Wall clock time and date at job start Sun Mar 29 2020 21:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 110.29125 * 305.70493 * 3 2 1 5 5 C 1.54260 * 110.32515 * 67.82849 * 3 2 1 6 6 C 1.54378 * 105.06498 * 118.89665 * 5 3 2 7 7 N 1.48562 * 104.59255 * 23.85509 * 6 5 3 8 8 C 1.46897 * 111.00067 * 200.96074 * 7 6 5 9 9 C 1.53005 * 109.47282 * 290.12691 * 8 7 6 10 10 H 1.08995 * 109.46718 * 59.99817 * 9 8 7 11 11 O 1.42905 * 109.46834 * 300.00006 * 9 8 7 12 12 C 1.50698 * 109.47288 * 180.02562 * 9 8 7 13 13 H 1.08002 * 119.99846 * 359.97438 * 12 9 8 14 14 C 1.37869 * 119.99789 * 179.97438 * 12 9 8 15 15 N 1.31511 * 120.00343 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 119.99743 * 179.97438 * 14 12 9 17 17 H 1.48498 * 109.47093 * 90.00041 * 16 14 12 18 18 H 1.48497 * 109.46975 * 209.99828 * 16 14 12 19 19 H 1.48498 * 109.47219 * 329.99811 * 16 14 12 20 20 C 1.48728 * 104.28667 * 320.57598 * 7 6 5 21 21 H 1.09005 * 110.38378 * 280.63975 * 20 7 6 22 22 C 1.52996 * 110.50706 * 158.14758 * 20 7 6 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 1.09000 * 110.32906 * 237.79505 * 5 3 2 29 29 H 1.09006 * 110.32187 * 359.97438 * 5 3 2 30 30 H 1.09000 * 110.40988 * 142.63267 * 6 5 3 31 31 H 1.09000 * 110.41320 * 265.08148 * 6 5 3 32 32 H 1.09003 * 109.47383 * 50.12528 * 8 7 6 33 33 H 1.09003 * 109.47438 * 170.12588 * 8 7 6 34 34 H 0.96696 * 114.00045 * 300.00222 * 11 9 8 35 35 H 0.97000 * 120.00001 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.47246 * 304.86327 * 22 20 7 37 37 H 1.09004 * 109.47398 * 64.86188 * 22 20 7 38 38 H 1.08998 * 109.46981 * 184.85819 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6035 1.9977 -0.8302 5 6 1.7040 2.1296 1.3396 6 6 3.0703 2.5107 1.9489 7 7 3.9882 2.5985 0.7840 8 6 5.3886 2.4613 1.2057 9 6 5.8097 3.7062 1.9892 10 1 5.1744 3.8143 2.8683 11 8 5.6734 4.8607 1.1581 12 6 7.2465 3.5657 2.4213 13 1 7.8036 2.6771 2.1633 14 6 7.8499 4.5715 3.1459 15 7 7.1718 5.6537 3.4597 16 14 9.6308 4.3970 3.6822 17 1 10.5206 4.9577 2.6338 18 1 9.8392 5.1340 4.9544 19 1 9.9484 2.9605 3.8846 20 6 3.5810 1.4663 -0.0903 21 1 3.9981 0.5304 0.2816 22 6 4.0273 1.7153 -1.5324 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.1041 3.0230 1.1668 29 1 1.1752 1.4393 1.9970 30 1 3.0054 3.4739 2.4551 31 1 3.4069 1.7385 2.6406 32 1 5.4926 1.5807 1.8397 33 1 6.0239 2.3531 0.3266 34 1 6.2117 4.8332 0.3553 35 1 7.5962 6.3612 3.9698 36 1 3.6370 2.6743 -1.8731 37 1 5.1162 1.7292 -1.5785 38 1 3.6466 0.9198 -2.1729 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653354421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:46 Heat of formation + Delta-G solvation = -88.433560 kcal Electronic energy + Delta-G solvation = -16553.582477 eV Core-core repulsion = 14008.178503 eV Total energy + Delta-G solvation = -2545.403974 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.47773 -37.67913 -35.08090 -34.22268 -32.30186 -31.60998 -29.13424 -26.61824 -26.02818 -23.70812 -22.73866 -21.15003 -20.49334 -19.00852 -16.83684 -16.66540 -16.48847 -16.14939 -15.67580 -15.39297 -14.96430 -14.59999 -14.31324 -13.87226 -13.76433 -13.23110 -12.98236 -12.92789 -12.81421 -12.60038 -12.55848 -12.25095 -12.14019 -12.01972 -11.91395 -11.41021 -11.30664 -11.26143 -10.99153 -10.71715 -10.08333 -9.25721 -8.14121 -6.41087 1.39477 1.40143 1.51137 2.37624 3.10195 3.14268 3.64387 3.77185 3.98752 4.24054 4.30490 4.34530 4.39998 4.45101 4.50324 4.57402 4.63990 4.72319 4.81690 4.88973 4.98083 5.00555 5.03097 5.06105 5.17626 5.24985 5.30250 5.37013 5.48607 5.53704 5.58937 5.73653 6.00188 6.14218 6.24385 6.72745 7.33470 7.60821 8.90532 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.050715 B = 0.005856 C = 0.005721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.967416 B = 4780.010950 C = 4892.851100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.079 4.079 4 H 0.083 0.917 5 C -0.110 4.110 6 C 0.032 3.968 7 N -0.509 5.509 8 C 0.040 3.960 9 C 0.241 3.759 10 H 0.015 0.985 11 O -0.570 6.570 12 C -0.591 4.591 13 H 0.058 0.942 14 C 0.026 3.974 15 N -0.900 5.900 16 Si 0.962 3.038 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.265 1.265 20 C 0.053 3.947 21 H 0.042 0.958 22 C -0.128 4.128 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.031 0.969 32 H 0.021 0.979 33 H 0.067 0.933 34 H 0.352 0.648 35 H 0.262 0.738 36 H 0.056 0.944 37 H 0.042 0.958 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.303 -11.177 -7.660 17.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C -0.098 4.098 4 H 0.101 0.899 5 C -0.148 4.148 6 C -0.096 4.096 7 N -0.233 5.233 8 C -0.088 4.088 9 C 0.183 3.817 10 H 0.033 0.967 11 O -0.373 6.373 12 C -0.629 4.629 13 H 0.076 0.924 14 C -0.176 4.176 15 N -0.537 5.537 16 Si 0.786 3.214 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.189 1.189 20 C -0.055 4.055 21 H 0.060 0.940 22 C -0.186 4.186 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.040 0.960 33 H 0.086 0.914 34 H 0.196 0.804 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.762 -10.319 -7.360 16.628 hybrid contribution 1.665 -0.620 0.746 1.927 sum -9.097 -10.939 -6.614 15.689 Atomic orbital electron populations 1.21768 0.94605 1.02081 1.02147 1.21566 0.96822 0.94479 1.02049 1.21953 0.93063 0.97086 0.97738 0.89902 1.22366 0.95028 1.00714 0.96695 1.23030 0.94050 0.99423 0.93111 1.65377 1.02088 1.41608 1.14239 1.22808 0.89505 0.97929 0.98573 1.19094 0.93233 0.81567 0.87824 0.96743 1.86498 1.69202 1.45066 1.36505 1.22062 0.99090 1.04579 1.37189 0.92388 1.25914 1.02436 0.94549 0.94724 1.70231 1.38273 1.07656 1.37559 0.85530 0.79568 0.78506 0.77793 1.19624 1.20768 1.18937 1.22874 0.95871 0.91866 0.94873 0.93969 1.21653 1.00579 1.02214 0.94144 0.92289 0.92697 0.91894 0.92635 0.91100 0.91180 0.89815 0.92894 0.95081 0.96036 0.91438 0.80439 0.92952 0.92538 0.93849 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.75 71.98 0.70 -1.59 16 2 C -0.11 -2.08 5.10 30.59 0.16 -1.92 16 3 C -0.08 -1.89 2.63 -9.90 -0.03 -1.92 16 4 H 0.08 1.91 7.86 -2.39 -0.02 1.89 16 5 C -0.11 -2.92 6.15 31.49 0.19 -2.73 16 6 C 0.03 1.15 5.74 86.45 0.50 1.65 16 7 N -0.51 -19.31 4.92 -856.27 -4.21 -23.52 16 8 C 0.04 1.76 4.36 86.31 0.38 2.14 16 9 C 0.24 12.93 2.83 29.85 0.08 13.01 16 10 H 0.01 0.89 7.25 -2.39 -0.02 0.87 16 11 O -0.57 -31.46 12.59 -148.98 -1.88 -33.33 16 12 C -0.59 -33.52 8.76 25.60 0.22 -33.29 16 13 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 14 C 0.03 1.50 5.40 84.65 0.46 1.96 16 15 N -0.90 -55.27 12.84 21.44 0.28 -55.00 16 16 Si 0.96 44.05 29.54 68.60 2.03 46.08 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 20 C 0.05 1.56 2.44 45.03 0.11 1.67 16 21 H 0.04 1.26 7.72 -2.38 -0.02 1.24 16 22 C -0.13 -3.34 9.31 71.98 0.67 -2.67 16 23 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.05 0.86 7.02 -2.39 -0.02 0.84 16 25 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 26 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.08 1.89 6.93 -2.38 -0.02 1.87 16 30 H 0.05 2.18 7.76 -2.39 -0.02 2.16 16 31 H 0.03 1.12 7.82 -2.39 -0.02 1.11 16 32 H 0.02 0.94 7.88 -2.39 -0.02 0.92 16 33 H 0.07 2.83 7.35 -2.39 -0.02 2.82 16 34 H 0.35 17.41 9.04 -74.06 -0.67 16.74 16 35 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.04 1.20 7.46 -2.38 -0.02 1.18 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -65.72 300.83 0.00 -65.73 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.34 Total: 23.74 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: 3.44 Total: -23.69 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -3.94 Total: -78.52 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -1.88 Total: -33.33 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -65.72 0.00 -65.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653354421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.708 kcal (2) G-P(sol) polarization free energy of solvation -65.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds