Wall clock time and date at job start Sun Mar 29 2020 21:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47229 * 2 1 4 4 H 1.08992 * 109.49139 * 305.03363 * 3 2 1 5 5 C 1.53089 * 109.48191 * 184.99934 * 3 2 1 6 6 C 1.53176 * 109.16311 * 182.41209 * 5 3 2 7 7 H 1.09001 * 109.54706 * 176.93922 * 6 5 3 8 8 N 1.46897 * 109.54417 * 297.11362 * 6 5 3 9 9 C 1.46900 * 110.99946 * 273.63650 * 8 6 5 10 10 H 1.08997 * 109.47138 * 33.55853 * 9 8 6 11 11 C 1.53000 * 109.47493 * 273.55222 * 9 8 6 12 12 C 1.50705 * 109.46797 * 153.55530 * 9 8 6 13 13 H 1.07997 * 120.00074 * 5.22656 * 12 9 8 14 14 C 1.37878 * 119.99688 * 185.22416 * 12 9 8 15 15 N 1.31518 * 119.99642 * 196.57988 * 14 12 9 16 16 Si 1.86795 * 120.00418 * 16.58451 * 14 12 9 17 17 H 1.48491 * 109.47497 * 95.69351 * 16 14 12 18 18 H 1.48496 * 109.47247 * 215.69986 * 16 14 12 19 19 H 1.48505 * 109.46742 * 335.69862 * 16 14 12 20 20 C 1.53181 * 109.10925 * 57.02644 * 6 5 3 21 21 C 1.53272 * 109.06273 * 303.05973 * 20 6 5 22 22 O 1.42902 * 109.46496 * 57.55414 * 21 20 6 23 23 H 1.08997 * 109.47586 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47451 * 299.99790 * 1 2 3 25 25 H 1.09003 * 109.47304 * 59.99393 * 1 2 3 26 26 H 1.09002 * 109.47268 * 240.00627 * 2 1 3 27 27 H 1.09003 * 109.47304 * 120.00607 * 2 1 3 28 28 H 1.08999 * 109.52320 * 62.50951 * 5 3 2 29 29 H 1.08996 * 109.52351 * 302.31575 * 5 3 2 30 30 H 1.00900 * 110.99766 * 37.59539 * 8 6 5 31 31 H 1.09001 * 109.46387 * 62.70054 * 11 9 8 32 32 H 1.08991 * 109.47219 * 182.70220 * 11 9 8 33 33 H 1.09001 * 109.46897 * 302.71058 * 11 9 8 34 34 H 0.96999 * 119.99657 * 180.02562 * 15 14 12 35 35 H 1.08998 * 109.52290 * 62.88651 * 20 6 5 36 36 H 1.09000 * 109.52047 * 183.06880 * 20 6 5 37 37 H 1.09005 * 109.45738 * 297.55402 * 21 20 6 38 38 H 1.08999 * 109.45985 * 177.55592 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6051 1.9820 -0.8413 5 6 3.5657 1.4446 -0.1258 6 6 4.0733 2.8885 -0.0644 7 1 5.1627 2.8938 -0.0988 8 7 3.5420 3.6451 -1.2060 9 6 4.4038 3.4921 -2.3858 10 1 4.8405 2.4935 -2.3897 11 6 5.5204 4.5371 -2.3407 12 6 3.5839 3.6867 -3.6352 13 1 2.5487 3.9852 -3.5608 14 6 4.1555 3.4837 -4.8734 15 7 3.5704 3.9547 -5.9530 16 14 5.7608 2.5395 -5.0176 17 1 5.4719 1.1162 -5.3272 18 1 6.5838 3.1256 -6.1058 19 1 6.5029 2.6260 -3.7342 20 6 3.5986 3.5318 1.2423 21 6 2.0700 3.4478 1.3152 22 8 1.6631 2.0811 1.2217 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.8533 0.9975 -1.0773 29 1 3.9995 0.8709 0.6932 30 1 2.5936 3.3694 -1.4126 31 1 6.1422 4.3665 -1.4619 32 1 6.1313 4.4550 -3.2396 33 1 5.0831 5.5341 -2.2883 34 1 3.9724 3.8115 -6.8241 35 1 4.0332 3.0002 2.0888 36 1 3.9099 4.5761 1.2681 37 1 1.6355 4.0136 0.4910 38 1 1.7282 3.8648 2.2625 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663171028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:08 Heat of formation + Delta-G solvation = -61.892480 kcal Electronic energy + Delta-G solvation = -16923.109364 eV Core-core repulsion = 14378.856298 eV Total energy + Delta-G solvation = -2544.253066 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.59581 -36.00219 -33.81346 -33.13750 -31.30498 -29.57521 -27.84012 -25.27682 -24.38609 -23.38531 -21.22831 -20.33450 -18.70188 -16.87061 -16.18869 -15.89591 -15.10783 -14.54814 -14.29594 -13.93764 -13.57803 -13.36420 -12.95071 -12.76910 -12.52001 -12.03149 -11.78349 -11.60641 -11.45382 -11.04682 -11.01979 -10.91406 -10.80316 -10.56299 -10.39791 -10.23081 -9.91986 -9.56218 -9.19488 -8.99260 -8.46915 -7.48792 -6.15867 -4.10092 3.23542 3.33815 3.36572 4.02040 4.37596 4.82746 5.06413 5.09199 5.18108 5.22957 5.30974 5.33652 5.51982 5.56104 5.71180 5.73755 5.88907 6.01077 6.06847 6.13831 6.15665 6.24874 6.29451 6.36931 6.44697 6.46886 6.51124 6.69567 6.82289 6.92144 7.41699 7.51809 7.63652 7.94054 8.32004 8.60258 8.93468 9.50783 10.97185 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027937 B = 0.008457 C = 0.007465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.018474 B = 3310.262826 C = 3749.799698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C 0.091 3.909 4 H 0.064 0.936 5 C -0.178 4.178 6 C 0.082 3.918 7 H 0.073 0.927 8 N -0.675 5.675 9 C 0.186 3.814 10 H -0.002 1.002 11 C -0.129 4.129 12 C -0.527 4.527 13 H 0.075 0.925 14 C 0.078 3.922 15 N -0.889 5.889 16 Si 0.865 3.135 17 H -0.282 1.282 18 H -0.286 1.286 19 H -0.256 1.256 20 C -0.139 4.139 21 C 0.062 3.938 22 O -0.384 6.384 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.337 0.663 31 H 0.018 0.982 32 H 0.041 0.959 33 H 0.052 0.948 34 H 0.264 0.736 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.189 -5.254 12.782 13.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C 0.033 3.967 4 H 0.081 0.919 5 C -0.218 4.218 6 C -0.030 4.030 7 H 0.091 0.909 8 N -0.307 5.307 9 C 0.077 3.923 10 H 0.015 0.985 11 C -0.187 4.187 12 C -0.565 4.565 13 H 0.093 0.907 14 C -0.125 4.125 15 N -0.525 5.525 16 Si 0.692 3.308 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.180 1.180 20 C -0.178 4.178 21 C -0.014 4.014 22 O -0.303 6.303 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.157 0.843 31 H 0.037 0.963 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.992 -4.720 12.897 13.770 hybrid contribution 0.937 -1.242 -0.816 1.757 sum -0.055 -5.963 12.081 13.473 Atomic orbital electron populations 1.21712 0.95432 1.01113 1.02361 1.21521 0.96568 0.94731 1.02326 1.22081 0.93648 0.93750 0.87176 0.91850 1.22836 0.96697 0.99606 1.02642 1.21603 0.99201 0.89946 0.92207 0.90894 1.60709 1.06194 1.57628 1.06167 1.19466 0.91573 0.92805 0.88435 0.98463 1.22018 0.97747 1.01073 0.97839 1.21039 0.99028 1.47778 0.88660 0.90664 1.24879 0.96967 0.94924 0.95728 1.69996 1.40776 1.43126 0.98649 0.87123 0.84737 0.80563 0.78401 1.20814 1.21215 1.18045 1.22178 0.96665 1.01892 0.97045 1.22537 0.94351 0.82844 1.01691 1.87836 1.78793 1.25043 1.38670 0.93148 0.92108 0.92678 0.90747 0.91594 0.90807 0.91570 0.84299 0.96304 0.93989 0.92869 0.92649 0.92018 0.90487 0.92320 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.81 37.15 0.36 -1.45 16 2 C -0.11 -1.50 5.64 -26.73 -0.15 -1.65 16 3 C 0.09 1.38 2.39 -26.68 -0.06 1.32 16 4 H 0.06 1.06 6.42 -51.93 -0.33 0.73 16 5 C -0.18 -2.80 4.99 -26.59 -0.13 -2.94 16 6 C 0.08 1.37 2.68 -67.53 -0.18 1.19 16 7 H 0.07 1.27 7.25 -51.93 -0.38 0.90 16 8 N -0.67 -13.52 5.65 -100.76 -0.57 -14.09 16 9 C 0.19 4.34 1.94 -68.86 -0.13 4.21 16 10 H 0.00 -0.05 5.71 -51.93 -0.30 -0.35 16 11 C -0.13 -2.88 8.76 37.16 0.33 -2.55 16 12 C -0.53 -14.51 8.98 -34.44 -0.31 -14.82 16 13 H 0.08 2.25 7.89 -52.49 -0.41 1.83 16 14 C 0.08 2.21 5.33 -17.82 -0.09 2.12 16 15 N -0.89 -26.72 13.96 55.43 0.77 -25.95 16 16 Si 0.86 21.09 25.82 -169.99 -4.39 16.70 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.26 -5.95 5.57 56.52 0.32 -5.64 16 20 C -0.14 -2.00 5.85 -26.50 -0.16 -2.15 16 21 C 0.06 0.88 6.61 37.30 0.25 1.13 16 22 O -0.38 -5.85 9.95 -35.23 -0.35 -6.21 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.76 7.82 -51.93 -0.41 0.35 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.25 7.53 -51.93 -0.39 0.86 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.34 6.87 5.35 -39.29 -0.21 6.66 16 31 H 0.02 0.36 7.58 -51.93 -0.39 -0.03 16 32 H 0.04 0.96 5.19 -51.93 -0.27 0.69 16 33 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 0.89 7.40 -51.93 -0.38 0.50 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 287.86 15.07 4.34 4.34 Total: -1.00 -28.95 287.86 -6.98 -35.93 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.50 Total: 4.87 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -0.28 Total: -15.59 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.20 Total: -40.04 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.35 Total: -6.21 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.39 Total: 16.70 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.95 -6.98 -35.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663171028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.958 kcal (2) G-P(sol) polarization free energy of solvation -28.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds