Wall clock time and date at job start Sun Mar 29 2020 22:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.46747 * 2 1 4 4 C 1.53001 * 109.46887 * 119.99986 * 2 1 3 5 5 C 1.50706 * 109.47228 * 294.99771 * 4 2 1 6 6 H 1.07998 * 119.99523 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99867 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99869 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99917 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47093 * 90.00634 * 9 7 5 11 11 H 1.48498 * 109.47120 * 210.00623 * 9 7 5 12 12 H 1.48501 * 109.47258 * 330.00367 * 9 7 5 13 13 C 1.52998 * 109.47007 * 240.00047 * 2 1 3 14 14 N 1.46894 * 109.47201 * 65.00021 * 13 2 1 15 15 C 1.48568 * 111.00010 * 54.57811 * 14 13 2 16 16 C 1.54384 * 104.59342 * 159.03672 * 15 14 13 17 17 C 1.54255 * 105.06062 * 336.15216 * 16 15 14 18 18 H 1.09001 * 110.32705 * 241.09829 * 17 16 15 19 19 O 1.42904 * 110.32436 * 118.89225 * 17 16 15 20 20 C 1.48559 * 111.00126 * 169.99811 * 14 13 2 21 21 H 1.09002 * 110.41004 * 319.74006 * 20 14 13 22 22 C 1.53007 * 110.41103 * 82.06358 * 20 14 13 23 23 H 1.09003 * 109.47243 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47007 * 300.00200 * 1 2 3 25 25 H 1.08997 * 109.47440 * 59.99793 * 1 2 3 26 26 H 1.09000 * 109.47223 * 54.99998 * 4 2 1 27 27 H 1.08996 * 109.47188 * 174.99889 * 4 2 1 28 28 H 0.97003 * 119.99733 * 179.97438 * 8 7 5 29 29 H 1.09006 * 109.47092 * 304.99880 * 13 2 1 30 30 H 1.08993 * 109.46903 * 185.00344 * 13 2 1 31 31 H 1.08993 * 110.41438 * 277.81856 * 15 14 13 32 32 H 1.09006 * 110.40833 * 40.26414 * 15 14 13 33 33 H 1.09004 * 110.31570 * 95.04560 * 16 15 14 34 34 H 1.08998 * 110.32341 * 217.25366 * 16 15 14 35 35 H 0.96706 * 113.99881 * 64.36107 * 19 17 16 36 36 H 1.09003 * 109.47098 * 58.35230 * 22 20 14 37 37 H 1.08995 * 109.47051 * 178.35302 * 22 20 14 38 38 H 1.08997 * 109.46789 * 298.35603 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4767 6 1 1.0800 0.9742 2.3757 7 6 1.9923 -0.4022 3.7284 8 7 2.6754 -1.5193 3.8512 9 14 1.4976 0.5621 5.2497 10 1 0.1702 0.0937 5.7228 11 1 2.5065 0.3519 6.3189 12 1 1.4227 2.0074 4.9171 13 6 2.0400 -0.7212 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1169 1.4455 -2.3576 16 6 2.1351 1.9412 -3.8196 17 6 2.2733 0.6644 -4.6741 18 1 3.1925 0.6979 -5.2590 19 8 1.1415 0.5180 -5.5342 20 6 2.3270 -0.4954 -3.6566 21 1 3.3612 -0.7559 -3.4314 22 6 1.5755 -1.7151 -4.1938 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.6053 -1.7198 1.2952 27 1 3.1262 -0.7995 1.2057 28 1 2.9227 -1.8423 4.7318 29 1 1.6054 -1.7198 -1.2951 30 1 3.1262 -0.7995 -1.2055 31 1 1.4223 2.0392 -1.7635 32 1 3.1183 1.4887 -1.9291 33 1 1.2040 2.4563 -4.0562 34 1 2.9865 2.6014 -3.9849 35 1 1.0564 1.2190 -6.1950 36 1 0.5477 -1.4356 -4.4257 37 1 2.0667 -2.0755 -5.0976 38 1 1.5766 -2.5031 -3.4408 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001659800352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:38 Heat of formation + Delta-G solvation = -64.418622 kcal Electronic energy + Delta-G solvation = -16440.466662 eV Core-core repulsion = 13896.104054 eV Total energy + Delta-G solvation = -2544.362608 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.50141 -36.45980 -34.52634 -32.25293 -31.33040 -29.80283 -26.73601 -25.44806 -24.95249 -22.80762 -21.22882 -19.90857 -18.57869 -17.48492 -16.39578 -15.49548 -14.83040 -14.56970 -14.50047 -14.30795 -13.52154 -13.24057 -12.72143 -12.52272 -12.16269 -11.96896 -11.70582 -11.34972 -11.27946 -11.02815 -10.88210 -10.80822 -10.71092 -10.54017 -10.26017 -10.12886 -10.04666 -9.59807 -9.11353 -8.91775 -8.30998 -8.10913 -5.95860 -3.96897 3.34164 3.40308 3.43488 4.12769 4.23756 4.49863 4.63592 4.71040 5.07223 5.26318 5.39946 5.52038 5.55497 5.62587 5.66677 5.76797 5.89346 5.95112 6.04805 6.12510 6.18568 6.20205 6.48392 6.53407 6.57849 6.71808 7.05884 7.09905 7.22158 7.29226 7.45732 7.61604 7.71416 7.87585 8.04511 8.48615 9.09401 9.66358 11.15731 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.051820 B = 0.005458 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.206532 B = 5129.101810 C = 5331.545521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.083 4.083 3 H 0.055 0.945 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.049 3.951 14 N -0.498 5.498 15 C 0.035 3.965 16 C -0.158 4.158 17 C 0.105 3.895 18 H 0.057 0.943 19 O -0.552 6.552 20 C 0.062 3.938 21 H 0.056 0.944 22 C -0.123 4.123 23 H 0.041 0.959 24 H 0.053 0.947 25 H 0.041 0.959 26 H 0.016 0.984 27 H 0.012 0.988 28 H 0.259 0.741 29 H 0.072 0.928 30 H 0.029 0.971 31 H 0.085 0.915 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.371 0.629 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.125 4.676 -16.935 17.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.102 4.102 3 H 0.074 0.926 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.078 4.078 14 N -0.222 5.222 15 C -0.093 4.093 16 C -0.196 4.196 17 C 0.045 3.955 18 H 0.075 0.925 19 O -0.357 6.357 20 C -0.047 4.047 21 H 0.074 0.926 22 C -0.181 4.181 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.035 0.965 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.047 0.953 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.217 0.783 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.719 3.972 -16.459 16.947 hybrid contribution 0.906 1.009 0.811 1.580 sum 0.188 4.981 -15.648 16.423 Atomic orbital electron populations 1.21596 0.95687 1.00708 1.00067 1.21262 0.96039 0.99004 0.93916 0.92618 1.19128 0.95853 0.95615 0.90449 1.21231 1.34513 1.08268 0.90984 0.92615 1.25017 0.95341 0.95104 0.99072 1.69970 1.39122 1.21274 1.23333 0.86632 0.78237 0.80409 0.82958 1.20702 1.21329 1.19942 1.22504 0.97527 0.97984 0.89800 1.65467 1.52988 1.01533 1.02241 1.23013 0.99445 0.91260 0.95553 1.23099 1.02416 0.97700 0.96403 1.22494 0.87946 0.94512 0.90541 0.92483 1.86607 1.47966 1.52289 1.48796 1.22705 0.96635 0.94730 0.90625 0.92590 1.21421 1.01735 0.95537 0.99391 0.94034 0.92779 0.94018 0.96538 0.96993 0.93119 0.90980 0.95272 0.89673 0.93747 0.90258 0.91312 0.78290 0.90961 0.93063 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.49 8.89 37.16 0.33 -2.16 16 2 C -0.08 -1.75 2.07 -90.62 -0.19 -1.94 16 3 H 0.06 1.18 6.56 -51.93 -0.34 0.83 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.50 8.41 -34.44 -0.29 -14.79 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.05 0.90 4.29 -3.83 -0.02 0.89 16 14 N -0.50 -7.91 4.62 -222.13 -1.03 -8.94 16 15 C 0.04 0.51 5.10 -2.18 -0.01 0.50 16 16 C -0.16 -1.76 6.81 -25.35 -0.17 -1.93 16 17 C 0.10 1.18 4.27 -25.35 -0.11 1.07 16 18 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 19 O -0.55 -6.13 11.62 -35.23 -0.41 -6.54 16 20 C 0.06 0.85 2.86 -66.07 -0.19 0.66 16 21 H 0.06 0.76 7.82 -51.93 -0.41 0.35 16 22 C -0.12 -1.65 8.89 37.16 0.33 -1.32 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.05 1.15 6.95 -51.93 -0.36 0.79 16 25 H 0.04 0.77 7.75 -51.93 -0.40 0.36 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.07 1.34 7.72 -51.93 -0.40 0.94 16 30 H 0.03 0.54 7.88 -51.93 -0.41 0.13 16 31 H 0.08 1.28 7.56 -51.93 -0.39 0.89 16 32 H 0.04 0.65 8.00 -51.93 -0.42 0.24 16 33 H 0.08 0.86 7.98 -51.93 -0.41 0.44 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.37 2.43 9.12 45.56 0.42 2.84 16 36 H 0.07 1.06 7.34 -51.93 -0.38 0.68 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.70 7.68 -51.93 -0.40 0.30 16 LS Contribution 298.46 15.07 4.50 4.50 Total: -1.00 -31.15 298.46 -7.71 -38.86 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.95 Total: -1.30 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -0.53 Total: -16.94 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.29 Total: -35.45 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.41 Total: -6.54 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.15 -7.71 -38.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659800352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.559 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds