Wall clock time and date at job start Sun Mar 29 2020 21:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47147 * 2 1 4 4 H 1.09007 * 109.47063 * 55.00227 * 3 2 1 5 5 C 1.52999 * 109.47264 * 174.99723 * 3 2 1 6 6 O 1.42905 * 109.46728 * 55.00612 * 5 3 2 7 7 N 1.46901 * 109.47190 * 295.00326 * 3 2 1 8 8 C 1.46842 * 110.99998 * 299.20482 * 7 3 2 9 9 C 1.53040 * 109.52258 * 174.15987 * 8 7 3 10 10 C 1.53115 * 109.27591 * 59.18400 * 9 8 7 11 11 C 1.50699 * 109.52320 * 182.43794 * 10 9 8 12 12 H 1.07999 * 119.99798 * 119.68145 * 11 10 9 13 13 C 1.37877 * 120.00181 * 299.68203 * 11 10 9 14 14 N 1.31517 * 119.99795 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00190 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46839 * 60.00358 * 15 13 11 17 17 H 1.48501 * 109.47085 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47534 * 300.00655 * 15 13 11 19 19 C 1.53123 * 109.15975 * 302.34237 * 10 9 8 20 20 C 1.46847 * 110.99692 * 174.99801 * 7 3 2 21 21 H 1.08993 * 109.47326 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47363 * 299.99493 * 1 2 3 23 23 H 1.09001 * 109.47578 * 59.99445 * 1 2 3 24 24 H 1.09001 * 109.47363 * 240.00507 * 2 1 3 25 25 H 1.09003 * 109.47317 * 120.00082 * 2 1 3 26 26 H 1.09000 * 109.47486 * 295.00551 * 5 3 2 27 27 H 1.09001 * 109.47362 * 174.99828 * 5 3 2 28 28 H 0.96696 * 114.00036 * 179.97438 * 6 5 3 29 29 H 1.09000 * 109.46645 * 294.18084 * 8 7 3 30 30 H 1.08999 * 109.45915 * 54.14618 * 8 7 3 31 31 H 1.08999 * 109.50346 * 299.23884 * 9 8 7 32 32 H 1.09003 * 109.49969 * 179.11812 * 9 8 7 33 33 H 1.09000 * 109.52703 * 62.24613 * 10 9 8 34 34 H 0.96994 * 119.99945 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.50521 * 297.71168 * 19 10 9 36 36 H 1.09002 * 109.50027 * 177.59758 * 19 10 9 37 37 H 1.09002 * 109.46488 * 305.85562 * 20 7 3 38 38 H 1.09001 * 109.46347 * 65.82376 * 20 7 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5648 1.4444 0.1258 6 8 4.1293 0.6405 -0.9122 7 7 1.6513 2.0994 -1.2552 8 6 2.2354 1.4100 -2.4127 9 6 1.6946 2.0295 -3.7034 10 6 2.0524 3.5178 -3.7382 11 6 1.4709 4.1466 -4.9782 12 1 0.7594 4.9544 -4.8912 13 6 1.8474 3.6907 -6.2238 14 7 2.7142 2.7073 -6.3298 15 14 1.1261 4.4696 -7.7608 16 1 1.4668 5.9147 -7.7898 17 1 1.6880 3.8039 -8.9634 18 1 -0.3501 4.3092 -7.7511 19 6 1.4733 4.2031 -2.4974 20 6 2.0206 3.5206 -1.2417 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8499 1.0377 1.0961 27 1 3.9355 2.4656 0.0366 28 1 5.0950 0.5964 -0.8942 29 1 3.3203 1.5128 -2.3872 30 1 1.9700 0.3534 -2.3780 31 1 0.6112 1.9147 -3.7360 32 1 2.1404 1.5279 -4.5623 33 1 3.1364 3.6319 -3.7449 34 1 2.9788 2.3863 -7.2060 35 1 0.3864 4.1226 -2.5110 36 1 1.7609 5.2545 -2.4948 37 1 1.5991 3.9969 -0.3565 38 1 3.1064 3.6135 -1.2217 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333301425.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:04 Heat of formation + Delta-G solvation = -78.902160 kcal Electronic energy + Delta-G solvation = -17092.542568 eV Core-core repulsion = 14547.551906 eV Total energy + Delta-G solvation = -2544.990661 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.56483 -37.64303 -35.89289 -34.32930 -32.15668 -31.38629 -29.25898 -27.13224 -24.61799 -23.82465 -23.25941 -21.02361 -19.99171 -18.42793 -18.36288 -16.98315 -16.49162 -16.05947 -15.52730 -15.28044 -14.79617 -14.62145 -14.29469 -13.76243 -13.72181 -13.34378 -13.12940 -12.95295 -12.78528 -12.50530 -12.36233 -12.16339 -12.02787 -11.83655 -11.59534 -11.52338 -11.22296 -10.80083 -10.61308 -10.53507 -10.31914 -8.86811 -8.05558 -6.19664 1.40437 1.42484 1.49931 2.44429 3.10785 3.20355 3.56561 3.95329 4.12824 4.25364 4.37732 4.43385 4.53933 4.56342 4.62466 4.73906 4.81730 4.88398 4.94146 4.99042 5.06504 5.15988 5.20442 5.28746 5.32228 5.42988 5.50823 5.61548 5.62156 5.70995 6.05179 6.10627 6.43037 6.45765 6.51890 6.91333 6.92786 7.47652 8.98397 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.039201 B = 0.007162 C = 0.007069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.099406 B = 3908.847419 C = 3960.213367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C 0.078 3.922 4 H 0.106 0.894 5 C 0.043 3.957 6 O -0.576 6.576 7 N -0.530 5.530 8 C 0.074 3.926 9 C -0.097 4.097 10 C 0.048 3.952 11 C -0.537 4.537 12 H 0.050 0.950 13 C 0.011 3.989 14 N -0.917 5.917 15 Si 0.953 3.047 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.273 1.273 19 C -0.099 4.099 20 C 0.065 3.935 21 H 0.053 0.947 22 H 0.061 0.939 23 H 0.041 0.959 24 H 0.050 0.950 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.040 0.960 28 H 0.383 0.617 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.019 0.981 32 H 0.054 0.946 33 H -0.015 1.015 34 H 0.259 0.741 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.086 0.914 38 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.755 -3.688 14.550 15.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 C -0.031 4.031 4 H 0.124 0.876 5 C -0.036 4.036 6 O -0.384 6.384 7 N -0.255 5.255 8 C -0.053 4.053 9 C -0.135 4.135 10 C 0.030 3.970 11 C -0.575 4.575 12 H 0.068 0.932 13 C -0.188 4.188 14 N -0.556 5.556 15 Si 0.779 3.221 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.198 1.198 19 C -0.137 4.137 20 C -0.062 4.062 21 H 0.072 0.928 22 H 0.080 0.920 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.232 0.768 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.004 0.996 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.104 0.896 38 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -0.297 -3.894 14.221 14.748 hybrid contribution 1.260 0.514 -1.067 1.730 sum 0.964 -3.379 13.154 13.615 Atomic orbital electron populations 1.21621 0.95352 1.00968 1.01779 1.21450 0.96332 0.94755 1.01877 1.22110 0.91621 0.96546 0.92794 0.87603 1.22984 0.95570 0.94078 0.90952 1.86726 1.26250 1.72452 1.52927 1.62066 1.59245 1.01927 1.02234 1.22136 0.97346 0.96415 0.89397 1.21470 0.97490 0.98384 0.96187 1.18605 0.93419 0.92712 0.92276 1.21607 1.25495 1.18009 0.92395 0.93219 1.25766 0.95457 0.95564 1.01965 1.70036 1.33621 1.27813 1.24173 0.85694 0.78764 0.78781 0.78901 1.19570 1.20861 1.19809 1.21534 0.99667 0.97964 0.94553 1.22042 0.97172 0.88738 0.98289 0.92790 0.92040 0.94001 0.93094 0.90411 0.91248 0.94176 0.76787 0.93475 0.92569 0.96225 0.92793 0.99645 0.93171 0.93373 0.93055 0.89597 0.96037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.80 71.98 0.71 -2.78 16 2 C -0.11 -2.71 4.95 30.59 0.15 -2.56 16 3 C 0.08 2.07 2.33 44.92 0.10 2.18 16 4 H 0.11 2.39 8.08 -2.38 -0.02 2.37 16 5 C 0.04 1.03 6.36 71.98 0.46 1.49 16 6 O -0.58 -15.73 9.36 -148.98 -1.39 -17.12 16 7 N -0.53 -18.63 4.10 -871.10 -3.57 -22.20 16 8 C 0.07 3.11 4.06 86.33 0.35 3.46 16 9 C -0.10 -4.98 5.12 30.65 0.16 -4.82 16 10 C 0.05 2.57 2.16 -11.46 -0.02 2.54 16 11 C -0.54 -31.16 8.56 25.60 0.22 -30.94 16 12 H 0.05 2.83 7.74 -2.91 -0.02 2.80 16 13 C 0.01 0.62 5.31 84.65 0.45 1.07 16 14 N -0.92 -55.17 11.37 21.45 0.24 -54.93 16 15 Si 0.95 45.23 29.54 68.60 2.03 47.26 16 16 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 18 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 19 C -0.10 -4.31 5.32 30.65 0.16 -4.15 16 20 C 0.07 2.30 5.03 86.33 0.43 2.74 16 21 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 22 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.04 1.28 7.75 -2.39 -0.02 1.26 16 24 H 0.05 1.56 5.65 -2.39 -0.01 1.54 16 25 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.04 0.99 6.42 -2.39 -0.02 0.98 16 28 H 0.38 7.30 9.12 -74.06 -0.68 6.63 16 29 H 0.05 2.06 5.56 -2.39 -0.01 2.05 16 30 H 0.06 2.32 5.93 -2.39 -0.01 2.31 16 31 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 3.12 6.18 -2.39 -0.01 3.11 16 33 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 34 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 35 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.05 2.13 8.14 -2.39 -0.02 2.12 16 37 H 0.09 2.50 8.08 -2.39 -0.02 2.48 16 38 H 0.02 0.77 6.62 -2.39 -0.02 0.76 16 Total: -1.00 -65.63 285.26 0.83 -64.81 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.35 Total: 13.96 kcal Atomic # 6 Polarization: -34.94 SS G_CDS: 3.17 Total: -31.77 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -3.32 Total: -77.13 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -1.39 Total: -17.12 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -65.63 0.83 -64.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333301425.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.096 kcal (2) G-P(sol) polarization free energy of solvation -65.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds