Wall clock time and date at job start Sun Mar 29 2020 22:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.48490 * 2 1 4 4 C 1.53092 * 109.47979 * 120.02496 * 2 1 3 5 5 C 1.53178 * 109.16414 * 62.38175 * 4 2 1 6 6 N 1.46906 * 109.54376 * 176.85112 * 5 4 2 7 7 C 1.46902 * 110.99573 * 298.95419 * 6 5 4 8 8 C 1.46898 * 110.99888 * 175.00053 * 6 5 4 9 9 C 1.50702 * 109.46796 * 189.99926 * 8 6 5 10 10 H 1.08003 * 119.99822 * 359.97438 * 9 8 6 11 11 C 1.37873 * 119.99809 * 180.02562 * 9 8 6 12 12 N 1.31523 * 120.00246 * 179.97438 * 11 9 8 13 13 Si 1.86802 * 120.00116 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47222 * 90.00275 * 13 11 9 15 15 H 1.48496 * 109.47118 * 210.00206 * 13 11 9 16 16 H 1.48501 * 109.47094 * 329.99916 * 13 11 9 17 17 C 1.53176 * 109.03584 * 56.98551 * 5 4 2 18 18 C 1.53095 * 109.16061 * 303.01516 * 17 5 4 19 19 H 1.08996 * 109.48222 * 297.62774 * 18 17 5 20 20 C 1.53005 * 109.48911 * 177.59597 * 18 17 5 21 21 O 1.42904 * 109.49042 * 239.96676 * 2 1 3 22 22 H 1.08995 * 109.47336 * 299.98184 * 1 2 3 23 23 H 1.09005 * 109.46418 * 59.97623 * 1 2 3 24 24 H 1.08997 * 109.47303 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.51812 * 302.47669 * 4 2 1 26 26 H 1.08999 * 109.57880 * 182.32223 * 4 2 1 27 27 H 1.08999 * 109.54154 * 297.02322 * 5 4 2 28 28 H 1.09004 * 109.47457 * 60.00221 * 7 6 5 29 29 H 1.09001 * 109.46615 * 179.97438 * 7 6 5 30 30 H 1.08990 * 109.47358 * 299.99539 * 7 6 5 31 31 H 1.08999 * 109.46988 * 309.99510 * 8 6 5 32 32 H 1.08996 * 109.46945 * 69.99996 * 8 6 5 33 33 H 0.96996 * 119.99953 * 179.97438 * 12 11 9 34 34 H 1.08995 * 109.52370 * 62.92619 * 17 5 4 35 35 H 1.09004 * 109.52067 * 183.11389 * 17 5 4 36 36 H 1.09002 * 109.46959 * 300.05671 * 20 18 17 37 37 H 1.08999 * 109.46722 * 60.05100 * 20 18 17 38 38 H 1.09000 * 109.47022 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7222 1.2496 5 6 1.5758 -2.1813 1.2122 6 7 2.1240 -2.9015 2.3694 7 6 3.5928 -2.8966 2.3448 8 6 1.6030 -4.2736 2.4306 9 6 1.9857 -4.8978 3.7478 10 1 2.5589 -4.3319 4.4672 11 6 1.6048 -6.1916 4.0339 12 7 1.9391 -6.7367 5.1832 13 14 0.6139 -7.1706 2.7892 14 1 1.5381 -7.9056 1.8887 15 1 -0.2574 -8.1391 3.5017 16 1 -0.2266 -6.2452 1.9876 17 6 2.0768 -2.8322 -0.0807 18 6 1.5649 -2.0286 -1.2790 19 1 0.4754 -2.0553 -1.2958 20 6 2.1103 -2.6373 -2.5724 21 8 2.0068 -0.6743 -1.1663 22 1 -0.3634 0.5135 0.8901 23 1 -0.3632 0.5142 -0.8898 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6419 -0.2356 2.1398 26 1 3.1297 -0.6872 1.2723 27 1 0.4869 -2.2181 1.2424 28 1 3.9533 -1.8682 2.3704 29 1 3.9725 -3.4359 3.2126 30 1 3.9426 -3.3816 1.4336 31 1 0.5170 -4.2542 2.3395 32 1 2.0258 -4.8594 1.6144 33 1 1.6709 -7.6468 5.3846 34 1 3.1668 -2.8399 -0.0860 35 1 1.7042 -3.8547 -0.1419 36 1 3.1999 -2.6109 -2.5552 37 1 1.7732 -3.6703 -2.6581 38 1 1.7460 -2.0646 -3.4253 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257085919.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:35 Heat of formation + Delta-G solvation = -48.249425 kcal Electronic energy + Delta-G solvation = -16969.410891 eV Core-core repulsion = 14425.749432 eV Total energy + Delta-G solvation = -2543.661459 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.02661 -36.70835 -33.32809 -32.78886 -31.52612 -29.03005 -27.62664 -26.50088 -25.20836 -22.82951 -21.71435 -20.12504 -18.75720 -16.93976 -16.21239 -15.86297 -15.21693 -14.78115 -14.32030 -13.97684 -13.48231 -13.32827 -13.08152 -12.59398 -12.55049 -12.33907 -12.05192 -11.91242 -11.68304 -11.38312 -11.12012 -10.93275 -10.77306 -10.70364 -10.50304 -10.25979 -9.87807 -9.69209 -9.30315 -9.28121 -8.58258 -7.32406 -6.06110 -4.03156 3.26155 3.34068 3.35487 3.83048 4.40541 4.69594 4.86116 4.89889 5.04621 5.19407 5.24669 5.27501 5.39449 5.46713 5.53366 5.62845 5.67529 5.80619 5.85520 5.96466 6.07691 6.11388 6.14076 6.17810 6.24961 6.31888 6.39237 6.59257 6.71901 6.87619 7.00722 7.37847 7.59800 7.91289 8.05960 8.65846 9.02685 9.55737 11.07125 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033637 B = 0.007618 C = 0.007022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.224731 B = 3674.852014 C = 3986.609241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.089 3.911 3 H 0.099 0.901 4 C -0.141 4.141 5 C 0.081 3.919 6 N -0.523 5.523 7 C 0.030 3.970 8 C 0.162 3.838 9 C -0.509 4.509 10 H 0.081 0.919 11 C 0.068 3.932 12 N -0.901 5.901 13 Si 0.874 3.126 14 H -0.278 1.278 15 H -0.285 1.285 16 H -0.267 1.267 17 C -0.185 4.185 18 C 0.087 3.913 19 H 0.058 0.942 20 C -0.143 4.143 21 O -0.379 6.379 22 H 0.067 0.933 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.016 0.984 31 H 0.026 0.974 32 H -0.015 1.015 33 H 0.263 0.737 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.403 10.832 -13.002 16.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.031 3.969 3 H 0.117 0.883 4 C -0.179 4.179 5 C -0.028 4.028 6 N -0.245 5.245 7 C -0.118 4.118 8 C 0.036 3.964 9 C -0.547 4.547 10 H 0.099 0.901 11 C -0.134 4.134 12 N -0.540 5.540 13 Si 0.702 3.298 14 H -0.204 1.204 15 H -0.211 1.211 16 H -0.192 1.192 17 C -0.224 4.224 18 C 0.029 3.971 19 H 0.076 0.924 20 C -0.200 4.200 21 O -0.298 6.298 22 H 0.086 0.914 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.034 0.966 31 H 0.044 0.956 32 H 0.003 0.997 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.457 10.977 -12.572 16.753 hybrid contribution -0.460 -1.308 -1.041 1.734 sum -1.917 9.669 -13.613 16.807 Atomic orbital electron populations 1.22458 0.96653 1.02889 1.02339 1.22157 0.93355 0.96080 0.85295 0.88334 1.22274 1.01909 0.95857 0.97878 1.21795 0.99352 0.93154 0.88541 1.62194 1.06978 1.18191 1.37121 1.22333 0.88657 0.99891 1.00930 1.20174 0.95109 0.84174 0.96987 1.21057 1.34928 0.97946 1.00767 0.90139 1.24901 0.95790 0.97464 0.95202 1.69896 1.46792 1.14793 1.22500 0.86875 0.80766 0.80322 0.81867 1.20362 1.21121 1.19226 1.22955 1.02656 1.00439 0.96355 1.22029 0.97826 0.82151 0.95067 0.92410 1.21759 1.01982 1.00236 0.96061 1.87919 1.73957 1.24634 1.43303 0.91365 0.92288 0.91783 0.90314 0.90977 0.90535 0.93132 0.90323 0.96586 0.95648 0.99694 0.92675 0.90716 0.90955 0.91985 0.91299 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.10 8.65 37.16 0.32 -1.78 16 2 C 0.09 1.12 3.91 -26.68 -0.10 1.01 16 3 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.14 -2.03 4.80 -26.59 -0.13 -2.16 16 5 C 0.08 1.38 2.00 -67.53 -0.14 1.25 16 6 N -0.52 -10.96 4.74 -236.11 -1.12 -12.08 16 7 C 0.03 0.59 8.64 60.07 0.52 1.10 16 8 C 0.16 3.93 3.25 -4.98 -0.02 3.92 16 9 C -0.51 -14.53 9.01 -34.44 -0.31 -14.84 16 10 H 0.08 2.50 7.37 -52.48 -0.39 2.11 16 11 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 12 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 13 Si 0.87 21.56 27.47 -169.99 -4.67 16.90 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 17 C -0.18 -2.94 4.01 -26.59 -0.11 -3.05 16 18 C 0.09 1.19 2.94 -26.68 -0.08 1.11 16 19 H 0.06 0.76 6.34 -51.93 -0.33 0.43 16 20 C -0.14 -1.68 9.57 37.16 0.36 -1.32 16 21 O -0.38 -5.36 10.24 -35.23 -0.36 -5.72 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.78 4.98 -51.93 -0.26 0.53 16 25 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.07 1.06 6.28 -51.93 -0.33 0.74 16 27 H 0.08 1.33 6.51 -51.93 -0.34 0.99 16 28 H 0.05 0.85 6.27 -51.93 -0.33 0.53 16 29 H 0.08 1.70 6.76 -51.93 -0.35 1.35 16 30 H 0.02 0.30 6.21 -51.93 -0.32 -0.02 16 31 H 0.03 0.63 7.06 -51.93 -0.37 0.26 16 32 H -0.01 -0.35 6.45 -51.93 -0.34 -0.69 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.07 1.23 6.23 -51.93 -0.32 0.91 16 35 H 0.07 1.23 6.94 -51.93 -0.36 0.87 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 282.12 15.07 4.25 4.25 Total: -1.00 -30.38 282.12 -7.05 -37.44 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -6.15 Total: -0.99 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 0.22 Total: -12.88 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: -0.35 Total: -39.00 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.36 Total: -5.72 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.38 -7.05 -37.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257085919.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.812 kcal (2) G-P(sol) polarization free energy of solvation -30.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds