Wall clock time and date at job start Sun Mar 29 2020 21:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47199 * 2 1 4 4 H 1.09007 * 110.05512 * 306.41854 * 3 2 1 5 5 C 1.54262 * 110.03483 * 67.83419 * 3 2 1 6 6 C 1.54890 * 104.19737 * 142.89787 * 5 3 2 7 7 C 1.54893 * 102.74439 * 322.05546 * 6 5 3 8 8 C 1.53873 * 110.03113 * 185.00038 * 3 2 1 9 9 H 1.08996 * 110.03432 * 0.05014 * 8 3 2 10 10 N 1.46904 * 110.03309 * 121.43175 * 8 3 2 11 11 C 1.46899 * 111.00029 * 205.00069 * 10 8 3 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.47533 * 59.99633 * 12 11 10 14 14 O 1.42905 * 109.47264 * 299.99921 * 12 11 10 15 15 C 1.50697 * 109.47466 * 179.97438 * 12 11 10 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 12 11 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 12 11 18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46756 * 59.99920 * 19 17 15 21 21 H 1.48490 * 109.47381 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47117 * 300.00527 * 19 17 15 23 23 H 1.08998 * 109.46585 * 300.00388 * 1 2 3 24 24 H 1.08994 * 109.46912 * 59.99806 * 1 2 3 25 25 H 1.08993 * 109.47054 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46837 * 239.99881 * 2 1 3 27 27 H 1.09001 * 109.47157 * 119.99918 * 2 1 3 28 28 H 1.09006 * 110.48577 * 261.57531 * 5 3 2 29 29 H 1.08994 * 110.48657 * 24.21298 * 5 3 2 30 30 H 1.08991 * 110.75921 * 80.37446 * 6 5 3 31 31 H 1.09002 * 110.74989 * 203.74442 * 6 5 3 32 32 H 1.09003 * 110.48281 * 279.26364 * 7 6 5 33 33 H 1.08994 * 110.48288 * 156.62656 * 7 6 5 34 34 H 1.00902 * 111.00190 * 81.03770 * 10 8 3 35 35 H 1.09002 * 109.47043 * 299.99792 * 11 10 8 36 36 H 1.09001 * 109.47354 * 59.99854 * 11 10 8 37 37 H 0.96696 * 114.00036 * 299.99911 * 14 12 11 38 38 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5915 1.9975 -0.8240 5 6 1.7007 2.1230 1.3422 6 6 2.9291 3.0201 1.6345 7 6 4.1125 2.1495 1.1439 8 6 3.5735 1.4593 -0.1260 9 1 3.9543 0.4399 -0.1880 10 7 3.9722 2.2184 -1.3189 11 6 5.2898 1.7852 -1.8026 12 6 5.6696 2.5961 -3.0432 13 1 5.7064 3.6551 -2.7879 14 8 4.6942 2.3864 -4.0663 15 6 7.0217 2.1522 -3.5390 16 1 7.5564 1.3696 -3.0213 17 6 7.5755 2.7443 -4.6542 18 7 6.9241 3.6969 -5.2849 19 14 9.2518 2.1945 -5.2684 20 1 9.2029 0.7514 -5.6154 21 1 9.6198 2.9805 -6.4733 22 1 10.2650 2.4138 -4.2052 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 0.7999 2.7292 1.2455 29 1 1.5773 1.3773 2.1275 30 1 2.8722 3.9495 1.0679 31 1 3.0145 3.2220 2.7022 32 1 4.3787 1.4082 1.8974 33 1 4.9719 2.7751 0.9027 34 1 3.9622 3.2107 -1.1361 35 1 6.0338 1.9448 -1.0221 36 1 5.2529 0.7263 -2.0584 37 1 4.6072 1.4643 -4.3438 38 1 7.3136 4.1132 -6.0697 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354702807.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:59 Heat of formation + Delta-G solvation = -100.422735 kcal Electronic energy + Delta-G solvation = -16246.747229 eV Core-core repulsion = 13700.823366 eV Total energy + Delta-G solvation = -2545.923863 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.10114 -37.88090 -35.09364 -34.21333 -33.57741 -30.24830 -28.40835 -27.95833 -25.67420 -23.16935 -22.55316 -21.28128 -20.42150 -18.98062 -17.02741 -16.69588 -16.50415 -15.99429 -15.79642 -15.35221 -14.97506 -14.65222 -14.36898 -14.05824 -13.64087 -13.33902 -12.94109 -12.89001 -12.78706 -12.59888 -12.32902 -12.07252 -11.90680 -11.87446 -11.62060 -11.56112 -11.33529 -11.22557 -11.00849 -10.70817 -10.05511 -9.12358 -8.13290 -6.39867 1.40400 1.42332 1.50630 2.38712 3.12430 3.33175 3.66841 3.78891 4.04632 4.27465 4.32573 4.40970 4.42015 4.49381 4.57217 4.65195 4.75709 4.80161 4.83741 4.88158 4.97280 5.03306 5.05736 5.15721 5.19827 5.28633 5.34495 5.41449 5.52406 5.60034 5.63951 5.75886 6.06041 6.31417 6.56217 6.74387 7.34440 7.61165 8.91112 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042618 B = 0.005475 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.839877 B = 5113.196174 C = 5342.165646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.080 4.080 4 H 0.064 0.936 5 C -0.111 4.111 6 C -0.121 4.121 7 C -0.153 4.153 8 C 0.082 3.918 9 H 0.066 0.934 10 N -0.678 5.678 11 C 0.057 3.943 12 C 0.234 3.766 13 H 0.016 0.984 14 O -0.570 6.570 15 C -0.590 4.590 16 H 0.058 0.942 17 C 0.026 3.974 18 N -0.900 5.900 19 Si 0.961 3.039 20 H -0.267 1.267 21 H -0.284 1.284 22 H -0.268 1.268 23 H 0.063 0.937 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.047 0.953 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.048 0.952 34 H 0.333 0.667 35 H 0.020 0.980 36 H 0.059 0.941 37 H 0.352 0.648 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.298 -5.726 13.806 17.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.099 4.099 4 H 0.082 0.918 5 C -0.148 4.148 6 C -0.158 4.158 7 C -0.192 4.192 8 C -0.028 4.028 9 H 0.085 0.915 10 N -0.308 5.308 11 C -0.073 4.073 12 C 0.176 3.824 13 H 0.034 0.966 14 O -0.373 6.373 15 C -0.628 4.628 16 H 0.077 0.923 17 C -0.177 4.177 18 N -0.537 5.537 19 Si 0.786 3.214 20 H -0.192 1.192 21 H -0.209 1.209 22 H -0.193 1.193 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.151 0.849 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.196 0.804 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.721 -5.354 13.286 17.311 hybrid contribution 1.780 -0.160 -0.067 1.788 sum -7.941 -5.514 13.220 16.378 Atomic orbital electron populations 1.21746 0.94934 1.01853 1.01907 1.21562 0.96608 0.95353 1.01411 1.21810 0.93322 0.96743 0.98053 0.91779 1.22419 0.97631 0.98500 0.96279 1.22459 0.94376 0.97799 1.01185 1.23044 0.98134 0.99531 0.98467 1.22397 0.95889 0.96881 0.87668 0.91531 1.60581 1.28622 1.08615 1.32970 1.22460 0.88672 0.99392 0.96765 1.19174 0.85921 0.93443 0.83880 0.96612 1.86492 1.61508 1.30081 1.59242 1.22018 1.05059 1.22091 1.13659 0.92348 1.25917 1.01041 0.94201 0.96524 1.70223 1.39181 1.25089 1.19218 0.85591 0.79494 0.78635 0.77717 1.19177 1.20921 1.19309 0.91778 0.93499 0.92185 0.93443 0.91383 0.91126 0.90382 0.92385 0.90272 0.90478 0.93343 0.84908 0.96152 0.92217 0.80373 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.77 71.98 0.70 -1.97 16 2 C -0.11 -2.40 5.06 30.60 0.15 -2.25 16 3 C -0.08 -1.96 2.72 -10.07 -0.03 -1.99 16 4 H 0.06 1.85 7.92 -2.38 -0.02 1.83 16 5 C -0.11 -2.16 5.53 31.67 0.18 -1.99 16 6 C -0.12 -2.54 6.91 31.89 0.22 -2.32 16 7 C -0.15 -3.81 6.24 31.67 0.20 -3.61 16 8 C 0.08 2.35 2.89 45.64 0.13 2.48 16 9 H 0.07 1.98 7.34 -2.39 -0.02 1.96 16 10 N -0.68 -24.73 5.98 -487.84 -2.92 -27.65 16 11 C 0.06 2.38 5.11 86.30 0.44 2.83 16 12 C 0.23 12.31 3.03 29.85 0.09 12.40 16 13 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 14 O -0.57 -30.96 12.60 -148.98 -1.88 -32.84 16 15 C -0.59 -33.06 8.76 25.60 0.22 -32.84 16 16 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 17 C 0.03 1.45 5.40 84.65 0.46 1.91 16 18 N -0.90 -54.85 12.84 21.45 0.28 -54.58 16 19 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 23 H 0.06 1.01 7.51 -2.39 -0.02 0.99 16 24 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.07 1.30 8.00 -2.39 -0.02 1.28 16 28 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.08 1.31 7.76 -2.39 -0.02 1.29 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.05 1.37 7.81 -2.39 -0.02 1.35 16 34 H 0.33 12.39 8.43 -89.69 -0.76 11.63 16 35 H 0.02 0.85 7.95 -2.39 -0.02 0.83 16 36 H 0.06 2.49 8.07 -2.39 -0.02 2.47 16 37 H 0.35 17.27 9.04 -74.06 -0.67 16.60 16 38 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -63.34 304.72 -0.13 -63.47 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: -0.40 Total: 33.15 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: 2.77 Total: -27.35 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -2.64 Total: -82.23 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -1.88 Total: -32.84 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -63.34 -0.13 -63.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354702807.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.957 kcal (2) G-P(sol) polarization free energy of solvation -63.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds