Wall clock time and date at job start Sun Mar 29 2020 21:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47199 * 2 1 4 4 H 1.09007 * 110.05512 * 306.41854 * 3 2 1 5 5 C 1.54262 * 110.03483 * 67.83419 * 3 2 1 6 6 C 1.54890 * 104.19737 * 142.89787 * 5 3 2 7 7 C 1.54893 * 102.74439 * 322.05546 * 6 5 3 8 8 C 1.53873 * 110.03113 * 185.00038 * 3 2 1 9 9 H 1.08996 * 110.03432 * 0.05014 * 8 3 2 10 10 N 1.46904 * 110.03309 * 121.43175 * 8 3 2 11 11 C 1.46899 * 111.00029 * 205.00069 * 10 8 3 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.47533 * 59.99633 * 12 11 10 14 14 O 1.42905 * 109.47264 * 299.99921 * 12 11 10 15 15 C 1.50697 * 109.47466 * 179.97438 * 12 11 10 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 12 11 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 12 11 18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46756 * 59.99920 * 19 17 15 21 21 H 1.48490 * 109.47381 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47117 * 300.00527 * 19 17 15 23 23 H 1.08998 * 109.46585 * 300.00388 * 1 2 3 24 24 H 1.08994 * 109.46912 * 59.99806 * 1 2 3 25 25 H 1.08993 * 109.47054 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46837 * 239.99881 * 2 1 3 27 27 H 1.09001 * 109.47157 * 119.99918 * 2 1 3 28 28 H 1.09006 * 110.48577 * 261.57531 * 5 3 2 29 29 H 1.08994 * 110.48657 * 24.21298 * 5 3 2 30 30 H 1.08991 * 110.75921 * 80.37446 * 6 5 3 31 31 H 1.09002 * 110.74989 * 203.74442 * 6 5 3 32 32 H 1.09003 * 110.48281 * 279.26364 * 7 6 5 33 33 H 1.08994 * 110.48288 * 156.62656 * 7 6 5 34 34 H 1.00902 * 111.00190 * 81.03770 * 10 8 3 35 35 H 1.09002 * 109.47043 * 299.99792 * 11 10 8 36 36 H 1.09001 * 109.47354 * 59.99854 * 11 10 8 37 37 H 0.96696 * 114.00036 * 299.99911 * 14 12 11 38 38 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5915 1.9975 -0.8240 5 6 1.7007 2.1230 1.3422 6 6 2.9291 3.0201 1.6345 7 6 4.1125 2.1495 1.1439 8 6 3.5735 1.4593 -0.1260 9 1 3.9543 0.4399 -0.1880 10 7 3.9722 2.2184 -1.3189 11 6 5.2898 1.7852 -1.8026 12 6 5.6696 2.5961 -3.0432 13 1 5.7064 3.6551 -2.7879 14 8 4.6942 2.3864 -4.0663 15 6 7.0217 2.1522 -3.5390 16 1 7.5564 1.3696 -3.0213 17 6 7.5755 2.7443 -4.6542 18 7 6.9241 3.6969 -5.2849 19 14 9.2518 2.1945 -5.2684 20 1 9.2029 0.7514 -5.6154 21 1 9.6198 2.9805 -6.4733 22 1 10.2650 2.4138 -4.2052 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 0.7999 2.7292 1.2455 29 1 1.5773 1.3773 2.1275 30 1 2.8722 3.9495 1.0679 31 1 3.0145 3.2220 2.7022 32 1 4.3787 1.4082 1.8974 33 1 4.9719 2.7751 0.9027 34 1 3.9622 3.2107 -1.1361 35 1 6.0338 1.9448 -1.0221 36 1 5.2529 0.7263 -2.0584 37 1 4.6072 1.4643 -4.3438 38 1 7.3136 4.1132 -6.0697 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354702807.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:59 Heat of formation + Delta-G solvation = -79.745202 kcal Electronic energy + Delta-G solvation = -16245.850584 eV Core-core repulsion = 13700.823366 eV Total energy + Delta-G solvation = -2545.027218 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.96084 -35.98925 -33.69072 -32.49375 -32.01607 -28.53535 -27.46055 -26.42129 -23.91008 -22.18098 -20.74604 -20.16007 -19.28319 -16.86719 -15.68975 -15.38517 -14.59247 -14.47228 -14.27240 -13.99423 -13.61322 -13.21087 -13.03350 -12.65378 -12.46551 -11.98241 -11.46019 -11.36681 -11.03884 -10.93283 -10.89698 -10.81706 -10.60985 -10.57792 -10.43257 -10.37054 -10.27707 -9.99263 -8.94848 -8.54267 -8.02140 -7.64138 -5.97045 -4.15472 3.30562 3.35884 3.37515 4.38808 4.63399 4.69039 4.80843 5.12169 5.21654 5.30314 5.33536 5.40807 5.61623 5.72946 5.74264 5.77877 5.84457 5.91042 5.95970 6.02595 6.14254 6.15595 6.23805 6.28895 6.31310 6.37044 6.49673 6.56221 6.68255 6.90420 7.73439 7.74641 7.89295 8.04838 8.25475 8.88509 9.50172 9.66828 11.07106 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042618 B = 0.005475 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.839877 B = 5113.196174 C = 5342.165646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.084 4.084 4 H 0.085 0.915 5 C -0.119 4.119 6 C -0.123 4.123 7 C -0.156 4.156 8 C 0.085 3.915 9 H 0.072 0.928 10 N -0.672 5.672 11 C 0.035 3.965 12 C 0.235 3.765 13 H 0.050 0.950 14 O -0.555 6.555 15 C -0.574 4.574 16 H 0.053 0.947 17 C 0.080 3.920 18 N -0.859 5.859 19 Si 0.889 3.111 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.277 1.277 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.336 0.664 35 H 0.020 0.980 36 H 0.058 0.942 37 H 0.343 0.657 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.208 -4.626 12.401 16.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.103 4.103 4 H 0.103 0.897 5 C -0.156 4.156 6 C -0.161 4.161 7 C -0.195 4.195 8 C -0.026 4.026 9 H 0.090 0.910 10 N -0.302 5.302 11 C -0.094 4.094 12 C 0.177 3.823 13 H 0.068 0.932 14 O -0.356 6.356 15 C -0.612 4.612 16 H 0.072 0.928 17 C -0.126 4.126 18 N -0.495 5.495 19 Si 0.716 3.284 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.154 0.846 35 H 0.038 0.962 36 H 0.077 0.923 37 H 0.186 0.814 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.622 -4.236 11.860 15.849 hybrid contribution 1.796 -0.508 0.357 1.900 sum -7.826 -4.744 12.217 15.264 Atomic orbital electron populations 1.21775 0.96233 1.01037 1.01722 1.21586 0.95487 0.96489 1.01593 1.21869 0.95113 0.95785 0.97494 0.89682 1.22451 0.97600 0.98339 0.97242 1.22459 0.95011 0.98423 1.00192 1.23101 0.98095 0.99290 0.99010 1.22274 0.94372 0.97646 0.88274 0.90999 1.60618 1.30493 1.08436 1.30639 1.22901 0.87181 1.00481 0.98871 1.19286 0.86315 0.94603 0.82142 0.93216 1.86548 1.61399 1.29150 1.58553 1.21620 1.04076 1.22117 1.13437 0.92833 1.25027 0.96985 0.94305 0.96325 1.70078 1.37108 1.23675 1.18623 0.86739 0.84526 0.78841 0.78259 1.20155 1.21187 1.20241 0.92996 0.92648 0.93281 0.91824 0.92624 0.92082 0.92036 0.91500 0.92199 0.91965 0.91708 0.84625 0.96177 0.92332 0.81403 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.77 37.16 0.36 -1.16 16 2 C -0.11 -1.32 5.06 -26.73 -0.14 -1.45 16 3 C -0.08 -1.07 2.72 -89.51 -0.24 -1.32 16 4 H 0.08 1.24 7.92 -51.92 -0.41 0.83 16 5 C -0.12 -1.31 5.53 -25.07 -0.14 -1.45 16 6 C -0.12 -1.43 6.91 -24.74 -0.17 -1.60 16 7 C -0.16 -2.05 6.24 -25.07 -0.16 -2.21 16 8 C 0.09 1.26 2.89 -66.60 -0.19 1.06 16 9 H 0.07 1.10 7.34 -51.93 -0.38 0.72 16 10 N -0.67 -12.14 5.98 -105.55 -0.63 -12.77 16 11 C 0.03 0.72 5.11 -3.83 -0.02 0.70 16 12 C 0.23 6.03 3.03 -27.89 -0.08 5.94 16 13 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 14 O -0.55 -14.73 12.60 -35.23 -0.44 -15.17 16 15 C -0.57 -15.96 8.76 -34.44 -0.30 -16.27 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 18 N -0.86 -25.76 12.84 55.43 0.71 -25.05 16 19 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H 0.05 0.48 7.51 -51.93 -0.39 0.09 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.60 8.00 -51.93 -0.42 0.19 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.63 7.76 -51.93 -0.40 0.23 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.93 7.81 -51.93 -0.41 0.53 16 34 H 0.34 6.10 8.43 -39.29 -0.33 5.76 16 35 H 0.02 0.42 7.95 -51.93 -0.41 0.00 16 36 H 0.06 1.22 8.07 -51.93 -0.42 0.80 16 37 H 0.34 8.26 9.04 45.56 0.41 8.68 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 304.72 15.07 4.59 4.59 Total: -1.00 -29.67 304.72 -8.05 -37.72 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -6.08 Total: 9.92 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -1.18 Total: -15.58 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.08 Total: -37.82 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.44 Total: -15.17 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.67 -8.05 -37.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354702807.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.029 kcal (2) G-P(sol) polarization free energy of solvation -29.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds