Wall clock time and date at job start Sun Mar 29 2020 21:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08990 * 109.47170 * 54.99895 * 3 2 1 5 5 C 1.53005 * 109.46867 * 294.99684 * 3 2 1 6 6 C 1.53002 * 109.46776 * 174.99999 * 3 2 1 7 7 H 1.09000 * 109.47312 * 60.00037 * 6 3 2 8 8 C 1.52991 * 109.47237 * 299.99687 * 6 3 2 9 9 N 1.46899 * 109.46944 * 179.97438 * 6 3 2 10 10 C 1.47483 * 111.00371 * 275.97211 * 9 6 3 11 11 C 1.53506 * 87.93324 * 221.29706 * 10 9 6 12 12 O 1.42906 * 114.16886 * 272.37492 * 11 10 9 13 13 C 1.50701 * 114.17186 * 139.67127 * 11 10 9 14 14 H 1.08004 * 120.00041 * 266.15970 * 13 11 10 15 15 C 1.37870 * 120.00293 * 86.15849 * 13 11 10 16 16 N 1.31519 * 119.99957 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 120.00352 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46991 * 59.99791 * 17 15 13 19 19 H 1.48497 * 109.47352 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47294 * 300.00050 * 17 15 13 21 21 C 1.47482 * 111.00121 * 179.97438 * 9 6 3 22 22 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 23 23 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 24 24 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 26 26 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 27 27 H 1.09001 * 109.47099 * 60.00379 * 5 3 2 28 28 H 1.09004 * 109.46908 * 180.02562 * 5 3 2 29 29 H 1.09000 * 109.47443 * 300.00098 * 5 3 2 30 30 H 1.09001 * 109.47171 * 180.02562 * 8 6 3 31 31 H 1.09000 * 109.47256 * 300.00385 * 8 6 3 32 32 H 1.09004 * 109.47022 * 60.00184 * 8 6 3 33 33 H 1.08997 * 113.47269 * 336.06237 * 10 9 6 34 34 H 1.08994 * 113.47723 * 106.52645 * 10 9 6 35 35 H 0.96703 * 113.99929 * 273.83683 * 12 11 10 36 36 H 0.97003 * 119.99922 * 179.97438 * 16 15 13 37 37 H 1.09001 * 113.47648 * 253.47251 * 21 9 6 38 38 H 1.09005 * 113.47444 * 23.93940 * 21 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4443 0.1257 7 1 3.9994 0.9052 -0.7161 8 6 3.9695 0.7603 1.4330 9 7 4.0545 2.8292 0.1251 10 6 4.2088 3.3348 -1.2517 11 6 5.5227 3.9906 -0.8045 12 8 5.3661 5.3025 -0.2599 13 6 6.6369 3.8913 -1.8143 14 1 7.3473 3.0798 -1.7565 15 6 6.7494 4.8362 -2.8119 16 7 5.8840 5.8240 -2.8827 17 14 8.1302 4.7128 -4.0640 18 1 8.0187 3.4270 -4.7987 19 1 8.0301 5.8411 -5.0242 20 1 9.4390 4.7715 -3.3651 21 6 5.5239 2.8703 0.2457 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3635 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.5489 2.1252 -1.3970 28 1 1.9989 3.1541 -1.3076 29 1 2.0698 1.5874 -2.1492 30 1 5.0558 0.7620 1.5228 31 1 3.5349 1.2993 2.2748 32 1 3.6062 -0.2674 1.4331 33 1 4.3469 2.5458 -1.9910 34 1 3.4408 4.0529 -1.5392 35 1 5.3657 6.0062 -0.9232 36 1 5.9634 6.4891 -3.5843 37 1 5.8701 3.1950 1.2269 38 1 6.0131 1.9573 -0.0938 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473413453.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:52 Heat of formation + Delta-G solvation = -48.474546 kcal Electronic energy + Delta-G solvation = -16870.196164 eV Core-core repulsion = 14326.524943 eV Total energy + Delta-G solvation = -2543.671221 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.31958 -37.99924 -35.78582 -34.09744 -32.41092 -30.48795 -28.81934 -26.46671 -25.82179 -25.28008 -22.43655 -20.77178 -20.29146 -19.13111 -17.18701 -17.11294 -16.08629 -15.94981 -15.60862 -15.47384 -14.77118 -14.36591 -14.16247 -13.76266 -13.54343 -13.35250 -13.05647 -12.96746 -12.77936 -12.64998 -12.56791 -12.44709 -12.25467 -12.20115 -11.78876 -11.43015 -11.30669 -11.16888 -11.01494 -10.61757 -9.98132 -9.58168 -8.25294 -6.43063 1.42288 1.43609 1.52045 2.36674 2.95298 3.22738 3.80881 3.89827 3.99365 4.12030 4.25435 4.32385 4.43047 4.47576 4.57070 4.64481 4.69291 4.75320 4.81303 4.89711 4.93065 5.04904 5.08950 5.16035 5.16700 5.22635 5.27170 5.34247 5.42638 5.51914 5.60082 5.63721 5.75760 5.97584 6.43990 6.62271 7.29765 7.56568 8.79710 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038431 B = 0.006947 C = 0.006702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.407369 B = 4029.428593 C = 4176.833808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.071 4.071 4 H 0.066 0.934 5 C -0.153 4.153 6 C 0.042 3.958 7 H 0.034 0.966 8 C -0.140 4.140 9 N -0.468 5.468 10 C 0.004 3.996 11 C 0.212 3.788 12 O -0.584 6.584 13 C -0.559 4.559 14 H 0.064 0.936 15 C 0.027 3.973 16 N -0.920 5.920 17 Si 0.968 3.032 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.271 1.271 21 C 0.017 3.983 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.383 0.617 36 H 0.275 0.725 37 H 0.066 0.934 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.769 -10.379 3.113 12.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.090 4.090 4 H 0.084 0.916 5 C -0.210 4.210 6 C -0.067 4.067 7 H 0.052 0.948 8 C -0.197 4.197 9 N -0.191 5.191 10 C -0.126 4.126 11 C 0.171 3.829 12 O -0.396 6.396 13 C -0.597 4.597 14 H 0.082 0.918 15 C -0.173 4.173 16 N -0.561 5.561 17 Si 0.793 3.207 18 H -0.195 1.195 19 H -0.204 1.204 20 H -0.196 1.196 21 C -0.111 4.111 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.237 0.763 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.298 -10.229 4.068 13.208 hybrid contribution 1.165 0.158 -1.861 2.201 sum -6.133 -10.072 2.207 11.997 Atomic orbital electron populations 1.21785 0.94906 1.02087 1.01857 1.21612 0.96670 0.94727 1.02328 1.21022 0.92961 0.97057 0.97949 0.91586 1.22046 1.01308 1.00553 0.97082 1.22381 0.96572 0.89708 0.98034 0.94793 1.21862 1.00994 1.00798 0.96072 1.68881 1.11919 1.18265 1.20009 1.24382 0.99649 0.98376 0.90170 1.19843 0.91601 0.81175 0.90248 1.86011 1.95892 1.17683 1.39981 1.21821 1.13900 1.11753 1.12178 0.91781 1.25824 0.98124 0.94287 0.99049 1.69373 1.37084 1.14527 1.35160 0.85454 0.79118 0.77951 0.78184 1.19469 1.20437 1.19626 1.23861 0.89953 0.97805 0.99527 0.92689 0.92872 0.91585 0.92322 0.90678 0.91474 0.93747 0.93763 0.93282 0.92372 0.89798 0.92961 0.92950 0.76252 0.91556 0.91575 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.67 71.98 0.70 -2.11 16 2 C -0.12 -2.55 5.19 30.59 0.16 -2.39 16 3 C -0.07 -2.05 2.16 -10.79 -0.02 -2.08 16 4 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 5 C -0.15 -4.74 7.96 71.98 0.57 -4.17 16 6 C 0.04 1.40 1.57 44.91 0.07 1.47 16 7 H 0.03 1.19 7.51 -2.39 -0.02 1.17 16 8 C -0.14 -3.88 8.75 71.98 0.63 -3.25 16 9 N -0.47 -19.66 6.04 -902.24 -5.45 -25.10 16 10 C 0.00 0.17 4.96 83.61 0.41 0.59 16 11 C 0.21 11.11 1.57 -11.18 -0.02 11.09 16 12 O -0.58 -33.07 13.54 -148.98 -2.02 -35.09 16 13 C -0.56 -30.37 8.69 25.60 0.22 -30.14 16 14 H 0.06 3.39 7.81 -2.91 -0.02 3.36 16 15 C 0.03 1.42 5.40 84.65 0.46 1.88 16 16 N -0.92 -50.35 11.02 21.45 0.24 -50.12 16 17 Si 0.97 41.83 29.54 68.60 2.03 43.86 16 18 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 19 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 21 C 0.02 0.78 5.86 83.63 0.49 1.27 16 22 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.05 1.03 6.56 -2.39 -0.02 1.01 16 24 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 1.48 6.17 -2.39 -0.01 1.47 16 27 H 0.07 1.78 6.57 -2.39 -0.02 1.76 16 28 H 0.04 1.64 5.06 -2.38 -0.01 1.63 16 29 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.05 1.40 7.03 -2.39 -0.02 1.38 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 1.84 6.32 -2.38 -0.02 1.82 16 33 H 0.05 2.47 7.50 -2.39 -0.02 2.45 16 34 H 0.05 2.63 6.64 -2.39 -0.02 2.62 16 35 H 0.38 22.13 6.34 -74.06 -0.47 21.66 16 36 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 37 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 38 H 0.07 2.99 7.62 -2.38 -0.02 2.98 16 Total: -1.00 -57.93 289.66 -0.97 -58.90 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: 0.56 Total: 35.40 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 3.67 Total: -27.85 kcal Atomic # 7 Polarization: -70.01 SS G_CDS: -5.21 Total: -75.22 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -2.02 Total: -35.09 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -57.93 -0.97 -58.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473413453.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.428 kcal (2) G-P(sol) polarization free energy of solvation -57.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds