Wall clock time and date at job start Sun Mar 29 2020 21:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47147 * 2 1 4 4 H 1.09007 * 109.47063 * 55.00227 * 3 2 1 5 5 C 1.52999 * 109.47264 * 174.99723 * 3 2 1 6 6 O 1.42905 * 109.46728 * 55.00612 * 5 3 2 7 7 N 1.46901 * 109.47190 * 295.00326 * 3 2 1 8 8 C 1.46842 * 110.99998 * 299.20482 * 7 3 2 9 9 C 1.53040 * 109.52258 * 174.15987 * 8 7 3 10 10 C 1.53115 * 109.27591 * 59.18400 * 9 8 7 11 11 C 1.50699 * 109.52320 * 182.43794 * 10 9 8 12 12 H 1.07999 * 119.99798 * 119.68145 * 11 10 9 13 13 C 1.37877 * 120.00181 * 299.68203 * 11 10 9 14 14 N 1.31517 * 119.99795 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00190 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46839 * 60.00358 * 15 13 11 17 17 H 1.48501 * 109.47085 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47534 * 300.00655 * 15 13 11 19 19 C 1.53123 * 109.15975 * 302.34237 * 10 9 8 20 20 C 1.46847 * 110.99692 * 174.99801 * 7 3 2 21 21 H 1.08993 * 109.47326 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47363 * 299.99493 * 1 2 3 23 23 H 1.09001 * 109.47578 * 59.99445 * 1 2 3 24 24 H 1.09001 * 109.47363 * 240.00507 * 2 1 3 25 25 H 1.09003 * 109.47317 * 120.00082 * 2 1 3 26 26 H 1.09000 * 109.47486 * 295.00551 * 5 3 2 27 27 H 1.09001 * 109.47362 * 174.99828 * 5 3 2 28 28 H 0.96696 * 114.00036 * 179.97438 * 6 5 3 29 29 H 1.09000 * 109.46645 * 294.18084 * 8 7 3 30 30 H 1.08999 * 109.45915 * 54.14618 * 8 7 3 31 31 H 1.08999 * 109.50346 * 299.23884 * 9 8 7 32 32 H 1.09003 * 109.49969 * 179.11812 * 9 8 7 33 33 H 1.09000 * 109.52703 * 62.24613 * 10 9 8 34 34 H 0.96994 * 119.99945 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.50521 * 297.71168 * 19 10 9 36 36 H 1.09002 * 109.50027 * 177.59758 * 19 10 9 37 37 H 1.09002 * 109.46488 * 305.85562 * 20 7 3 38 38 H 1.09001 * 109.46347 * 65.82376 * 20 7 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5648 1.4444 0.1258 6 8 4.1293 0.6405 -0.9122 7 7 1.6513 2.0994 -1.2552 8 6 2.2354 1.4100 -2.4127 9 6 1.6946 2.0295 -3.7034 10 6 2.0524 3.5178 -3.7382 11 6 1.4709 4.1466 -4.9782 12 1 0.7594 4.9544 -4.8912 13 6 1.8474 3.6907 -6.2238 14 7 2.7142 2.7073 -6.3298 15 14 1.1261 4.4696 -7.7608 16 1 1.4668 5.9147 -7.7898 17 1 1.6880 3.8039 -8.9634 18 1 -0.3501 4.3092 -7.7511 19 6 1.4733 4.2031 -2.4974 20 6 2.0206 3.5206 -1.2417 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8499 1.0377 1.0961 27 1 3.9355 2.4656 0.0366 28 1 5.0950 0.5964 -0.8942 29 1 3.3203 1.5128 -2.3872 30 1 1.9700 0.3534 -2.3780 31 1 0.6112 1.9147 -3.7360 32 1 2.1404 1.5279 -4.5623 33 1 3.1364 3.6319 -3.7449 34 1 2.9788 2.3863 -7.2060 35 1 0.3864 4.1226 -2.5110 36 1 1.7609 5.2545 -2.4948 37 1 1.5991 3.9969 -0.3565 38 1 3.1064 3.6135 -1.2217 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333301425.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:04 Heat of formation + Delta-G solvation = -58.169317 kcal Electronic energy + Delta-G solvation = -17091.643524 eV Core-core repulsion = 14547.551906 eV Total energy + Delta-G solvation = -2544.091618 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.16745 -36.20570 -34.45972 -32.55450 -30.49793 -29.66586 -27.91870 -25.23504 -23.37203 -22.09947 -21.66327 -19.57116 -18.32428 -17.26992 -16.29591 -15.55958 -14.86416 -14.43613 -14.20002 -13.93791 -13.29765 -12.83056 -12.57070 -12.32209 -12.16822 -11.99302 -11.81993 -11.31648 -11.01499 -10.81462 -10.75401 -10.59316 -10.41751 -10.30180 -10.19397 -9.84731 -9.46188 -9.24585 -8.83141 -8.54583 -8.19039 -7.42474 -5.88185 -3.93539 3.37620 3.41888 3.44869 4.35096 4.51634 4.69158 5.06143 5.22604 5.41536 5.45166 5.49180 5.62795 5.80673 5.86931 5.95448 6.05978 6.16472 6.23880 6.30783 6.48688 6.55251 6.68890 6.69755 6.81093 6.90326 7.07616 7.21193 7.34442 7.61705 7.77301 7.77876 7.89875 7.99001 8.18415 8.31369 8.59046 9.10124 9.70049 11.17598 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.039201 B = 0.007162 C = 0.007069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.099406 B = 3908.847419 C = 3960.213367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C 0.083 3.917 4 H 0.083 0.917 5 C 0.042 3.958 6 O -0.552 6.552 7 N -0.524 5.524 8 C 0.054 3.946 9 C -0.106 4.106 10 C 0.050 3.950 11 C -0.511 4.511 12 H 0.052 0.948 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.888 3.112 16 H -0.279 1.279 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.105 4.105 20 C 0.058 3.942 21 H 0.042 0.958 22 H 0.044 0.956 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.038 0.962 27 H 0.044 0.956 28 H 0.366 0.634 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.089 0.911 33 H 0.018 0.982 34 H 0.259 0.741 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.052 0.948 38 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.042 -3.843 12.768 13.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C -0.026 4.026 4 H 0.101 0.899 5 C -0.038 4.038 6 O -0.357 6.357 7 N -0.248 5.248 8 C -0.073 4.073 9 C -0.144 4.144 10 C 0.032 3.968 11 C -0.549 4.549 12 H 0.070 0.930 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.717 3.283 16 H -0.205 1.205 17 H -0.214 1.214 18 H -0.204 1.204 19 C -0.143 4.143 20 C -0.069 4.069 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.212 0.788 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.107 0.893 33 H 0.036 0.964 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -0.019 -4.052 12.419 13.063 hybrid contribution 1.155 0.584 -0.537 1.401 sum 1.136 -3.468 11.882 12.430 Atomic orbital electron populations 1.21666 0.95577 1.00380 1.02465 1.21482 0.96194 0.95277 1.01871 1.21912 0.90155 0.96237 0.94315 0.89923 1.23004 0.96811 0.94134 0.89825 1.86804 1.24492 1.72307 1.52048 1.62166 1.59070 1.02028 1.01509 1.22504 0.98080 0.96562 0.90109 1.21686 0.98987 0.98822 0.94909 1.18653 0.95492 0.91801 0.90903 1.21203 1.25197 1.17685 0.90846 0.92965 1.24963 0.95108 0.95104 0.98831 1.69885 1.32721 1.26856 1.23543 0.86724 0.79447 0.79413 0.82763 1.20454 1.21406 1.20371 1.21662 1.00360 0.97666 0.94618 1.22123 0.97226 0.88624 0.98974 0.93893 0.93696 0.91106 0.90662 0.92964 0.94397 0.93763 0.78784 0.92732 0.92709 0.94502 0.89311 0.96359 0.93157 0.92651 0.93520 0.92958 0.95936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.80 37.15 0.36 -1.58 16 2 C -0.11 -1.55 4.95 -26.73 -0.13 -1.68 16 3 C 0.08 1.23 2.33 -67.71 -0.16 1.07 16 4 H 0.08 1.12 8.08 -51.93 -0.42 0.70 16 5 C 0.04 0.56 6.36 37.16 0.24 0.80 16 6 O -0.55 -7.97 9.36 -35.23 -0.33 -8.30 16 7 N -0.52 -9.54 4.10 -226.69 -0.93 -10.47 16 8 C 0.05 1.12 4.06 -3.84 -0.02 1.10 16 9 C -0.11 -2.62 5.12 -26.65 -0.14 -2.75 16 10 C 0.05 1.29 2.16 -91.65 -0.20 1.09 16 11 C -0.51 -14.47 8.56 -34.44 -0.29 -14.76 16 12 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 13 C 0.06 1.72 5.31 -17.82 -0.09 1.63 16 14 N -0.89 -26.04 11.37 55.43 0.63 -25.41 16 15 Si 0.89 21.80 29.54 -169.99 -5.02 16.77 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 C -0.11 -2.29 5.32 -26.65 -0.14 -2.43 16 20 C 0.06 1.08 5.03 -3.83 -0.02 1.06 16 21 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.07 1.12 7.75 -51.93 -0.40 0.72 16 24 H 0.07 1.20 5.65 -51.93 -0.29 0.91 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.04 0.61 6.42 -51.93 -0.33 0.28 16 28 H 0.37 3.77 9.12 45.56 0.42 4.18 16 29 H 0.05 1.18 5.56 -51.93 -0.29 0.89 16 30 H 0.05 1.12 5.93 -51.93 -0.31 0.81 16 31 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.09 2.45 6.18 -51.93 -0.32 2.13 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 38 H 0.02 0.42 6.62 -51.93 -0.34 0.08 16 LS Contribution 285.26 15.07 4.30 4.30 Total: -1.00 -29.82 285.26 -7.58 -37.40 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.64 Total: 2.16 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -0.59 Total: -16.46 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: -0.30 Total: -35.87 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -0.33 Total: -8.30 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.82 -7.58 -37.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333301425.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.773 kcal (2) G-P(sol) polarization free energy of solvation -29.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds