Wall clock time and date at job start Sun Mar 29 2020 21:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08990 * 109.47170 * 54.99895 * 3 2 1 5 5 C 1.53005 * 109.46867 * 294.99684 * 3 2 1 6 6 C 1.53002 * 109.46776 * 174.99999 * 3 2 1 7 7 H 1.09000 * 109.47312 * 60.00037 * 6 3 2 8 8 C 1.52991 * 109.47237 * 299.99687 * 6 3 2 9 9 N 1.46899 * 109.46944 * 179.97438 * 6 3 2 10 10 C 1.47483 * 111.00371 * 275.97211 * 9 6 3 11 11 C 1.53506 * 87.93324 * 221.29706 * 10 9 6 12 12 O 1.42906 * 114.16886 * 272.37492 * 11 10 9 13 13 C 1.50701 * 114.17186 * 139.67127 * 11 10 9 14 14 H 1.08004 * 120.00041 * 266.15970 * 13 11 10 15 15 C 1.37870 * 120.00293 * 86.15849 * 13 11 10 16 16 N 1.31519 * 119.99957 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 120.00352 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46991 * 59.99791 * 17 15 13 19 19 H 1.48497 * 109.47352 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47294 * 300.00050 * 17 15 13 21 21 C 1.47482 * 111.00121 * 179.97438 * 9 6 3 22 22 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 23 23 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 24 24 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 26 26 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 27 27 H 1.09001 * 109.47099 * 60.00379 * 5 3 2 28 28 H 1.09004 * 109.46908 * 180.02562 * 5 3 2 29 29 H 1.09000 * 109.47443 * 300.00098 * 5 3 2 30 30 H 1.09001 * 109.47171 * 180.02562 * 8 6 3 31 31 H 1.09000 * 109.47256 * 300.00385 * 8 6 3 32 32 H 1.09004 * 109.47022 * 60.00184 * 8 6 3 33 33 H 1.08997 * 113.47269 * 336.06237 * 10 9 6 34 34 H 1.08994 * 113.47723 * 106.52645 * 10 9 6 35 35 H 0.96703 * 113.99929 * 273.83683 * 12 11 10 36 36 H 0.97003 * 119.99922 * 179.97438 * 16 15 13 37 37 H 1.09001 * 113.47648 * 253.47251 * 21 9 6 38 38 H 1.09005 * 113.47444 * 23.93940 * 21 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4443 0.1257 7 1 3.9994 0.9052 -0.7161 8 6 3.9695 0.7603 1.4330 9 7 4.0545 2.8292 0.1251 10 6 4.2088 3.3348 -1.2517 11 6 5.5227 3.9906 -0.8045 12 8 5.3661 5.3025 -0.2599 13 6 6.6369 3.8913 -1.8143 14 1 7.3473 3.0798 -1.7565 15 6 6.7494 4.8362 -2.8119 16 7 5.8840 5.8240 -2.8827 17 14 8.1302 4.7128 -4.0640 18 1 8.0187 3.4270 -4.7987 19 1 8.0301 5.8411 -5.0242 20 1 9.4390 4.7715 -3.3651 21 6 5.5239 2.8703 0.2457 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3635 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.5489 2.1252 -1.3970 28 1 1.9989 3.1541 -1.3076 29 1 2.0698 1.5874 -2.1492 30 1 5.0558 0.7620 1.5228 31 1 3.5349 1.2993 2.2748 32 1 3.6062 -0.2674 1.4331 33 1 4.3469 2.5458 -1.9910 34 1 3.4408 4.0529 -1.5392 35 1 5.3657 6.0062 -0.9232 36 1 5.9634 6.4891 -3.5843 37 1 5.8701 3.1950 1.2269 38 1 6.0131 1.9573 -0.0938 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473413453.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:52 Heat of formation + Delta-G solvation = -29.026728 kcal Electronic energy + Delta-G solvation = -16869.352843 eV Core-core repulsion = 14326.524943 eV Total energy + Delta-G solvation = -2542.827900 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.62021 -36.54873 -33.99127 -32.03106 -31.04244 -29.28833 -26.95263 -24.68210 -24.24313 -23.96874 -21.06430 -19.37983 -18.46647 -17.15103 -15.55605 -15.16096 -14.66835 -14.45649 -14.01963 -13.94477 -13.18027 -13.05110 -12.79634 -12.23473 -11.90306 -11.65987 -11.53358 -11.47039 -11.39892 -11.29383 -11.05913 -10.91580 -10.69158 -10.43638 -10.24782 -10.11222 -9.89802 -9.73656 -9.16202 -8.61122 -8.07245 -7.78257 -6.24512 -4.33934 3.21799 3.27211 3.29686 4.26457 4.74967 4.97840 5.09179 5.14007 5.24820 5.43451 5.60078 5.70410 5.76039 5.85485 5.91406 5.97529 6.05234 6.07441 6.18511 6.19017 6.24006 6.31744 6.37651 6.43720 6.51846 6.58433 6.67223 6.76525 6.82695 7.14883 7.27080 7.41085 7.79371 8.01038 8.13474 8.67700 9.35852 9.72470 10.81362 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038431 B = 0.006947 C = 0.006702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.407369 B = 4029.428593 C = 4176.833808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.075 4.075 4 H 0.072 0.928 5 C -0.156 4.156 6 C 0.047 3.953 7 H 0.041 0.959 8 C -0.146 4.146 9 N -0.466 5.466 10 C -0.015 4.015 11 C 0.243 3.757 12 O -0.570 6.570 13 C -0.534 4.534 14 H 0.064 0.936 15 C 0.071 3.929 16 N -0.899 5.899 17 Si 0.903 3.097 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.006 3.994 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.389 0.611 36 H 0.271 0.729 37 H 0.068 0.932 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.480 -8.651 3.082 11.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.094 4.094 4 H 0.090 0.910 5 C -0.213 4.213 6 C -0.063 4.063 7 H 0.059 0.941 8 C -0.203 4.203 9 N -0.188 5.188 10 C -0.144 4.144 11 C 0.202 3.798 12 O -0.383 6.383 13 C -0.572 4.572 14 H 0.083 0.917 15 C -0.131 4.131 16 N -0.540 5.540 17 Si 0.730 3.270 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.123 4.123 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.245 0.755 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.001 -8.487 4.022 11.714 hybrid contribution 1.113 -0.384 -1.878 2.217 sum -5.887 -8.871 2.144 10.861 Atomic orbital electron populations 1.21800 0.96246 1.00900 1.01871 1.21660 0.95544 0.97096 1.01668 1.21034 0.94569 0.95007 0.98771 0.90991 1.22104 1.00073 1.02484 0.96643 1.22231 0.95186 0.92021 0.96832 0.94144 1.21889 1.01213 0.99433 0.97761 1.68948 1.12784 1.15317 1.21781 1.24713 1.01546 0.99060 0.89108 1.19429 0.90473 0.81296 0.88634 1.86033 1.95686 1.16820 1.39729 1.21559 1.13176 1.11207 1.11266 0.91737 1.25052 0.95940 0.94725 0.97369 1.69292 1.35905 1.14132 1.34638 0.86472 0.82142 0.77757 0.80586 1.20105 1.20993 1.19946 1.23988 0.88872 0.98735 1.00669 0.92929 0.92559 0.93342 0.92429 0.91931 0.93472 0.90689 0.93428 0.92813 0.92298 0.92721 0.92572 0.91178 0.75535 0.91813 0.91385 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.67 37.16 0.36 -1.29 16 2 C -0.12 -1.52 5.19 -26.73 -0.14 -1.66 16 3 C -0.07 -1.14 2.16 -90.62 -0.20 -1.34 16 4 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 5 C -0.16 -2.47 7.96 37.16 0.30 -2.17 16 6 C 0.05 0.81 1.57 -67.72 -0.11 0.70 16 7 H 0.04 0.74 7.51 -51.93 -0.39 0.34 16 8 C -0.15 -2.18 8.75 37.15 0.32 -1.86 16 9 N -0.47 -9.79 6.04 -236.40 -1.43 -11.22 16 10 C -0.02 -0.35 4.96 -7.49 -0.04 -0.39 16 11 C 0.24 6.26 1.57 -91.22 -0.14 6.11 16 12 O -0.57 -15.74 13.54 -35.23 -0.48 -16.21 16 13 C -0.53 -14.38 8.69 -34.44 -0.30 -14.68 16 14 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 15 C 0.07 1.88 5.40 -17.82 -0.10 1.78 16 16 N -0.90 -24.27 11.02 55.43 0.61 -23.66 16 17 Si 0.90 20.48 29.54 -169.99 -5.02 15.45 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 C 0.01 0.14 5.86 -7.46 -0.04 0.10 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.62 6.56 -51.93 -0.34 0.28 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.73 6.17 -51.93 -0.32 0.41 16 27 H 0.05 0.65 6.57 -51.93 -0.34 0.31 16 28 H 0.07 1.37 5.06 -51.93 -0.26 1.11 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.82 7.03 -51.93 -0.37 0.46 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.69 6.32 -51.93 -0.33 0.37 16 33 H 0.06 1.30 7.50 -51.93 -0.39 0.91 16 34 H 0.07 1.70 6.64 -51.93 -0.35 1.35 16 35 H 0.39 10.87 6.34 45.56 0.29 11.16 16 36 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 38 H 0.06 1.29 7.62 -51.93 -0.40 0.89 16 LS Contribution 289.66 15.07 4.37 4.37 Total: -1.00 -27.21 289.66 -7.72 -34.93 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -5.69 Total: 11.04 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -0.08 Total: -14.69 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: -0.82 Total: -34.88 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.48 Total: -16.21 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.21 -7.72 -34.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473413453.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.906 kcal (2) G-P(sol) polarization free energy of solvation -27.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds