Wall clock time and date at job start Sun Mar 29 2020 22:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53070 * 1 3 3 H 1.10910 * 106.80981 * 2 1 4 4 C 1.52580 * 109.99148 * 244.03319 * 2 1 3 5 5 C 1.52975 * 110.10420 * 282.10875 * 4 2 1 6 6 H 1.08747 * 110.29261 * 61.80425 * 5 4 2 7 7 N 1.47152 * 109.31315 * 181.75870 * 5 4 2 8 8 C 1.46902 * 110.99949 * 303.95063 * 7 5 4 9 9 C 1.46908 * 111.00014 * 179.97438 * 7 5 4 10 10 C 1.50700 * 109.47220 * 189.99987 * 9 7 5 11 11 H 1.08002 * 119.99919 * 359.97438 * 10 9 7 12 12 C 1.37868 * 120.00177 * 179.97438 * 10 9 7 13 13 N 1.31516 * 119.99819 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00296 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47069 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47146 * 119.99910 * 14 12 10 17 17 H 1.48504 * 109.47146 * 240.00288 * 14 12 10 18 18 C 1.52967 * 108.51594 * 300.90183 * 5 4 2 19 19 C 1.52567 * 110.17276 * 58.92090 * 18 5 4 20 20 H 1.10929 * 107.14500 * 193.97993 * 19 18 5 21 21 C 1.53086 * 109.98557 * 78.26803 * 19 18 5 22 22 O 1.40748 * 113.15921 * 312.75730 * 19 18 5 23 23 H 1.08997 * 109.47217 * 302.29662 * 1 2 3 24 24 H 1.09004 * 109.47303 * 62.29745 * 1 2 3 25 25 H 1.08999 * 109.47377 * 182.29835 * 1 2 3 26 26 H 1.09226 * 109.57200 * 42.42025 * 4 2 1 27 27 H 1.09224 * 109.57524 * 161.78900 * 4 2 1 28 28 H 1.08995 * 109.46870 * 60.00020 * 8 7 5 29 29 H 1.09006 * 109.47101 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47018 * 299.99871 * 8 7 5 31 31 H 1.08996 * 109.46817 * 310.00043 * 9 7 5 32 32 H 1.09003 * 109.46911 * 69.99810 * 9 7 5 33 33 H 0.97005 * 119.99692 * 180.02562 * 13 12 10 34 34 H 1.09233 * 109.36179 * 298.42787 * 18 5 4 35 35 H 1.09243 * 109.34139 * 179.37752 * 18 5 4 36 36 H 1.09001 * 109.46795 * 293.58019 * 21 19 18 37 37 H 1.09001 * 109.47039 * 53.57637 * 21 19 18 38 38 H 1.09000 * 109.47015 * 173.57932 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5307 0.0000 0.0000 3 1 1.8514 1.0617 0.0000 4 6 2.0523 -0.6278 -1.2891 5 6 1.9489 -2.1521 -1.2110 6 1 0.9101 -2.4545 -1.1019 7 7 2.4949 -2.7407 -2.4442 8 6 1.8134 -2.2046 -3.6300 9 6 2.4142 -4.2072 -2.4081 10 6 3.1958 -4.7818 -3.5613 11 1 3.7016 -4.1235 -4.2522 12 6 3.2653 -6.1478 -3.7344 13 7 2.6499 -6.9494 -2.8928 14 14 4.2336 -6.8601 -5.1643 15 1 4.8272 -5.7553 -5.9594 16 1 5.3162 -7.7328 -4.6431 17 1 3.3265 -7.6585 -6.0275 18 6 2.7700 -2.6339 -0.0137 19 6 2.2501 -1.9970 1.2714 20 1 3.0172 -2.1673 2.0544 21 6 0.9792 -2.7143 1.7340 22 8 2.0484 -0.6085 1.1588 23 1 -0.3633 0.5491 0.8686 24 1 -0.3634 0.4778 -0.9099 25 1 -0.3634 -1.0268 0.0412 26 1 1.4635 -0.2680 -2.1357 27 1 3.0961 -0.3429 -1.4386 28 1 1.9486 -1.1238 -3.6690 29 1 2.2360 -2.6567 -4.5274 30 1 0.7497 -2.4360 -3.5734 31 1 2.8315 -4.5710 -1.4692 32 1 1.3716 -4.5157 -2.4861 33 1 2.6991 -7.9106 -3.0144 34 1 3.8176 -2.3610 -0.1596 35 1 2.6964 -3.7213 0.0614 36 1 0.1806 -2.5396 1.0130 37 1 1.1730 -3.7843 1.8094 38 1 0.6793 -2.3297 2.7088 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257085890.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:33 Heat of formation + Delta-G solvation = -52.434112 kcal Electronic energy + Delta-G solvation = -16921.866598 eV Core-core repulsion = 14378.023677 eV Total energy + Delta-G solvation = -2543.842920 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.72772 -36.51969 -33.29690 -32.86437 -31.62215 -29.06181 -27.56102 -25.92133 -24.77983 -22.84055 -22.25719 -20.32040 -18.14465 -16.73776 -16.03917 -15.60731 -14.85412 -14.68909 -14.46801 -13.82755 -13.58852 -13.35660 -13.11421 -12.53604 -12.43375 -12.11139 -12.05734 -11.92438 -11.34644 -11.11091 -10.91227 -10.78930 -10.69971 -10.52759 -10.38563 -10.16367 -9.77558 -9.50812 -9.21442 -9.15091 -8.42940 -7.22955 -6.03636 -4.04440 3.30061 3.37499 3.42438 3.81199 4.41554 4.84302 4.91673 5.03539 5.15617 5.20816 5.31595 5.40567 5.55906 5.63921 5.68234 5.68856 5.81227 5.97579 6.01544 6.06495 6.14595 6.22940 6.25711 6.31687 6.40229 6.46000 6.56690 6.71554 6.77700 7.30658 7.34292 7.80404 7.94506 8.09577 8.20812 8.55567 9.03556 9.59687 11.07306 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.040948 B = 0.006850 C = 0.006296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.626636 B = 4086.491195 C = 4446.214867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.105 3.895 3 H 0.086 0.914 4 C -0.145 4.145 5 C 0.088 3.912 6 H 0.032 0.968 7 N -0.537 5.537 8 C 0.036 3.964 9 C 0.190 3.810 10 C -0.506 4.506 11 H 0.063 0.937 12 C 0.054 3.946 13 N -0.899 5.899 14 Si 0.897 3.103 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.285 1.285 18 C -0.144 4.144 19 C 0.104 3.896 20 H 0.088 0.912 21 C -0.180 4.180 22 O -0.383 6.383 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.008 0.992 31 H 0.036 0.964 32 H -0.012 1.012 33 H 0.260 0.740 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.329 11.302 6.141 13.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.047 3.953 3 H 0.104 0.896 4 C -0.183 4.183 5 C -0.021 4.021 6 H 0.050 0.950 7 N -0.262 5.262 8 C -0.113 4.113 9 C 0.065 3.935 10 C -0.544 4.544 11 H 0.081 0.919 12 C -0.147 4.147 13 N -0.539 5.539 14 Si 0.725 3.275 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.211 1.211 18 C -0.182 4.182 19 C 0.046 3.954 20 H 0.106 0.894 21 C -0.237 4.237 22 O -0.303 6.303 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.027 0.973 31 H 0.053 0.947 32 H 0.005 0.995 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.814 11.334 6.269 13.254 hybrid contribution -0.577 -1.076 -1.025 1.594 sum -3.390 10.258 5.244 12.010 Atomic orbital electron populations 1.22516 0.97016 1.02491 1.01766 1.21779 0.92516 0.96006 0.84968 0.89628 1.22267 1.02640 0.96232 0.97194 1.21339 0.95878 0.93140 0.91787 0.94990 1.62248 1.54321 1.09900 0.99696 1.22243 0.95448 0.98251 0.95359 1.19791 0.95329 0.80178 0.98237 1.21214 1.31010 0.91202 1.11016 0.91858 1.24988 0.95918 0.97109 0.96656 1.69970 1.43635 1.03477 1.36811 0.86454 0.79737 0.79044 0.82269 1.19678 1.20992 1.21143 1.22227 1.00769 1.01979 0.93233 1.21849 0.96256 0.80086 0.97170 0.89385 1.22509 0.99015 1.00897 1.01289 1.86321 1.83633 1.21899 1.38408 0.92343 0.91937 0.92318 0.91003 0.90618 0.93393 0.90740 0.97322 0.94653 0.99454 0.93014 0.90626 0.89832 0.92530 0.91471 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 9.38 37.19 0.35 -1.83 16 2 C 0.11 1.42 3.43 -26.91 -0.09 1.32 16 3 H 0.09 1.01 8.28 -50.83 -0.42 0.59 16 4 C -0.15 -2.19 4.37 -26.96 -0.12 -2.31 16 5 C 0.09 1.59 1.86 -67.60 -0.13 1.47 16 6 H 0.03 0.62 6.86 -52.07 -0.36 0.26 16 7 N -0.54 -11.67 4.61 -236.27 -1.09 -12.76 16 8 C 0.04 0.70 8.92 60.07 0.54 1.24 16 9 C 0.19 4.94 4.55 -4.97 -0.02 4.92 16 10 C -0.51 -14.26 8.46 -34.44 -0.29 -14.55 16 11 H 0.06 1.78 7.12 -52.49 -0.37 1.40 16 12 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 13 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 14 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 15 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 C -0.14 -2.51 4.57 -26.97 -0.12 -2.63 16 19 C 0.10 1.54 3.43 -26.91 -0.09 1.44 16 20 H 0.09 1.18 8.28 -50.82 -0.42 0.76 16 21 C -0.18 -2.46 9.38 37.20 0.35 -2.11 16 22 O -0.38 -5.72 9.72 -33.72 -0.33 -6.05 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.67 8.04 -51.93 -0.42 0.26 16 25 H 0.06 0.78 5.57 -51.93 -0.29 0.49 16 26 H 0.07 1.02 6.24 -51.80 -0.32 0.70 16 27 H 0.08 1.18 8.16 -51.80 -0.42 0.76 16 28 H 0.05 0.80 6.25 -51.93 -0.32 0.47 16 29 H 0.07 1.57 6.76 -51.93 -0.35 1.22 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.04 0.97 5.89 -51.93 -0.31 0.66 16 32 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 34 H 0.08 1.36 8.16 -51.80 -0.42 0.94 16 35 H 0.08 1.60 6.11 -51.79 -0.32 1.28 16 36 H 0.06 0.81 5.60 -51.93 -0.29 0.52 16 37 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 288.51 15.07 4.35 4.35 Total: -1.00 -29.68 288.51 -7.36 -37.04 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -6.28 Total: -1.67 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 0.27 Total: -11.61 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: -0.35 Total: -38.73 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.33 Total: -6.05 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.68 -7.36 -37.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257085890.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.396 kcal (2) G-P(sol) polarization free energy of solvation -29.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds