Wall clock time and date at job start Sun Mar 29 2020 22:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53070 * 1 3 3 H 1.10910 * 106.80981 * 2 1 4 4 C 1.52580 * 109.99148 * 244.03319 * 2 1 3 5 5 C 1.52975 * 110.10420 * 282.10875 * 4 2 1 6 6 H 1.08747 * 110.29261 * 61.80425 * 5 4 2 7 7 N 1.47152 * 109.31315 * 181.75870 * 5 4 2 8 8 C 1.46902 * 110.99949 * 303.95063 * 7 5 4 9 9 C 1.46908 * 111.00014 * 179.97438 * 7 5 4 10 10 C 1.50700 * 109.47220 * 189.99987 * 9 7 5 11 11 H 1.08002 * 119.99919 * 359.97438 * 10 9 7 12 12 C 1.37868 * 120.00177 * 179.97438 * 10 9 7 13 13 N 1.31516 * 119.99819 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00296 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47069 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47146 * 119.99910 * 14 12 10 17 17 H 1.48504 * 109.47146 * 240.00288 * 14 12 10 18 18 C 1.52967 * 108.51594 * 300.90183 * 5 4 2 19 19 C 1.52567 * 110.17276 * 58.92090 * 18 5 4 20 20 H 1.10929 * 107.14500 * 193.97993 * 19 18 5 21 21 C 1.53086 * 109.98557 * 78.26803 * 19 18 5 22 22 O 1.40748 * 113.15921 * 312.75730 * 19 18 5 23 23 H 1.08997 * 109.47217 * 302.29662 * 1 2 3 24 24 H 1.09004 * 109.47303 * 62.29745 * 1 2 3 25 25 H 1.08999 * 109.47377 * 182.29835 * 1 2 3 26 26 H 1.09226 * 109.57200 * 42.42025 * 4 2 1 27 27 H 1.09224 * 109.57524 * 161.78900 * 4 2 1 28 28 H 1.08995 * 109.46870 * 60.00020 * 8 7 5 29 29 H 1.09006 * 109.47101 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47018 * 299.99871 * 8 7 5 31 31 H 1.08996 * 109.46817 * 310.00043 * 9 7 5 32 32 H 1.09003 * 109.46911 * 69.99810 * 9 7 5 33 33 H 0.97005 * 119.99692 * 180.02562 * 13 12 10 34 34 H 1.09233 * 109.36179 * 298.42787 * 18 5 4 35 35 H 1.09243 * 109.34139 * 179.37752 * 18 5 4 36 36 H 1.09001 * 109.46795 * 293.58019 * 21 19 18 37 37 H 1.09001 * 109.47039 * 53.57637 * 21 19 18 38 38 H 1.09000 * 109.47015 * 173.57932 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5307 0.0000 0.0000 3 1 1.8514 1.0617 0.0000 4 6 2.0523 -0.6278 -1.2891 5 6 1.9489 -2.1521 -1.2110 6 1 0.9101 -2.4545 -1.1019 7 7 2.4949 -2.7407 -2.4442 8 6 1.8134 -2.2046 -3.6300 9 6 2.4142 -4.2072 -2.4081 10 6 3.1958 -4.7818 -3.5613 11 1 3.7016 -4.1235 -4.2522 12 6 3.2653 -6.1478 -3.7344 13 7 2.6499 -6.9494 -2.8928 14 14 4.2336 -6.8601 -5.1643 15 1 4.8272 -5.7553 -5.9594 16 1 5.3162 -7.7328 -4.6431 17 1 3.3265 -7.6585 -6.0275 18 6 2.7700 -2.6339 -0.0137 19 6 2.2501 -1.9970 1.2714 20 1 3.0172 -2.1673 2.0544 21 6 0.9792 -2.7143 1.7340 22 8 2.0484 -0.6085 1.1588 23 1 -0.3633 0.5491 0.8686 24 1 -0.3634 0.4778 -0.9099 25 1 -0.3634 -1.0268 0.0412 26 1 1.4635 -0.2680 -2.1357 27 1 3.0961 -0.3429 -1.4386 28 1 1.9486 -1.1238 -3.6690 29 1 2.2360 -2.6567 -4.5274 30 1 0.7497 -2.4360 -3.5734 31 1 2.8315 -4.5710 -1.4692 32 1 1.3716 -4.5157 -2.4861 33 1 2.6991 -7.9106 -3.0144 34 1 3.8176 -2.3610 -0.1596 35 1 2.6964 -3.7213 0.0614 36 1 0.1806 -2.5396 1.0130 37 1 1.1730 -3.7843 1.8094 38 1 0.6793 -2.3297 2.7088 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257085890.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:33 Heat of formation + Delta-G solvation = -71.930234 kcal Electronic energy + Delta-G solvation = -16922.712013 eV Core-core repulsion = 14378.023677 eV Total energy + Delta-G solvation = -2544.688336 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.00346 -38.11526 -34.92227 -34.39817 -33.15629 -30.33122 -29.37745 -27.43158 -26.32087 -24.42682 -23.58335 -22.00157 -19.44666 -18.65648 -17.57249 -16.96249 -16.55366 -16.07567 -15.90046 -15.27360 -15.11515 -14.78332 -14.75644 -13.94203 -13.77087 -13.66152 -13.28799 -13.18372 -13.10491 -12.74276 -12.62969 -12.55253 -12.16548 -12.00252 -11.95450 -11.67213 -11.31869 -11.12849 -10.88851 -10.60893 -10.35754 -9.03720 -8.22175 -6.31988 1.39331 1.40005 1.53618 2.38529 2.67370 3.10279 3.27997 3.73851 3.78910 3.92244 4.04345 4.17123 4.36310 4.38623 4.45573 4.50220 4.59284 4.63246 4.72263 4.82707 4.93647 4.97807 4.98448 5.03348 5.10725 5.13409 5.18281 5.23238 5.31704 5.38173 5.42116 5.64512 6.04977 6.32164 6.62854 6.80627 6.84582 7.37665 8.89104 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.040948 B = 0.006850 C = 0.006296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.626636 B = 4086.491195 C = 4446.214867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.100 3.900 3 H 0.113 0.887 4 C -0.137 4.137 5 C 0.086 3.914 6 H 0.021 0.979 7 N -0.545 5.545 8 C 0.038 3.962 9 C 0.207 3.793 10 C -0.524 4.524 11 H 0.062 0.938 12 C 0.001 3.999 13 N -0.934 5.934 14 Si 0.969 3.031 15 H -0.263 1.263 16 H -0.278 1.278 17 H -0.278 1.278 18 C -0.140 4.140 19 C 0.109 3.891 20 H 0.104 0.896 21 C -0.176 4.176 22 O -0.388 6.388 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.006 0.994 31 H 0.015 0.985 32 H -0.047 1.047 33 H 0.264 0.736 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.061 0.939 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.088 12.925 5.913 14.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.043 3.957 3 H 0.131 0.869 4 C -0.175 4.175 5 C -0.023 4.023 6 H 0.039 0.961 7 N -0.269 5.269 8 C -0.110 4.110 9 C 0.081 3.919 10 C -0.562 4.562 11 H 0.080 0.920 12 C -0.197 4.197 13 N -0.575 5.575 14 Si 0.794 3.206 15 H -0.187 1.187 16 H -0.203 1.203 17 H -0.204 1.204 18 C -0.178 4.178 19 C 0.051 3.949 20 H 0.122 0.878 21 C -0.233 4.233 22 O -0.307 6.307 23 H 0.090 0.910 24 H 0.096 0.904 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.025 0.975 31 H 0.033 0.967 32 H -0.029 1.029 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.578 12.984 6.044 14.552 hybrid contribution -0.680 -1.544 -0.930 1.927 sum -3.258 11.440 5.114 12.947 Atomic orbital electron populations 1.22491 0.95886 1.01837 1.03222 1.21983 0.93418 0.96872 0.83446 0.86915 1.22233 1.02929 0.93281 0.99017 1.21441 0.95004 0.95440 0.90377 0.96148 1.62199 1.55460 1.07319 1.01968 1.22260 0.94870 1.00177 0.93728 1.19418 0.92681 0.83149 0.96701 1.21520 1.31320 0.91769 1.11619 0.91978 1.25915 0.96830 0.97489 0.99456 1.70096 1.44849 1.03907 1.38648 0.85332 0.78243 0.78306 0.78722 1.18750 1.20327 1.20408 1.22176 1.00362 1.00500 0.94787 1.21810 0.97075 0.80202 0.95784 0.87829 1.22470 0.98228 1.00595 1.02022 1.86318 1.83892 1.21427 1.39064 0.91037 0.90400 0.94004 0.89653 0.90885 0.89703 0.92500 0.97531 0.96736 1.02924 0.92707 0.91504 0.92581 0.93422 0.92010 0.90508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.81 9.38 72.01 0.68 -3.14 16 2 C 0.10 2.43 3.43 30.48 0.10 2.53 16 3 H 0.11 2.21 8.28 -1.36 -0.01 2.20 16 4 C -0.14 -3.85 4.37 30.45 0.13 -3.72 16 5 C 0.09 3.13 1.86 44.85 0.08 3.21 16 6 H 0.02 0.80 6.86 -2.52 -0.02 0.79 16 7 N -0.55 -24.03 4.61 -901.41 -4.16 -28.18 16 8 C 0.04 1.47 8.92 127.69 1.14 2.61 16 9 C 0.21 11.22 4.55 85.56 0.39 11.61 16 10 C -0.52 -30.18 8.46 25.60 0.22 -29.96 16 11 H 0.06 3.52 7.12 -2.91 -0.02 3.50 16 12 C 0.00 0.06 5.46 84.65 0.46 0.52 16 13 N -0.93 -56.76 13.29 21.44 0.28 -56.47 16 14 Si 0.97 44.68 29.54 68.60 2.03 46.71 16 15 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 17 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 18 C -0.14 -4.97 4.57 30.44 0.14 -4.84 16 19 C 0.11 3.12 3.43 30.48 0.10 3.23 16 20 H 0.10 2.65 8.28 -1.35 -0.01 2.64 16 21 C -0.18 -4.71 9.38 72.01 0.68 -4.03 16 22 O -0.39 -10.70 9.72 -143.57 -1.39 -12.09 16 23 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.08 1.43 8.04 -2.38 -0.02 1.41 16 25 H 0.04 1.04 5.57 -2.39 -0.01 1.03 16 26 H 0.09 2.17 6.24 -2.27 -0.01 2.15 16 27 H 0.07 2.12 8.16 -2.27 -0.02 2.10 16 28 H 0.08 2.65 6.25 -2.39 -0.01 2.63 16 29 H 0.06 2.39 6.76 -2.38 -0.02 2.38 16 30 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.01 0.85 5.89 -2.39 -0.01 0.83 16 32 H -0.05 -2.81 8.12 -2.39 -0.02 -2.83 16 33 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 34 H 0.07 2.44 8.16 -2.26 -0.02 2.42 16 35 H 0.06 2.27 6.11 -2.26 -0.01 2.26 16 36 H 0.05 1.35 5.60 -2.39 -0.01 1.34 16 37 H 0.06 1.70 8.04 -2.39 -0.02 1.68 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -64.35 288.51 1.92 -62.42 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 1.04 Total: 9.59 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: 4.12 Total: -21.98 kcal Atomic # 7 Polarization: -80.78 SS G_CDS: -3.87 Total: -84.65 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -1.39 Total: -12.09 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -64.35 1.92 -62.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257085890.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.505 kcal (2) G-P(sol) polarization free energy of solvation -64.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds