 18 6 0.2851 6.2640 -2.1829 19 8 0.2539 5.2406 0.0063 20 6 -0.7741 5.8487 0.7908 21 6 0.2281 2.4851 -1.2311 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 3.8184 0.2102 3.0795 28 1 2.0538 3.9441 -0.2167 29 1 2.8401 3.7966 -1.8465 30 1 0.6585 3.7641 -2.9902 31 1 1.3607 6.4243 -2.1093 32 1 0.0117 6.1059 -3.2261 33 1 -0.2394 7.1386 -1.7979 34 1 -1.6603 5.2142 0.7831 35 1 -0.4241 5.9721 1.8156 36 1 -1.0219 6.8240 0.3719 37 1 -0.4031 1.8554 -1.8581 38 1 -0.1702 2.6131 -0.2246 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255179971.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:49 Heat of formation + Delta-G solvation = -35.453285 kcal Electronic energy + Delta-G solvation = -16912.933416 eV Core-core repulsion = 14369.826840 eV Total energy + Delta-G solvation = -2543.106577 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.31063 -38.63987 -35.89785 -33.70695 -32.43633 -29.97714 -27.72043 -27.01611 -26.39837 -24.84980 -22.83272 -21.22888 -20.28017 -18.52129 -17.40800 -17.26063 -16.75767 -16.26182 -15.83255 -15.19931 -14.95402 -14.39363 -14.08849 -13.86682 -13.57666 -13.36494 -13.17694 -13.11972 -12.91429 -12.85059 -12.62306 -12.32353 -12.13878 -11.96441 -11.95359 -11.49105 -11.07817 -10.87923 -10.72774 -10.50255 -10.32114 -9.43048 -8.13796 -6.24552 1.37387 1.38344 1.51016 2.40574 2.92063 3.15111 3.48701 3.58132 4.03006 4.20469 4.39806 4.46820 4.47925 4.50225 4.57662 4.62222 4.64718 4.77050 4.82021 4.86357 4.87586 4.94356 5.01703 5.09292 5.12093 5.21298 5.29994 5.34386 5.49172 5.55090 5.59173 5.74992 6.11331 6.30996 6.42816 6.62159 6.90988 7.43989 8.93481 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026472 B = 0.008293 C = 0.007484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.480339 B = 3375.500382 C = 3740.436569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 C 0.197 3.803 4 H -0.028 1.028 5 C -0.521 4.521 6 H 0.048 0.952 7 C 0.011 3.989 8 N -0.919 5.919 9 Si 0.957 3.043 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.277 1.277 13 N -0.484 5.484 14 C 0.029 3.971 15 C -0.107 4.107 16 C 0.093 3.907 17 H 0.079 0.921 18 C -0.164 4.164 19 O -0.411 6.411 20 C 0.027 3.973 21 C 0.010 3.990 22 H 0.052 0.948 23 H 0.072 0.928 24 H 0.032 0.968 25 H 0.050 0.950 26 H 0.034 0.966 27 H 0.261 0.739 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.126 0.874 31 H 0.050 0.950 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.639 9.269 -6.844 15.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.141 4.141 3 C 0.089 3.911 4 H -0.010 1.010 5 C -0.560 4.560 6 H 0.067 0.933 7 C -0.188 4.188 8 N -0.559 5.559 9 Si 0.783 3.217 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.203 1.203 13 N -0.207 5.207 14 C -0.100 4.100 15 C -0.126 4.126 16 C 0.035 3.965 17 H 0.097 0.903 18 C -0.221 4.221 19 O -0.330 6.330 20 C -0.069 4.069 21 C -0.119 4.119 22 H 0.071 0.929 23 H 0.091 0.909 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.144 0.856 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.158 8.667 -7.090 14.466 hybrid contribution 0.702 0.243 1.378 1.566 sum -8.456 8.910 -5.712 13.547 Atomic orbital electron populations 1.22036 0.96228 1.00945 1.01196 1.21322 0.94597 0.98450 0.99746 1.19499 0.94250 0.91783 0.85562 1.01046 1.21396 0.92516 1.41490 1.00591 0.93343 1.25722 1.02662 0.95029 0.95382 1.70062 1.36456 1.43357 1.05986 0.85514 0.80376 0.77831 0.77981 1.19386 1.20562 1.20273 1.68843 1.06200 1.11217 1.34424 1.23249 0.97262 0.90121 0.99369 1.23091 0.95474 0.93247 1.00770 1.22040 0.98560 0.94423 0.81495 0.90277 1.22186 1.02033 0.97152 1.00738 1.88002 1.41199 1.81937 1.21907 1.22882 0.90907 0.97282 0.95829 1.23825 0.93079 0.95690 0.99312 0.92896 0.90895 0.94893 0.93093 0.94766 0.92992 0.93275 0.92167 0.85570 0.93130 0.89647 0.91610 0.93506 0.90206 0.92288 0.89060 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.97 8.84 71.98 0.64 -5.33 16 2 C -0.10 -5.19 5.49 30.59 0.17 -5.03 16 3 C 0.20 10.57 1.24 44.17 0.05 10.63 16 4 H -0.03 -1.70 7.56 -2.39 -0.02 -1.72 16 5 C -0.52 -30.60 8.10 25.60 0.21 -30.39 16 6 H 0.05 2.88 7.78 -2.91 -0.02 2.86 16 7 C 0.01 0.62 5.30 84.66 0.45 1.07 16 8 N -0.92 -55.32 11.72 21.45 0.25 -55.07 16 9 Si 0.96 45.83 29.54 68.60 2.03 47.86 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 N -0.48 -21.90 6.12 -906.83 -5.55 -27.44 16 14 C 0.03 1.22 6.45 83.57 0.54 1.76 16 15 C -0.11 -3.29 3.94 -10.45 -0.04 -3.33 16 16 C 0.09 2.38 2.78 30.59 0.09 2.47 16 17 H 0.08 1.70 7.79 -2.38 -0.02 1.68 16 18 C -0.16 -3.36 9.51 71.98 0.68 -2.67 16 19 O -0.41 -13.07 8.50 -148.98 -1.27 -14.33 16 20 C 0.03 0.64 10.82 113.37 1.23 1.86 16 21 C 0.01 0.35 4.82 83.58 0.40 0.76 16 22 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 23 H 0.07 2.65 4.59 -2.39 -0.01 2.64 16 24 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.05 2.89 6.42 -2.39 -0.02 2.87 16 26 H 0.03 1.72 8.14 -2.38 -0.02 1.70 16 27 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 28 H 0.05 2.35 6.48 -2.39 -0.02 2.33 16 29 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.13 3.28 8.12 -2.38 -0.02 3.26 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 1.16 7.87 -2.39 -0.02 1.14 16 34 H 0.05 0.99 8.09 -2.39 -0.02 0.97 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 36 H 0.06 1.08 7.87 -2.39 -0.02 1.06 16 37 H 0.09 2.89 6.72 -2.39 -0.02 2.87 16 38 H 0.05 1.89 7.12 -2.39 -0.02 1.87 16 Total: -1.00 -66.87 296.21 0.88 -65.99 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 1.00 Total: 11.22 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: 4.41 Total: -28.22 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -5.30 Total: -82.51 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -1.27 Total: -14.33 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -66.87 0.88 -65.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179971.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.534 kcal (2) G-P(sol) polarization free energy of solvation -66.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds