Wall clock time and date at job start Sun Mar 29 2020 21:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46955 * 2 1 4 4 H 1.08996 * 109.46874 * 54.99810 * 3 2 1 5 5 C 1.52999 * 109.47093 * 295.00022 * 3 2 1 6 6 C 1.52995 * 109.46932 * 175.00169 * 3 2 1 7 7 H 1.09004 * 109.47215 * 305.00078 * 6 3 2 8 8 C 1.52995 * 109.47354 * 65.00256 * 6 3 2 9 9 N 1.46902 * 109.46997 * 185.00175 * 6 3 2 10 10 C 1.47483 * 110.99877 * 165.09270 * 9 6 3 11 11 C 1.53520 * 87.92855 * 221.29628 * 10 9 6 12 12 O 1.42902 * 114.16694 * 272.37656 * 11 10 9 13 13 C 1.50695 * 114.17120 * 139.67293 * 11 10 9 14 14 H 1.08001 * 119.99980 * 266.16271 * 13 11 10 15 15 C 1.37882 * 120.00074 * 86.15659 * 13 11 10 16 16 N 1.31509 * 119.99899 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99745 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47735 * 59.99934 * 17 15 13 19 19 H 1.48505 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47133 * 299.99518 * 17 15 13 21 21 C 1.47482 * 111.00019 * 69.11959 * 9 6 3 22 22 H 1.09003 * 109.47153 * 299.99781 * 1 2 3 23 23 H 1.09001 * 109.47720 * 60.00213 * 1 2 3 24 24 H 1.09001 * 109.47331 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46687 * 240.00353 * 2 1 3 26 26 H 1.08994 * 109.47232 * 120.00222 * 2 1 3 27 27 H 1.09004 * 109.47034 * 60.00347 * 5 3 2 28 28 H 1.09000 * 109.47266 * 179.97438 * 5 3 2 29 29 H 1.09000 * 109.47408 * 300.00342 * 5 3 2 30 30 H 1.08998 * 109.47287 * 185.85223 * 8 6 3 31 31 H 1.09002 * 109.46901 * 305.84617 * 8 6 3 32 32 H 1.08995 * 109.47352 * 65.84671 * 8 6 3 33 33 H 1.09002 * 113.47615 * 336.06032 * 10 9 6 34 34 H 1.08993 * 113.47835 * 106.53199 * 10 9 6 35 35 H 0.96699 * 114.00126 * 273.84241 * 12 11 10 36 36 H 0.96999 * 119.99968 * 180.02562 * 16 15 13 37 37 H 1.09002 * 113.47516 * 253.46711 * 21 9 6 38 38 H 1.08993 * 113.47578 * 23.93520 * 21 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5647 1.4444 0.1257 7 1 3.8570 0.8800 1.0113 8 6 4.1797 0.7977 -1.1171 9 7 4.0445 2.8276 0.2461 10 6 5.4409 2.8634 0.7192 11 6 5.0472 4.0433 1.6191 12 8 5.1493 5.3207 0.9868 13 6 5.6654 4.0048 2.9928 14 1 5.1259 3.5593 3.8155 15 6 6.9200 4.5381 3.1994 16 7 7.5773 5.0800 2.1975 17 14 7.6866 4.4897 4.9022 18 1 7.8192 3.0787 5.3455 19 1 9.0288 5.1237 4.8590 20 1 6.8210 5.2289 5.8559 21 6 3.6496 3.4131 1.5409 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 0.5488 2.1253 -1.3969 28 1 1.9981 3.1544 -1.3072 29 1 2.0697 1.5875 -2.1492 30 1 5.2573 0.7046 -0.9827 31 1 3.7453 -0.1910 -1.2649 32 1 3.9746 1.4187 -1.9890 33 1 5.7341 1.9726 1.2748 34 1 6.1562 3.1303 -0.0586 35 1 6.0306 5.7154 1.0375 36 1 8.4600 5.4549 2.3428 37 1 2.8468 4.1460 1.4592 38 1 3.4647 2.6691 2.3155 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473413454.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:53 Heat of formation + Delta-G solvation = -51.471364 kcal Electronic energy + Delta-G solvation = -16792.527159 eV Core-core repulsion = 14248.725987 eV Total energy + Delta-G solvation = -2543.801173 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.25526 -38.13655 -35.79755 -34.10699 -32.47372 -29.63223 -28.81623 -26.94399 -25.99918 -25.47165 -22.50184 -20.60767 -19.98188 -19.01901 -17.12938 -16.92387 -16.58168 -15.91935 -15.82061 -15.13595 -15.00989 -14.31539 -14.14002 -13.73166 -13.40107 -13.36190 -13.11982 -12.94378 -12.82554 -12.72343 -12.62599 -12.29515 -12.16120 -12.14630 -11.89280 -11.49681 -11.26384 -11.23334 -10.95186 -10.61501 -10.04670 -9.60587 -8.26038 -6.44137 1.42080 1.43526 1.51978 2.36334 2.94469 3.22868 3.76413 3.91578 3.96101 4.17414 4.26478 4.38330 4.41344 4.45091 4.55725 4.63318 4.72491 4.75969 4.81003 4.90178 4.99773 5.04633 5.13181 5.15672 5.18737 5.24784 5.25697 5.33450 5.41843 5.49151 5.60108 5.70551 5.74817 5.96630 6.42426 6.61446 7.28957 7.55715 8.79048 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042399 B = 0.006627 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.235651 B = 4223.975944 C = 4389.497535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.078 4.078 4 H 0.053 0.947 5 C -0.134 4.134 6 C 0.043 3.957 7 H 0.032 0.968 8 C -0.135 4.135 9 N -0.462 5.462 10 C -0.006 4.006 11 C 0.218 3.782 12 O -0.583 6.583 13 C -0.559 4.559 14 H 0.064 0.936 15 C 0.027 3.973 16 N -0.920 5.920 17 Si 0.969 3.031 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.271 1.271 21 C 0.019 3.981 22 H 0.048 0.952 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.038 0.962 29 H 0.061 0.939 30 H 0.038 0.962 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.383 0.617 36 H 0.275 0.725 37 H 0.065 0.935 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.718 -9.484 -3.688 13.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.097 4.097 4 H 0.072 0.928 5 C -0.191 4.191 6 C -0.066 4.066 7 H 0.050 0.950 8 C -0.192 4.192 9 N -0.185 5.185 10 C -0.136 4.136 11 C 0.177 3.823 12 O -0.395 6.395 13 C -0.597 4.597 14 H 0.082 0.918 15 C -0.173 4.173 16 N -0.561 5.561 17 Si 0.794 3.206 18 H -0.194 1.194 19 H -0.204 1.204 20 H -0.196 1.196 21 C -0.110 4.110 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.238 0.762 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.382 -9.216 -4.527 13.909 hybrid contribution 1.547 -0.110 1.662 2.273 sum -7.836 -9.325 -2.865 12.513 Atomic orbital electron populations 1.21789 0.94815 1.02099 1.01927 1.21580 0.96707 0.94766 1.02212 1.21088 0.92589 0.97235 0.98796 0.92833 1.21744 1.00758 1.00067 0.96548 1.22369 0.96393 0.89826 0.98022 0.94976 1.21779 0.99540 1.00766 0.97100 1.68901 1.04750 1.16288 1.28544 1.24347 0.91344 1.00278 0.97634 1.19753 0.91949 0.81093 0.89534 1.86010 1.38707 1.34905 1.79885 1.21823 1.02297 1.39913 0.95707 0.91769 1.25836 0.96834 0.93394 1.01232 1.69369 1.14456 1.39598 1.32714 0.85440 0.77431 0.78630 0.79119 1.19443 1.20397 1.19636 1.23840 0.98243 0.97740 0.91213 0.93324 0.92065 0.91654 0.90817 0.92482 0.91826 0.94257 0.92030 0.94331 0.89934 0.92050 0.92803 0.93419 0.76230 0.91526 0.91686 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.67 71.98 0.70 -2.02 16 2 C -0.11 -2.48 5.04 30.59 0.15 -2.32 16 3 C -0.08 -2.18 2.16 -10.79 -0.02 -2.20 16 4 H 0.05 1.64 7.35 -2.39 -0.02 1.62 16 5 C -0.13 -3.58 8.35 71.98 0.60 -2.98 16 6 C 0.04 1.43 1.43 44.91 0.06 1.50 16 7 H 0.03 1.13 7.56 -2.39 -0.02 1.11 16 8 C -0.13 -3.91 8.43 71.98 0.61 -3.31 16 9 N -0.46 -19.43 5.58 -902.70 -5.04 -24.46 16 10 C -0.01 -0.30 6.56 83.58 0.55 0.25 16 11 C 0.22 11.43 1.57 -11.19 -0.02 11.41 16 12 O -0.58 -33.09 13.54 -148.98 -2.02 -35.10 16 13 C -0.56 -30.51 8.69 25.60 0.22 -30.29 16 14 H 0.06 3.40 7.81 -2.91 -0.02 3.38 16 15 C 0.03 1.42 5.40 84.66 0.46 1.87 16 16 N -0.92 -50.45 11.02 21.45 0.24 -50.22 16 17 Si 0.97 41.88 29.54 68.60 2.03 43.91 16 18 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 19 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 21 C 0.02 0.84 6.10 83.58 0.51 1.35 16 22 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.06 1.06 6.57 -2.39 -0.02 1.05 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.07 1.44 6.69 -2.39 -0.02 1.42 16 26 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.06 1.44 6.57 -2.38 -0.02 1.42 16 28 H 0.04 1.26 7.75 -2.39 -0.02 1.24 16 29 H 0.06 1.51 6.48 -2.39 -0.02 1.49 16 30 H 0.04 1.19 7.85 -2.39 -0.02 1.17 16 31 H 0.08 1.90 6.42 -2.39 -0.02 1.88 16 32 H 0.06 1.81 6.70 -2.39 -0.02 1.79 16 33 H 0.05 2.55 7.64 -2.39 -0.02 2.53 16 34 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.38 22.17 6.34 -74.06 -0.47 21.70 16 36 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 37 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 38 H 0.07 2.95 7.74 -2.39 -0.02 2.93 16 Total: -1.00 -58.04 292.87 -0.42 -58.46 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: 0.56 Total: 34.17 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: 3.82 Total: -26.75 kcal Atomic # 7 Polarization: -69.88 SS G_CDS: -4.80 Total: -74.68 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -2.02 Total: -35.10 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -58.04 -0.42 -58.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473413454.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.987 kcal (2) G-P(sol) polarization free energy of solvation -58.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds