Wall clock time and date at job start Sun Mar 29 2020 21:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 110.29125 * 305.70493 * 3 2 1 5 5 C 1.54260 * 110.32515 * 67.82849 * 3 2 1 6 6 C 1.54378 * 105.06498 * 118.89665 * 5 3 2 7 7 N 1.48562 * 104.59255 * 23.85509 * 6 5 3 8 8 C 1.46897 * 111.00067 * 200.96074 * 7 6 5 9 9 C 1.53005 * 109.47282 * 290.12691 * 8 7 6 10 10 H 1.08995 * 109.46718 * 59.99817 * 9 8 7 11 11 O 1.42905 * 109.46834 * 300.00006 * 9 8 7 12 12 C 1.50698 * 109.47288 * 180.02562 * 9 8 7 13 13 H 1.08002 * 119.99846 * 359.97438 * 12 9 8 14 14 C 1.37869 * 119.99789 * 179.97438 * 12 9 8 15 15 N 1.31511 * 120.00343 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 119.99743 * 179.97438 * 14 12 9 17 17 H 1.48498 * 109.47093 * 90.00041 * 16 14 12 18 18 H 1.48497 * 109.46975 * 209.99828 * 16 14 12 19 19 H 1.48498 * 109.47219 * 329.99811 * 16 14 12 20 20 C 1.48728 * 104.28667 * 320.57598 * 7 6 5 21 21 H 1.09005 * 110.38378 * 280.63975 * 20 7 6 22 22 C 1.52996 * 110.50706 * 158.14758 * 20 7 6 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 1.09000 * 110.32906 * 237.79505 * 5 3 2 29 29 H 1.09006 * 110.32187 * 359.97438 * 5 3 2 30 30 H 1.09000 * 110.40988 * 142.63267 * 6 5 3 31 31 H 1.09000 * 110.41320 * 265.08148 * 6 5 3 32 32 H 1.09003 * 109.47383 * 50.12528 * 8 7 6 33 33 H 1.09003 * 109.47438 * 170.12588 * 8 7 6 34 34 H 0.96696 * 114.00045 * 300.00222 * 11 9 8 35 35 H 0.97000 * 120.00001 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.47246 * 304.86327 * 22 20 7 37 37 H 1.09004 * 109.47398 * 64.86188 * 22 20 7 38 38 H 1.08998 * 109.46981 * 184.85819 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6035 1.9977 -0.8302 5 6 1.7040 2.1296 1.3396 6 6 3.0703 2.5107 1.9489 7 7 3.9882 2.5985 0.7840 8 6 5.3886 2.4613 1.2057 9 6 5.8097 3.7062 1.9892 10 1 5.1744 3.8143 2.8683 11 8 5.6734 4.8607 1.1581 12 6 7.2465 3.5657 2.4213 13 1 7.8036 2.6771 2.1633 14 6 7.8499 4.5715 3.1459 15 7 7.1718 5.6537 3.4597 16 14 9.6308 4.3970 3.6822 17 1 10.5206 4.9577 2.6338 18 1 9.8392 5.1340 4.9544 19 1 9.9484 2.9605 3.8846 20 6 3.5810 1.4663 -0.0903 21 1 3.9981 0.5304 0.2816 22 6 4.0273 1.7153 -1.5324 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.1041 3.0230 1.1668 29 1 1.1752 1.4393 1.9970 30 1 3.0054 3.4739 2.4551 31 1 3.4069 1.7385 2.6406 32 1 5.4926 1.5807 1.8397 33 1 6.0239 2.3531 0.3266 34 1 6.2117 4.8332 0.3553 35 1 7.5962 6.3612 3.9698 36 1 3.6370 2.6743 -1.8731 37 1 5.1162 1.7292 -1.5785 38 1 3.6466 0.9198 -2.1729 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653354421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:47 Heat of formation + Delta-G solvation = -66.743349 kcal Electronic energy + Delta-G solvation = -16552.641918 eV Core-core repulsion = 14008.178503 eV Total energy + Delta-G solvation = -2544.463415 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.16080 -35.78589 -33.78145 -32.03114 -31.08296 -30.20419 -27.33050 -25.48968 -24.18548 -22.58100 -21.07484 -19.76396 -19.22203 -16.90023 -15.58700 -15.02974 -14.61196 -14.47340 -14.11996 -13.81895 -13.63954 -13.38359 -12.82353 -12.57098 -12.39519 -11.84856 -11.62368 -11.48054 -11.27071 -11.11085 -10.97650 -10.86899 -10.68480 -10.44517 -10.31383 -10.21251 -10.16946 -9.97171 -8.92948 -8.53820 -8.03973 -7.70050 -5.96493 -4.14933 3.29472 3.36306 3.38852 4.36492 4.53664 4.76439 4.87826 5.06699 5.27013 5.31016 5.39570 5.46988 5.54756 5.66688 5.78503 5.82305 5.91525 5.95144 5.97958 6.04233 6.14707 6.20564 6.25662 6.30775 6.38152 6.48383 6.53313 6.57712 6.69018 6.88906 7.46234 7.69642 7.81403 7.92202 8.25424 8.89292 9.51115 9.68004 11.07627 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.050715 B = 0.005856 C = 0.005721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.967416 B = 4780.010950 C = 4892.851100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.087 4.087 4 H 0.076 0.924 5 C -0.119 4.119 6 C 0.036 3.964 7 N -0.493 5.493 8 C 0.021 3.979 9 C 0.240 3.760 10 H 0.052 0.948 11 O -0.554 6.554 12 C -0.574 4.574 13 H 0.053 0.947 14 C 0.080 3.920 15 N -0.859 5.859 16 Si 0.888 3.112 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.057 3.943 21 H 0.043 0.957 22 C -0.132 4.132 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.036 0.964 32 H 0.026 0.974 33 H 0.062 0.938 34 H 0.342 0.658 35 H 0.260 0.740 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.093 -9.593 -6.642 15.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.106 4.106 4 H 0.095 0.905 5 C -0.157 4.157 6 C -0.092 4.092 7 N -0.217 5.217 8 C -0.107 4.107 9 C 0.181 3.819 10 H 0.070 0.930 11 O -0.355 6.355 12 C -0.613 4.613 13 H 0.072 0.928 14 C -0.126 4.126 15 N -0.494 5.494 16 Si 0.715 3.285 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.052 4.052 21 H 0.061 0.939 22 C -0.190 4.190 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.185 0.815 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.546 -8.717 -6.327 15.075 hybrid contribution 1.642 -1.126 0.440 2.039 sum -8.904 -9.844 -5.888 14.521 Atomic orbital electron populations 1.21786 0.95960 1.01141 1.01931 1.21600 0.95718 0.96403 1.01682 1.21967 0.94939 0.95373 0.98320 0.90544 1.22395 0.97365 0.99980 0.95958 1.23040 0.91833 1.01082 0.93235 1.65447 1.03497 1.39284 1.13455 1.23237 0.87478 1.00730 0.99292 1.19257 0.94435 0.79930 0.88242 0.93023 1.86556 1.68841 1.44225 1.35903 1.21678 0.98078 1.04398 1.37138 0.92829 1.25015 0.97674 0.95050 0.94844 1.70085 1.36109 1.06676 1.36578 0.86693 0.85458 0.78155 0.78172 1.20509 1.21121 1.19921 1.22722 0.94100 0.93400 0.94986 0.93924 1.21665 1.01184 1.01449 0.94702 0.92833 0.92545 0.93150 0.92227 0.92177 0.91420 0.91818 0.89900 0.94582 0.95620 0.91913 0.81541 0.93034 0.91859 0.92824 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.75 37.16 0.36 -1.04 16 2 C -0.12 -1.26 5.10 -26.74 -0.14 -1.40 16 3 C -0.09 -1.13 2.63 -89.24 -0.23 -1.37 16 4 H 0.08 0.99 7.86 -51.93 -0.41 0.58 16 5 C -0.12 -1.65 6.15 -25.35 -0.16 -1.81 16 6 C 0.04 0.64 5.74 -2.18 -0.01 0.63 16 7 N -0.49 -9.31 4.92 -222.00 -1.09 -10.40 16 8 C 0.02 0.44 4.36 -3.82 -0.02 0.43 16 9 C 0.24 6.23 2.83 -27.88 -0.08 6.15 16 10 H 0.05 1.48 7.25 -51.93 -0.38 1.10 16 11 O -0.55 -14.87 12.59 -35.23 -0.44 -15.31 16 12 C -0.57 -16.08 8.76 -34.44 -0.30 -16.38 16 13 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 14 C 0.08 2.28 5.40 -17.82 -0.10 2.19 16 15 N -0.86 -25.83 12.84 55.43 0.71 -25.12 16 16 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 20 C 0.06 0.87 2.44 -65.98 -0.16 0.71 16 21 H 0.04 0.67 7.72 -51.93 -0.40 0.27 16 22 C -0.13 -1.85 9.31 37.16 0.35 -1.50 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.53 7.02 -51.93 -0.36 0.16 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.78 6.93 -51.93 -0.36 0.42 16 30 H 0.08 1.61 7.76 -51.93 -0.40 1.21 16 31 H 0.04 0.64 7.82 -51.93 -0.41 0.23 16 32 H 0.03 0.55 7.88 -51.93 -0.41 0.14 16 33 H 0.06 1.32 7.35 -51.93 -0.38 0.94 16 34 H 0.34 8.29 9.04 45.56 0.41 8.70 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.78 7.46 -51.93 -0.39 0.39 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 300.83 15.07 4.53 4.53 Total: -1.00 -30.41 300.83 -7.78 -38.19 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.99 Total: 5.12 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -0.49 Total: -13.40 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: -0.38 Total: -35.52 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.44 Total: -15.31 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.41 -7.78 -38.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653354421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.553 kcal (2) G-P(sol) polarization free energy of solvation -30.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds