Wall clock time and date at job start Sun Mar 29 2020 22:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.46747 * 2 1 4 4 C 1.53001 * 109.46887 * 119.99986 * 2 1 3 5 5 C 1.50706 * 109.47228 * 294.99771 * 4 2 1 6 6 H 1.07998 * 119.99523 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99867 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99869 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99917 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47093 * 90.00634 * 9 7 5 11 11 H 1.48498 * 109.47120 * 210.00623 * 9 7 5 12 12 H 1.48501 * 109.47258 * 330.00367 * 9 7 5 13 13 C 1.52998 * 109.47007 * 240.00047 * 2 1 3 14 14 N 1.46894 * 109.47201 * 65.00021 * 13 2 1 15 15 C 1.48568 * 111.00010 * 54.57811 * 14 13 2 16 16 C 1.54384 * 104.59342 * 159.03672 * 15 14 13 17 17 C 1.54255 * 105.06062 * 336.15216 * 16 15 14 18 18 H 1.09001 * 110.32705 * 241.09829 * 17 16 15 19 19 O 1.42904 * 110.32436 * 118.89225 * 17 16 15 20 20 C 1.48559 * 111.00126 * 169.99811 * 14 13 2 21 21 H 1.09002 * 110.41004 * 319.74006 * 20 14 13 22 22 C 1.53007 * 110.41103 * 82.06358 * 20 14 13 23 23 H 1.09003 * 109.47243 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47007 * 300.00200 * 1 2 3 25 25 H 1.08997 * 109.47440 * 59.99793 * 1 2 3 26 26 H 1.09000 * 109.47223 * 54.99998 * 4 2 1 27 27 H 1.08996 * 109.47188 * 174.99889 * 4 2 1 28 28 H 0.97003 * 119.99733 * 179.97438 * 8 7 5 29 29 H 1.09006 * 109.47092 * 304.99880 * 13 2 1 30 30 H 1.08993 * 109.46903 * 185.00344 * 13 2 1 31 31 H 1.08993 * 110.41438 * 277.81856 * 15 14 13 32 32 H 1.09006 * 110.40833 * 40.26414 * 15 14 13 33 33 H 1.09004 * 110.31570 * 95.04560 * 16 15 14 34 34 H 1.08998 * 110.32341 * 217.25366 * 16 15 14 35 35 H 0.96706 * 113.99881 * 64.36107 * 19 17 16 36 36 H 1.09003 * 109.47098 * 58.35230 * 22 20 14 37 37 H 1.08995 * 109.47051 * 178.35302 * 22 20 14 38 38 H 1.08997 * 109.46789 * 298.35603 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4767 6 1 1.0800 0.9742 2.3757 7 6 1.9923 -0.4022 3.7284 8 7 2.6754 -1.5193 3.8512 9 14 1.4976 0.5621 5.2497 10 1 0.1702 0.0937 5.7228 11 1 2.5065 0.3519 6.3189 12 1 1.4227 2.0074 4.9171 13 6 2.0400 -0.7212 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1169 1.4455 -2.3576 16 6 2.1351 1.9412 -3.8196 17 6 2.2733 0.6644 -4.6741 18 1 3.1925 0.6979 -5.2590 19 8 1.1415 0.5180 -5.5342 20 6 2.3270 -0.4954 -3.6566 21 1 3.3612 -0.7559 -3.4314 22 6 1.5755 -1.7151 -4.1938 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.6053 -1.7198 1.2952 27 1 3.1262 -0.7995 1.2057 28 1 2.9227 -1.8423 4.7318 29 1 1.6054 -1.7198 -1.2951 30 1 3.1262 -0.7995 -1.2055 31 1 1.4223 2.0392 -1.7635 32 1 3.1183 1.4887 -1.9291 33 1 1.2040 2.4563 -4.0562 34 1 2.9865 2.6014 -3.9849 35 1 1.0564 1.2190 -6.1950 36 1 0.5477 -1.4356 -4.4257 37 1 2.0667 -2.0755 -5.0976 38 1 1.5766 -2.5031 -3.4408 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001659800352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:38 Heat of formation + Delta-G solvation = -86.568965 kcal Electronic energy + Delta-G solvation = -16441.427173 eV Core-core repulsion = 13896.104054 eV Total energy + Delta-G solvation = -2545.323119 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.60509 -37.74564 -36.01040 -34.24614 -32.36284 -31.16131 -28.72237 -26.80775 -26.20112 -24.63469 -22.47421 -20.98064 -20.21407 -18.62446 -18.24481 -16.82294 -16.44633 -16.10027 -15.67259 -15.46454 -14.94155 -14.50430 -14.44992 -13.86706 -13.75130 -13.37766 -13.12936 -12.87327 -12.72124 -12.68170 -12.39777 -12.29982 -12.18059 -11.91707 -11.87208 -11.50321 -11.40029 -11.13140 -10.88726 -10.79245 -10.54194 -9.37507 -8.18233 -6.27696 1.39638 1.40918 1.51722 2.41406 3.02320 3.15170 3.35398 3.64715 3.75128 4.11934 4.19724 4.23375 4.28542 4.47845 4.50779 4.64973 4.71025 4.75700 4.82559 4.88514 4.94757 4.98807 5.00460 5.11682 5.22225 5.26657 5.41817 5.44864 5.49606 5.53501 5.77532 5.86656 6.02684 6.08191 6.30092 6.87763 7.02981 7.40649 8.94003 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.051820 B = 0.005458 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.206532 B = 5129.101810 C = 5331.545521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.073 4.073 3 H 0.056 0.944 4 C 0.033 3.967 5 C -0.529 4.529 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.263 1.263 13 C 0.062 3.938 14 N -0.506 5.506 15 C 0.028 3.972 16 C -0.147 4.147 17 C 0.111 3.889 18 H 0.084 0.916 19 O -0.568 6.568 20 C 0.051 3.949 21 H 0.058 0.942 22 C -0.117 4.117 23 H 0.035 0.965 24 H 0.040 0.960 25 H 0.061 0.939 26 H -0.011 1.011 27 H -0.015 1.015 28 H 0.262 0.738 29 H 0.063 0.937 30 H 0.022 0.978 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.392 0.608 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.415 6.262 -18.113 19.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 H 0.074 0.926 4 C -0.005 4.005 5 C -0.567 4.567 6 H 0.079 0.921 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.787 3.213 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.187 1.187 13 C -0.066 4.066 14 N -0.230 5.230 15 C -0.100 4.100 16 C -0.185 4.185 17 C 0.052 3.948 18 H 0.101 0.899 19 O -0.376 6.376 20 C -0.057 4.057 21 H 0.075 0.925 22 C -0.175 4.175 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.007 0.993 27 H 0.004 0.996 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.241 0.759 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.018 5.579 -17.669 18.557 hybrid contribution 1.004 0.489 1.128 1.588 sum -0.014 6.069 -16.541 17.619 Atomic orbital electron populations 1.21476 0.94769 1.00396 1.00320 1.21056 0.96626 0.98493 0.92979 0.92559 1.19012 0.94021 0.94682 0.92742 1.21612 1.34464 1.08583 0.92019 0.92135 1.25955 0.95192 0.96098 1.02654 1.70107 1.40262 1.22983 1.24297 0.85492 0.78015 0.79274 0.78556 1.19898 1.20841 1.18716 1.22206 0.96799 0.97585 0.90016 1.65430 1.53576 1.02229 1.01792 1.23091 0.98645 0.90279 0.98020 1.23067 1.03852 0.97997 0.93616 1.22424 0.89161 0.92901 0.90334 0.89859 1.86557 1.47930 1.53663 1.49435 1.22867 0.96430 0.96023 0.90417 0.92452 1.21361 1.01143 0.95189 0.99788 0.94611 0.94098 0.91987 0.99274 0.99632 0.92917 0.91810 0.95983 0.90686 0.94446 0.89669 0.88914 0.75854 0.92236 0.91273 0.94190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.53 8.89 71.98 0.64 -3.89 16 2 C -0.07 -3.11 2.07 -10.79 -0.02 -3.13 16 3 H 0.06 2.39 6.56 -2.39 -0.02 2.38 16 4 C 0.03 1.79 4.45 29.85 0.13 1.92 16 5 C -0.53 -30.43 8.41 25.60 0.22 -30.22 16 6 H 0.06 3.35 7.06 -2.91 -0.02 3.33 16 7 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 8 N -0.94 -57.96 13.29 21.45 0.28 -57.68 16 9 Si 0.96 44.96 29.54 68.60 2.03 46.99 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 13 C 0.06 2.30 4.29 86.30 0.37 2.67 16 14 N -0.51 -15.64 4.62 -856.70 -3.96 -19.60 16 15 C 0.03 0.75 5.10 86.45 0.44 1.19 16 16 C -0.15 -2.83 6.81 31.49 0.21 -2.61 16 17 C 0.11 2.17 4.27 31.49 0.13 2.30 16 18 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 19 O -0.57 -10.87 11.62 -148.98 -1.73 -12.60 16 20 C 0.05 1.31 2.86 45.06 0.13 1.44 16 21 H 0.06 1.47 7.82 -2.39 -0.02 1.46 16 22 C -0.12 -3.00 8.89 71.98 0.64 -2.36 16 23 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.04 1.72 6.95 -2.39 -0.02 1.71 16 25 H 0.06 2.23 7.75 -2.39 -0.02 2.21 16 26 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 27 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 28 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 29 H 0.06 2.44 7.72 -2.38 -0.02 2.42 16 30 H 0.02 0.83 7.88 -2.39 -0.02 0.81 16 31 H 0.07 2.18 7.56 -2.39 -0.02 2.16 16 32 H 0.04 1.07 8.00 -2.38 -0.02 1.05 16 33 H 0.08 1.56 7.98 -2.39 -0.02 1.54 16 34 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.39 3.75 9.12 -74.05 -0.68 3.07 16 36 H 0.06 1.67 7.34 -2.39 -0.02 1.65 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.04 1.08 7.68 -2.39 -0.02 1.06 16 Total: -1.00 -67.19 298.46 0.31 -66.87 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.34 Total: 8.33 kcal Atomic # 6 Polarization: -35.67 SS G_CDS: 3.36 Total: -32.32 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: -3.68 Total: -77.28 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -1.73 Total: -12.60 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -67.19 0.31 -66.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659800352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.697 kcal (2) G-P(sol) polarization free energy of solvation -67.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds