Wall clock time and date at job start Sun Mar 29 2020 22:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.48490 * 2 1 4 4 C 1.53092 * 109.47979 * 120.02496 * 2 1 3 5 5 C 1.53178 * 109.16414 * 62.38175 * 4 2 1 6 6 N 1.46906 * 109.54376 * 176.85112 * 5 4 2 7 7 C 1.46902 * 110.99573 * 298.95419 * 6 5 4 8 8 C 1.46898 * 110.99888 * 175.00053 * 6 5 4 9 9 C 1.50702 * 109.46796 * 189.99926 * 8 6 5 10 10 H 1.08003 * 119.99822 * 359.97438 * 9 8 6 11 11 C 1.37873 * 119.99809 * 180.02562 * 9 8 6 12 12 N 1.31523 * 120.00246 * 179.97438 * 11 9 8 13 13 Si 1.86802 * 120.00116 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47222 * 90.00275 * 13 11 9 15 15 H 1.48496 * 109.47118 * 210.00206 * 13 11 9 16 16 H 1.48501 * 109.47094 * 329.99916 * 13 11 9 17 17 C 1.53176 * 109.03584 * 56.98551 * 5 4 2 18 18 C 1.53095 * 109.16061 * 303.01516 * 17 5 4 19 19 H 1.08996 * 109.48222 * 297.62774 * 18 17 5 20 20 C 1.53005 * 109.48911 * 177.59597 * 18 17 5 21 21 O 1.42904 * 109.49042 * 239.96676 * 2 1 3 22 22 H 1.08995 * 109.47336 * 299.98184 * 1 2 3 23 23 H 1.09005 * 109.46418 * 59.97623 * 1 2 3 24 24 H 1.08997 * 109.47303 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.51812 * 302.47669 * 4 2 1 26 26 H 1.08999 * 109.57880 * 182.32223 * 4 2 1 27 27 H 1.08999 * 109.54154 * 297.02322 * 5 4 2 28 28 H 1.09004 * 109.47457 * 60.00221 * 7 6 5 29 29 H 1.09001 * 109.46615 * 179.97438 * 7 6 5 30 30 H 1.08990 * 109.47358 * 299.99539 * 7 6 5 31 31 H 1.08999 * 109.46988 * 309.99510 * 8 6 5 32 32 H 1.08996 * 109.46945 * 69.99996 * 8 6 5 33 33 H 0.96996 * 119.99953 * 179.97438 * 12 11 9 34 34 H 1.08995 * 109.52370 * 62.92619 * 17 5 4 35 35 H 1.09004 * 109.52067 * 183.11389 * 17 5 4 36 36 H 1.09002 * 109.46959 * 300.05671 * 20 18 17 37 37 H 1.08999 * 109.46722 * 60.05100 * 20 18 17 38 38 H 1.09000 * 109.47022 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7222 1.2496 5 6 1.5758 -2.1813 1.2122 6 7 2.1240 -2.9015 2.3694 7 6 3.5928 -2.8966 2.3448 8 6 1.6030 -4.2736 2.4306 9 6 1.9857 -4.8978 3.7478 10 1 2.5589 -4.3319 4.4672 11 6 1.6048 -6.1916 4.0339 12 7 1.9391 -6.7367 5.1832 13 14 0.6139 -7.1706 2.7892 14 1 1.5381 -7.9056 1.8887 15 1 -0.2574 -8.1391 3.5017 16 1 -0.2266 -6.2452 1.9876 17 6 2.0768 -2.8322 -0.0807 18 6 1.5649 -2.0286 -1.2790 19 1 0.4754 -2.0553 -1.2958 20 6 2.1103 -2.6373 -2.5724 21 8 2.0068 -0.6743 -1.1663 22 1 -0.3634 0.5135 0.8901 23 1 -0.3632 0.5142 -0.8898 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6419 -0.2356 2.1398 26 1 3.1297 -0.6872 1.2723 27 1 0.4869 -2.2181 1.2424 28 1 3.9533 -1.8682 2.3704 29 1 3.9725 -3.4359 3.2126 30 1 3.9426 -3.3816 1.4336 31 1 0.5170 -4.2542 2.3395 32 1 2.0258 -4.8594 1.6144 33 1 1.6709 -7.6468 5.3846 34 1 3.1668 -2.8399 -0.0860 35 1 1.7042 -3.8547 -0.1419 36 1 3.1999 -2.6109 -2.5552 37 1 1.7732 -3.6703 -2.6581 38 1 1.7460 -2.0646 -3.4253 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257085919.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:35 Heat of formation + Delta-G solvation = -69.416155 kcal Electronic energy + Delta-G solvation = -16970.328749 eV Core-core repulsion = 14425.749432 eV Total energy + Delta-G solvation = -2544.579317 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.21237 -38.19498 -34.86714 -34.30704 -32.99123 -30.41400 -29.23303 -27.66254 -26.82382 -24.21980 -23.07600 -21.63294 -19.98467 -19.04136 -17.29165 -17.09105 -16.74651 -16.34305 -15.92407 -15.17097 -15.09568 -14.66359 -14.54971 -14.31619 -13.87721 -13.48829 -13.22071 -13.08440 -12.90339 -12.76543 -12.71682 -12.47201 -12.25280 -12.10582 -11.83859 -11.75088 -11.65703 -11.43373 -10.93513 -10.78864 -10.42358 -8.97197 -8.30294 -6.33612 1.31550 1.33534 1.44297 2.32051 2.82590 3.02271 3.21442 3.73624 3.77881 3.94800 4.12721 4.17954 4.29918 4.40175 4.44239 4.52575 4.52839 4.60411 4.66865 4.76443 4.82617 4.90546 4.98460 5.02233 5.04244 5.06790 5.17017 5.23295 5.26324 5.30699 5.42046 5.52727 5.98395 6.34361 6.35435 6.65026 6.72868 7.30015 8.86433 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033637 B = 0.007618 C = 0.007022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.224731 B = 3674.852014 C = 3986.609241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.090 3.910 3 H 0.121 0.879 4 C -0.135 4.135 5 C 0.079 3.921 6 N -0.540 5.540 7 C 0.037 3.963 8 C 0.175 3.825 9 C -0.518 4.518 10 H 0.037 0.963 11 C 0.008 3.992 12 N -0.948 5.948 13 Si 0.945 3.055 14 H -0.267 1.267 15 H -0.280 1.280 16 H -0.249 1.249 17 C -0.180 4.180 18 C 0.090 3.910 19 H 0.066 0.934 20 C -0.141 4.141 21 O -0.387 6.387 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.052 0.948 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.022 0.978 31 H 0.025 0.975 32 H -0.012 1.012 33 H 0.267 0.733 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.440 11.722 -15.455 19.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.032 3.968 3 H 0.139 0.861 4 C -0.173 4.173 5 C -0.030 4.030 6 N -0.262 5.262 7 C -0.111 4.111 8 C 0.048 3.952 9 C -0.556 4.556 10 H 0.056 0.944 11 C -0.190 4.190 12 N -0.589 5.589 13 Si 0.769 3.231 14 H -0.193 1.193 15 H -0.205 1.205 16 H -0.173 1.173 17 C -0.219 4.219 18 C 0.032 3.968 19 H 0.084 0.916 20 C -0.198 4.198 21 O -0.306 6.306 22 H 0.096 0.904 23 H 0.090 0.910 24 H 0.071 0.929 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.006 0.994 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.488 11.896 -15.040 19.337 hybrid contribution -0.079 -1.500 -0.196 1.515 sum -2.567 10.396 -15.236 18.623 Atomic orbital electron populations 1.22431 0.95575 1.02497 1.03523 1.22289 0.94232 0.96581 0.83707 0.86132 1.22245 1.01662 0.94118 0.99318 1.21895 0.99158 0.94349 0.87594 1.62087 1.07713 1.16448 1.39991 1.22243 0.88017 1.01150 0.99668 1.19883 0.94926 0.85969 0.94429 1.21301 1.34295 0.98142 1.01889 0.94440 1.25848 0.97045 0.98702 0.97357 1.70051 1.48461 1.15474 1.24879 0.85739 0.79351 0.78796 0.79240 1.19257 1.20537 1.17254 1.22886 1.02039 1.00097 0.96890 1.22055 0.98273 0.81781 0.94734 0.91636 1.21765 1.01732 1.00843 0.95492 1.87925 1.74297 1.24662 1.43749 0.90391 0.90966 0.92910 0.90070 0.91362 0.90703 0.90465 0.93576 0.95929 0.95707 0.99438 0.92408 0.91503 0.92173 0.92357 0.90473 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.58 8.65 71.98 0.62 -2.96 16 2 C 0.09 1.98 3.91 30.62 0.12 2.10 16 3 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 4 C -0.14 -3.62 4.80 30.68 0.15 -3.47 16 5 C 0.08 2.57 2.00 45.03 0.09 2.66 16 6 N -0.54 -22.54 4.74 -900.91 -4.27 -26.81 16 7 C 0.04 1.46 8.64 127.69 1.10 2.56 16 8 C 0.18 8.48 3.25 85.56 0.28 8.76 16 9 C -0.52 -30.41 9.01 25.60 0.23 -30.18 16 10 H 0.04 2.46 7.37 -2.91 -0.02 2.43 16 11 C 0.01 0.45 5.47 84.65 0.46 0.92 16 12 N -0.95 -59.82 13.96 21.45 0.30 -59.52 16 13 Si 0.95 44.27 27.47 68.60 1.88 46.16 16 14 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 15 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 16 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 17 C -0.18 -5.43 4.01 30.68 0.12 -5.30 16 18 C 0.09 2.22 2.94 30.63 0.09 2.31 16 19 H 0.07 1.54 6.34 -2.39 -0.02 1.53 16 20 C -0.14 -2.93 9.57 71.98 0.69 -2.24 16 21 O -0.39 -9.81 10.24 -148.98 -1.52 -11.34 16 22 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 24 H 0.05 1.15 4.98 -2.39 -0.01 1.14 16 25 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.07 1.87 6.28 -2.39 -0.01 1.85 16 27 H 0.07 2.48 6.51 -2.39 -0.02 2.46 16 28 H 0.08 2.56 6.27 -2.38 -0.01 2.54 16 29 H 0.05 2.07 6.76 -2.39 -0.02 2.06 16 30 H 0.02 0.84 6.21 -2.39 -0.01 0.82 16 31 H 0.02 1.21 7.06 -2.39 -0.02 1.19 16 32 H -0.01 -0.57 6.45 -2.39 -0.02 -0.59 16 33 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 34 H 0.07 2.11 6.23 -2.39 -0.01 2.09 16 35 H 0.06 1.95 6.94 -2.38 -0.02 1.93 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -66.08 282.12 1.31 -64.77 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.97 Total: 11.59 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: 3.96 Total: -24.85 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -3.97 Total: -86.33 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: -1.52 Total: -11.34 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.16 kcal Total: -66.08 1.31 -64.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257085919.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.645 kcal (2) G-P(sol) polarization free energy of solvation -66.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds