Wall clock time and date at job start Sun Mar 29 2020 21:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46841 * 2 1 4 4 H 1.08993 * 110.59436 * 56.49381 * 3 2 1 5 5 C 1.55100 * 110.68517 * 179.60789 * 3 2 1 6 6 H 1.09001 * 110.71116 * 37.47009 * 5 3 2 7 7 C 1.52999 * 110.80732 * 274.13257 * 5 3 2 8 8 C 1.54595 * 102.84402 * 155.77767 * 5 3 2 9 9 C 1.53989 * 105.22798 * 338.14955 * 8 5 3 10 10 N 1.47899 * 107.05831 * 358.72777 * 9 8 5 11 11 C 1.46895 * 111.00171 * 145.84424 * 10 9 8 12 12 C 1.53004 * 109.47409 * 66.53033 * 11 10 9 13 13 H 1.08997 * 109.47146 * 54.75687 * 12 11 10 14 14 O 1.42907 * 109.46806 * 294.76178 * 12 11 10 15 15 C 1.50694 * 109.47597 * 174.76203 * 12 11 10 16 16 H 1.08011 * 119.99560 * 359.97438 * 15 12 11 17 17 C 1.37877 * 120.00366 * 179.97438 * 15 12 11 18 18 N 1.31515 * 119.99798 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 120.00049 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.46897 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47082 * 120.00283 * 19 17 15 22 22 H 1.48507 * 109.46863 * 240.00385 * 19 17 15 23 23 H 1.08998 * 109.46795 * 198.31713 * 1 2 3 24 24 H 1.08992 * 109.47292 * 318.31974 * 1 2 3 25 25 H 1.09006 * 109.46704 * 78.32581 * 1 2 3 26 26 H 1.08991 * 109.47555 * 239.99884 * 2 1 3 27 27 H 1.08997 * 109.47308 * 119.99613 * 2 1 3 28 28 H 1.08991 * 109.47462 * 305.08789 * 7 5 3 29 29 H 1.09005 * 109.46987 * 65.09280 * 7 5 3 30 30 H 1.09002 * 109.47088 * 185.08466 * 7 5 3 31 31 H 1.09004 * 110.30762 * 219.17939 * 8 5 3 32 32 H 1.09005 * 110.30542 * 97.11684 * 8 5 3 33 33 H 1.09009 * 109.91729 * 118.07873 * 9 8 5 34 34 H 1.08996 * 109.91900 * 239.17390 * 9 8 5 35 35 H 1.09006 * 109.47327 * 186.52336 * 11 10 9 36 36 H 1.09004 * 109.47372 * 306.52519 * 11 10 9 37 37 H 0.96703 * 113.99893 * 302.45415 * 14 12 11 38 38 H 0.96994 * 119.99881 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6367 1.9918 0.8507 5 6 3.5906 1.4755 0.0099 6 1 3.9972 0.6733 -0.6059 7 6 4.1269 1.3873 1.4401 8 6 3.9090 2.8557 -0.6096 9 6 2.6510 3.2394 -1.4105 10 7 1.6923 2.1214 -1.2746 11 6 0.3088 2.6145 -1.2481 12 6 -0.0434 3.2188 -2.6089 13 1 0.1450 2.4846 -3.3922 14 8 0.7614 4.3772 -2.8383 15 6 -1.4993 3.6075 -2.6244 16 1 -2.1122 3.4399 -1.7510 17 6 -2.0489 4.1772 -3.7533 18 7 -1.3026 4.3808 -4.8169 19 14 -3.8534 4.6597 -3.7721 20 1 -4.4678 4.3290 -2.4613 21 1 -3.9730 6.1188 -4.0203 22 1 -4.5536 3.9151 -4.8495 23 1 -0.3633 -0.9756 0.3230 24 1 -0.3633 0.7675 0.6833 25 1 -0.3633 0.2080 -1.0065 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 3.6831 2.1785 2.0441 29 1 3.8692 0.4174 1.8656 30 1 5.2107 1.5029 1.4295 31 1 4.7717 2.7831 -1.2719 32 1 4.0960 3.5886 0.1753 33 1 2.2163 4.1528 -1.0041 34 1 2.9089 3.3860 -2.4593 35 1 -0.3676 1.7875 -1.0319 36 1 0.2094 3.3768 -0.4753 37 1 0.6731 5.0585 -2.1578 38 1 -1.6893 4.7812 -5.6112 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351320188.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:53 Heat of formation + Delta-G solvation = -59.507588 kcal Electronic energy + Delta-G solvation = -16875.877768 eV Core-core repulsion = 14331.728119 eV Total energy + Delta-G solvation = -2544.149649 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.20607 -35.72250 -33.20696 -32.51368 -31.98212 -29.01797 -27.63534 -25.85770 -23.77731 -22.46654 -20.68116 -19.81109 -19.51574 -16.89344 -15.81841 -14.88861 -14.58927 -14.33662 -14.22030 -13.75603 -13.42798 -13.09910 -12.69334 -12.60689 -12.26289 -12.04707 -11.78961 -11.55072 -11.20802 -10.95037 -10.86146 -10.82671 -10.62757 -10.47272 -10.30326 -10.08556 -9.95461 -9.78966 -8.88544 -8.52666 -8.00441 -7.67207 -5.96155 -4.13986 3.28633 3.36790 3.39976 4.38432 4.58778 4.81693 4.93339 5.22187 5.30969 5.44154 5.46495 5.55619 5.58115 5.74231 5.80768 5.83348 5.97626 6.02366 6.11924 6.19505 6.20676 6.27014 6.31858 6.41534 6.44848 6.57814 6.62645 6.67051 6.79006 7.02286 7.59691 7.69839 7.81527 8.02485 8.27425 8.89349 9.43360 9.63357 11.08133 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038924 B = 0.007190 C = 0.006371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.173237 B = 3893.256766 C = 4394.057792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.104 4.104 3 C 0.065 3.935 4 H 0.044 0.956 5 C -0.093 4.093 6 H 0.079 0.921 7 C -0.140 4.140 8 C -0.132 4.132 9 C 0.053 3.947 10 N -0.506 5.506 11 C 0.007 3.993 12 C 0.235 3.765 13 H 0.062 0.938 14 O -0.561 6.561 15 C -0.570 4.570 16 H 0.054 0.946 17 C 0.080 3.920 18 N -0.858 5.858 19 Si 0.887 3.113 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 H 0.045 0.955 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.040 0.960 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.017 0.983 37 H 0.337 0.663 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.904 -5.487 10.559 14.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.142 4.142 3 C -0.044 4.044 4 H 0.062 0.938 5 C -0.112 4.112 6 H 0.097 0.903 7 C -0.198 4.198 8 C -0.170 4.170 9 C -0.075 4.075 10 N -0.231 5.231 11 C -0.120 4.120 12 C 0.177 3.823 13 H 0.080 0.920 14 O -0.363 6.363 15 C -0.609 4.609 16 H 0.072 0.928 17 C -0.126 4.126 18 N -0.494 5.494 19 Si 0.714 3.286 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.209 1.209 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.035 0.965 37 H 0.180 0.820 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.113 -6.124 9.381 13.832 hybrid contribution -1.410 1.240 1.134 2.194 sum 6.703 -4.885 10.515 13.392 Atomic orbital electron populations 1.22007 0.96006 1.00498 1.02872 1.21393 0.95965 0.95535 1.01325 1.22907 0.93853 0.95335 0.92279 0.93839 1.22102 0.95153 0.97933 0.96012 0.90268 1.21771 1.00476 1.01466 0.96078 1.22588 0.98975 0.96291 0.99150 1.22763 0.90959 0.92705 1.01054 1.64739 1.03599 1.24097 1.30617 1.23596 0.88400 0.99111 1.00920 1.19374 0.88669 0.84402 0.89841 0.92007 1.86633 1.68260 1.29717 1.51723 1.21673 0.95777 1.43720 0.99705 0.92818 1.25022 0.97346 0.94860 0.95388 1.70095 1.35042 1.41266 1.03004 0.86652 0.85623 0.78232 0.78067 1.19784 1.20965 1.20875 0.93561 0.93117 0.90852 0.91308 0.92574 0.92955 0.92778 0.92822 0.91704 0.92260 0.94144 0.89690 0.89469 0.96487 0.81968 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 8.32 37.16 0.31 -1.96 16 2 C -0.10 -1.45 5.69 -26.73 -0.15 -1.60 16 3 C 0.06 0.99 1.92 -65.69 -0.13 0.86 16 4 H 0.04 0.69 7.88 -51.93 -0.41 0.28 16 5 C -0.09 -1.23 3.10 -88.67 -0.28 -1.50 16 6 H 0.08 1.05 8.05 -51.93 -0.42 0.64 16 7 C -0.14 -1.50 9.16 37.16 0.34 -1.16 16 8 C -0.13 -1.85 6.50 -25.38 -0.17 -2.02 16 9 C 0.05 0.94 5.04 -2.76 -0.01 0.93 16 10 N -0.51 -9.44 4.98 -222.52 -1.11 -10.55 16 11 C 0.01 0.15 4.18 -3.82 -0.02 0.14 16 12 C 0.23 6.03 3.00 -27.88 -0.08 5.94 16 13 H 0.06 1.80 8.14 -51.93 -0.42 1.37 16 14 O -0.56 -14.37 10.12 -35.23 -0.36 -14.72 16 15 C -0.57 -15.82 8.78 -34.44 -0.30 -16.12 16 16 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 17 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 18 N -0.86 -25.73 12.84 55.43 0.71 -25.02 16 19 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.74 7.62 -51.93 -0.40 0.35 16 25 H 0.07 1.23 6.36 -51.93 -0.33 0.90 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.06 0.66 8.11 -51.93 -0.42 0.24 16 28 H 0.05 0.56 8.13 -51.93 -0.42 0.14 16 29 H 0.05 0.53 8.11 -51.93 -0.42 0.11 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.77 7.85 -51.93 -0.41 0.36 16 33 H 0.04 0.74 6.61 -51.92 -0.34 0.39 16 34 H 0.08 1.69 7.62 -51.93 -0.40 1.29 16 35 H 0.09 1.79 3.94 -51.93 -0.20 1.59 16 36 H 0.02 0.36 7.91 -51.93 -0.41 -0.05 16 37 H 0.34 7.80 8.47 45.56 0.39 8.19 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 293.30 15.07 4.42 4.42 Total: -1.00 -29.78 293.30 -7.78 -37.57 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.85 Total: 6.28 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -0.58 Total: -14.33 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: -0.40 Total: -35.56 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.36 Total: -14.72 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.78 -7.78 -37.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351320188.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.941 kcal (2) G-P(sol) polarization free energy of solvation -29.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds