Wall clock time and date at job start Sun Mar 29 2020 21:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09000 * 110.26939 * 305.69726 * 3 2 1 5 5 C 1.54590 * 110.30833 * 67.78774 * 3 2 1 6 6 C 1.55108 * 102.84647 * 140.81701 * 5 3 2 7 7 N 1.48543 * 103.27915 * 322.69500 * 6 5 3 8 8 C 1.46898 * 110.99651 * 159.66952 * 7 6 5 9 9 C 1.52999 * 109.47364 * 52.60129 * 8 7 6 10 10 H 1.08990 * 109.47492 * 59.99758 * 9 8 7 11 11 O 1.42900 * 109.46956 * 299.99670 * 9 8 7 12 12 C 1.50703 * 109.46860 * 180.02562 * 9 8 7 13 13 H 1.07994 * 120.00336 * 359.97438 * 12 9 8 14 14 C 1.37878 * 119.99835 * 179.97438 * 12 9 8 15 15 N 1.31513 * 120.00079 * 0.02562 * 14 12 9 16 16 Si 1.86795 * 120.00042 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47246 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47313 * 120.00430 * 16 14 12 19 19 H 1.48505 * 109.47193 * 240.00481 * 16 14 12 20 20 C 1.47897 * 105.82252 * 39.15070 * 7 6 5 21 21 H 1.09002 * 110.08220 * 94.11673 * 20 7 6 22 22 C 1.53001 * 109.91667 * 215.31763 * 20 7 6 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 1.08999 * 110.72349 * 259.22792 * 5 3 2 29 29 H 1.08993 * 110.72658 * 22.51937 * 5 3 2 30 30 H 1.08996 * 110.68806 * 204.22179 * 6 5 3 31 31 H 1.08998 * 110.59512 * 81.11827 * 6 5 3 32 32 H 1.09004 * 109.46981 * 172.60245 * 8 7 6 33 33 H 1.09004 * 109.47106 * 292.59754 * 8 7 6 34 34 H 0.96699 * 113.99944 * 300.00386 * 11 9 8 35 35 H 0.97000 * 120.00549 * 179.97438 * 15 14 12 36 36 H 1.09005 * 109.46932 * 177.59123 * 22 20 7 37 37 H 1.09001 * 109.46807 * 297.59136 * 22 20 7 38 38 H 1.08996 * 109.46953 * 57.59344 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6034 1.9975 -0.8304 5 6 1.7021 2.1311 1.3422 6 6 2.9721 2.9751 1.6262 7 7 4.0753 2.1032 1.1472 8 6 5.2894 2.8872 0.8842 9 6 5.6322 3.7257 2.1171 10 1 5.8025 3.0671 2.9687 11 8 4.5480 4.6100 2.4082 12 6 6.8774 4.5304 1.8469 13 1 7.3748 4.4514 0.8916 14 6 7.3817 5.3677 2.8194 15 7 6.7763 5.4637 3.9830 16 14 8.9256 6.3646 2.4848 17 1 9.4119 6.0780 1.1113 18 1 8.6170 7.8118 2.6094 19 1 9.9757 5.9959 3.4680 20 6 3.5771 1.4660 -0.0910 21 1 3.8888 2.0440 -0.9609 22 6 4.1149 0.0374 -0.1947 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 0.8268 2.7721 1.2373 29 1 1.5477 1.3910 2.1273 30 1 3.0730 3.1718 2.6935 31 1 2.9467 3.9077 1.0626 32 1 6.1164 2.2127 0.6621 33 1 5.1192 3.5459 0.0326 34 1 4.3402 5.2263 1.6926 35 1 7.1313 6.0524 4.6673 36 1 3.7094 -0.4396 -1.0870 37 1 5.2028 0.0625 -0.2586 38 1 3.8158 -0.5284 0.6875 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653354418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:41 Heat of formation + Delta-G solvation = -57.915757 kcal Electronic energy + Delta-G solvation = -16719.314629 eV Core-core repulsion = 14175.234006 eV Total energy + Delta-G solvation = -2544.080622 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.29201 -36.06406 -33.58728 -32.12889 -31.01018 -30.10457 -27.42603 -25.17904 -24.15714 -22.73555 -21.10476 -20.05172 -18.62380 -16.96459 -15.64892 -14.87842 -14.60393 -14.44798 -14.26665 -14.08308 -13.74617 -13.32856 -12.68906 -12.46070 -12.12049 -11.91895 -11.57671 -11.41355 -11.18701 -11.04064 -10.93683 -10.88248 -10.64425 -10.41441 -10.27857 -10.24615 -10.02501 -9.79241 -8.95182 -8.56473 -7.95891 -7.70152 -5.99449 -4.17345 3.27256 3.35519 3.38902 4.37382 4.64194 4.83881 4.93214 5.05696 5.27495 5.39955 5.43422 5.58919 5.65899 5.72960 5.83585 5.93342 5.95253 5.99347 6.11676 6.12132 6.20156 6.25488 6.31878 6.37903 6.44455 6.47349 6.64232 6.69115 6.83127 7.03062 7.62148 7.69075 7.79136 7.97086 8.22848 8.85942 9.37292 9.59088 11.04755 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.058083 B = 0.006029 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.956152 B = 4642.861382 C = 4948.037184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.094 4.094 4 H 0.065 0.935 5 C -0.127 4.127 6 C 0.056 3.944 7 N -0.511 5.511 8 C 0.025 3.975 9 C 0.232 3.768 10 H 0.063 0.937 11 O -0.560 6.560 12 C -0.571 4.571 13 H 0.055 0.945 14 C 0.080 3.920 15 N -0.858 5.858 16 Si 0.888 3.112 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.061 3.939 21 H 0.042 0.958 22 C -0.133 4.133 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.039 0.961 32 H 0.066 0.934 33 H 0.020 0.980 34 H 0.340 0.660 35 H 0.259 0.741 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.682 -8.074 -7.787 14.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.113 4.113 4 H 0.084 0.916 5 C -0.165 4.165 6 C -0.071 4.071 7 N -0.236 5.236 8 C -0.103 4.103 9 C 0.174 3.826 10 H 0.080 0.920 11 O -0.363 6.363 12 C -0.610 4.610 13 H 0.073 0.927 14 C -0.126 4.126 15 N -0.494 5.494 16 Si 0.716 3.284 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.048 4.048 21 H 0.060 0.940 22 C -0.191 4.191 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.039 0.961 34 H 0.184 0.816 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.518 -8.726 -6.644 14.522 hybrid contribution 0.879 1.551 -1.403 2.268 sum -8.639 -7.175 -8.047 13.815 Atomic orbital electron populations 1.21813 0.96505 1.01025 1.01656 1.21700 0.94996 0.96348 1.02118 1.22045 0.94905 0.96189 0.98185 0.91625 1.22766 0.98293 0.99070 0.96344 1.23304 0.88028 0.93068 1.02698 1.64769 1.04380 1.29319 1.25108 1.23149 0.91409 0.95737 1.00049 1.19373 0.84618 0.87288 0.91309 0.91972 1.86654 1.53794 1.50727 1.45118 1.21661 1.11619 1.27083 1.00616 0.92721 1.25021 0.96436 0.96354 0.94804 1.70088 1.38490 1.36481 1.04371 0.86627 0.83391 0.80019 0.78395 1.19766 1.20930 1.20855 1.22426 0.93491 0.96150 0.92721 0.94032 1.21823 1.00519 0.95833 1.00922 0.93214 0.93205 0.92645 0.91394 0.92007 0.92069 0.91320 0.88266 0.94256 0.91519 0.96138 0.81643 0.93076 0.93050 0.93205 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.77 37.16 0.36 -1.14 16 2 C -0.11 -1.29 4.12 -26.73 -0.11 -1.40 16 3 C -0.09 -1.26 3.01 -89.26 -0.27 -1.53 16 4 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 5 C -0.13 -1.83 5.81 -24.78 -0.14 -1.97 16 6 C 0.06 1.02 4.65 -1.80 -0.01 1.01 16 7 N -0.51 -9.62 5.03 -222.45 -1.12 -10.74 16 8 C 0.02 0.53 4.82 -3.83 -0.02 0.51 16 9 C 0.23 5.90 2.91 -27.88 -0.08 5.82 16 10 H 0.06 1.79 8.14 -51.93 -0.42 1.37 16 11 O -0.56 -13.96 8.99 -35.23 -0.32 -14.28 16 12 C -0.57 -15.80 8.76 -34.44 -0.30 -16.10 16 13 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 14 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 15 N -0.86 -25.48 12.84 55.43 0.71 -24.77 16 16 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C 0.06 0.95 3.08 -66.64 -0.21 0.74 16 21 H 0.04 0.67 7.58 -51.93 -0.39 0.28 16 22 C -0.13 -1.84 8.35 37.16 0.31 -1.53 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.56 7.52 -51.93 -0.39 0.16 16 26 H 0.07 0.82 6.91 -51.93 -0.36 0.46 16 27 H 0.06 0.65 6.50 -51.93 -0.34 0.31 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.99 7.79 -51.93 -0.40 0.59 16 30 H 0.10 2.05 6.83 -51.93 -0.35 1.70 16 31 H 0.04 0.72 6.81 -51.93 -0.35 0.37 16 32 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 33 H 0.02 0.43 7.82 -51.93 -0.41 0.03 16 34 H 0.34 7.72 8.33 45.56 0.38 8.10 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.05 0.59 6.70 -51.93 -0.35 0.25 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.88 6.82 -51.93 -0.35 0.52 16 LS Contribution 291.05 15.07 4.39 4.39 Total: -1.00 -29.23 291.05 -7.74 -36.97 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.82 Total: 5.62 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -0.56 Total: -13.44 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.41 Total: -35.51 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.32 Total: -14.28 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.23 -7.74 -36.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653354418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.948 kcal (2) G-P(sol) polarization free energy of solvation -29.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds