Wall clock time and date at job start Sun Mar 29 2020 21:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47229 * 2 1 4 4 H 1.08992 * 109.49139 * 305.03363 * 3 2 1 5 5 C 1.53089 * 109.48191 * 184.99934 * 3 2 1 6 6 C 1.53176 * 109.16311 * 182.41209 * 5 3 2 7 7 H 1.09001 * 109.54706 * 176.93922 * 6 5 3 8 8 N 1.46897 * 109.54417 * 297.11362 * 6 5 3 9 9 C 1.46900 * 110.99946 * 273.63650 * 8 6 5 10 10 H 1.08997 * 109.47138 * 33.55853 * 9 8 6 11 11 C 1.53000 * 109.47493 * 273.55222 * 9 8 6 12 12 C 1.50705 * 109.46797 * 153.55530 * 9 8 6 13 13 H 1.07997 * 120.00074 * 5.22656 * 12 9 8 14 14 C 1.37878 * 119.99688 * 185.22416 * 12 9 8 15 15 N 1.31518 * 119.99642 * 196.57988 * 14 12 9 16 16 Si 1.86795 * 120.00418 * 16.58451 * 14 12 9 17 17 H 1.48491 * 109.47497 * 95.69351 * 16 14 12 18 18 H 1.48496 * 109.47247 * 215.69986 * 16 14 12 19 19 H 1.48505 * 109.46742 * 335.69862 * 16 14 12 20 20 C 1.53181 * 109.10925 * 57.02644 * 6 5 3 21 21 C 1.53272 * 109.06273 * 303.05973 * 20 6 5 22 22 O 1.42902 * 109.46496 * 57.55414 * 21 20 6 23 23 H 1.08997 * 109.47586 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47451 * 299.99790 * 1 2 3 25 25 H 1.09003 * 109.47304 * 59.99393 * 1 2 3 26 26 H 1.09002 * 109.47268 * 240.00627 * 2 1 3 27 27 H 1.09003 * 109.47304 * 120.00607 * 2 1 3 28 28 H 1.08999 * 109.52320 * 62.50951 * 5 3 2 29 29 H 1.08996 * 109.52351 * 302.31575 * 5 3 2 30 30 H 1.00900 * 110.99766 * 37.59539 * 8 6 5 31 31 H 1.09001 * 109.46387 * 62.70054 * 11 9 8 32 32 H 1.08991 * 109.47219 * 182.70220 * 11 9 8 33 33 H 1.09001 * 109.46897 * 302.71058 * 11 9 8 34 34 H 0.96999 * 119.99657 * 180.02562 * 15 14 12 35 35 H 1.08998 * 109.52290 * 62.88651 * 20 6 5 36 36 H 1.09000 * 109.52047 * 183.06880 * 20 6 5 37 37 H 1.09005 * 109.45738 * 297.55402 * 21 20 6 38 38 H 1.08999 * 109.45985 * 177.55592 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6051 1.9820 -0.8413 5 6 3.5657 1.4446 -0.1258 6 6 4.0733 2.8885 -0.0644 7 1 5.1627 2.8938 -0.0988 8 7 3.5420 3.6451 -1.2060 9 6 4.4038 3.4921 -2.3858 10 1 4.8405 2.4935 -2.3897 11 6 5.5204 4.5371 -2.3407 12 6 3.5839 3.6867 -3.6352 13 1 2.5487 3.9852 -3.5608 14 6 4.1555 3.4837 -4.8734 15 7 3.5704 3.9547 -5.9530 16 14 5.7608 2.5395 -5.0176 17 1 5.4719 1.1162 -5.3272 18 1 6.5838 3.1256 -6.1058 19 1 6.5029 2.6260 -3.7342 20 6 3.5986 3.5318 1.2423 21 6 2.0700 3.4478 1.3152 22 8 1.6631 2.0811 1.2217 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.8533 0.9975 -1.0773 29 1 3.9995 0.8709 0.6932 30 1 2.5936 3.3694 -1.4126 31 1 6.1422 4.3665 -1.4619 32 1 6.1313 4.4550 -3.2396 33 1 5.0831 5.5341 -2.2883 34 1 3.9724 3.8115 -6.8241 35 1 4.0332 3.0002 2.0888 36 1 3.9099 4.5761 1.2681 37 1 1.6355 4.0136 0.4910 38 1 1.7282 3.8648 2.2625 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663171028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:08 Heat of formation + Delta-G solvation = -81.305302 kcal Electronic energy + Delta-G solvation = -16923.951168 eV Core-core repulsion = 14378.856298 eV Total energy + Delta-G solvation = -2545.094869 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.85493 -37.58614 -35.02632 -34.82301 -33.12381 -30.72041 -29.43660 -27.23178 -25.70755 -24.56578 -22.38974 -22.08405 -20.12221 -18.86909 -17.43810 -17.28510 -16.68314 -16.01487 -15.75350 -15.35247 -14.97958 -14.65114 -14.48719 -14.23743 -14.07669 -13.70469 -13.27204 -12.86014 -12.77727 -12.67913 -12.48929 -12.34326 -12.21380 -12.06690 -11.81526 -11.66443 -11.43602 -11.26343 -11.03420 -10.60980 -10.24228 -9.10729 -8.34479 -6.33165 1.30819 1.34973 1.45036 2.32170 2.87974 3.00215 3.45543 3.79719 3.87574 3.99761 4.15720 4.19397 4.37797 4.43179 4.54456 4.59160 4.62799 4.72244 4.85831 4.86556 4.93655 4.94667 5.00123 5.04942 5.08767 5.15875 5.17783 5.28377 5.34446 5.43261 5.51230 5.73092 6.00956 6.34141 6.49125 6.67208 6.83187 7.31916 8.82341 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027937 B = 0.008457 C = 0.007465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.018474 B = 3310.262826 C = 3749.799698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C 0.092 3.908 4 H 0.038 0.962 5 C -0.173 4.173 6 C 0.076 3.924 7 H 0.073 0.927 8 N -0.677 5.677 9 C 0.191 3.809 10 H -0.002 1.002 11 C -0.125 4.125 12 C -0.531 4.531 13 H 0.034 0.966 14 C 0.023 3.977 15 N -0.937 5.937 16 Si 0.929 3.071 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.234 1.234 20 C -0.131 4.131 21 C 0.060 3.940 22 O -0.386 6.386 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.331 0.669 31 H 0.047 0.953 32 H 0.034 0.966 33 H 0.043 0.957 34 H 0.266 0.734 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.041 0.959 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.209 -6.393 14.808 16.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C 0.034 3.966 4 H 0.056 0.944 5 C -0.213 4.213 6 C -0.034 4.034 7 H 0.091 0.909 8 N -0.309 5.309 9 C 0.082 3.918 10 H 0.016 0.984 11 C -0.183 4.183 12 C -0.569 4.569 13 H 0.052 0.948 14 C -0.176 4.176 15 N -0.576 5.576 16 Si 0.753 3.247 17 H -0.203 1.203 18 H -0.210 1.210 19 H -0.157 1.157 20 C -0.169 4.169 21 C -0.017 4.017 22 O -0.306 6.306 23 H 0.088 0.912 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.151 0.849 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.059 0.941 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.406 -5.859 14.956 16.068 hybrid contribution 0.400 -0.837 -1.408 1.686 sum 0.806 -6.697 13.548 15.135 Atomic orbital electron populations 1.21687 0.94836 1.02169 1.01659 1.21537 0.97123 0.93352 1.02999 1.22055 0.93345 0.94721 0.86490 0.94381 1.22770 0.96995 0.98931 1.02558 1.21756 0.99141 0.90595 0.91957 0.90920 1.60690 1.05563 1.58730 1.05894 1.19315 0.91644 0.93055 0.87828 0.98405 1.21933 0.97515 1.00052 0.98847 1.21304 0.97825 1.46899 0.90858 0.94776 1.25730 1.00980 0.95669 0.95250 1.70128 1.43128 1.45008 0.99378 0.86088 0.80383 0.78909 0.79302 1.20294 1.20995 1.15676 1.22127 0.96649 1.02097 0.96071 1.22651 0.94334 0.82275 1.02424 1.87840 1.78934 1.25498 1.38307 0.91227 0.92413 0.93763 0.90588 0.90313 0.92375 0.89549 0.84899 0.93371 0.94669 0.93821 0.92490 0.89902 0.90218 0.94080 0.87086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.81 71.98 0.71 -2.67 16 2 C -0.11 -2.78 5.64 30.59 0.17 -2.61 16 3 C 0.09 2.70 2.39 30.62 0.07 2.77 16 4 H 0.04 1.31 6.42 -2.39 -0.02 1.30 16 5 C -0.17 -5.13 4.99 30.68 0.15 -4.98 16 6 C 0.08 2.40 2.68 45.04 0.12 2.53 16 7 H 0.07 2.32 7.25 -2.39 -0.02 2.30 16 8 N -0.68 -26.87 5.65 -472.70 -2.67 -29.54 16 9 C 0.19 8.79 1.94 44.17 0.09 8.88 16 10 H 0.00 -0.07 5.71 -2.39 -0.01 -0.09 16 11 C -0.13 -5.40 8.76 71.98 0.63 -4.76 16 12 C -0.53 -29.90 8.98 25.60 0.23 -29.67 16 13 H 0.03 2.14 7.89 -2.91 -0.02 2.12 16 14 C 0.02 1.29 5.33 84.65 0.45 1.75 16 15 N -0.94 -57.90 13.96 21.45 0.30 -57.60 16 16 Si 0.93 43.23 25.82 68.60 1.77 45.00 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.23 -9.94 5.57 99.48 0.55 -9.39 16 20 C -0.13 -3.41 5.85 30.75 0.18 -3.23 16 21 C 0.06 1.57 6.61 72.07 0.48 2.04 16 22 O -0.39 -11.07 9.95 -148.98 -1.48 -12.55 16 23 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.06 1.36 7.82 -2.39 -0.02 1.34 16 25 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.06 1.90 7.53 -2.39 -0.02 1.88 16 29 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.33 13.84 5.35 -89.69 -0.48 13.37 16 31 H 0.05 1.77 7.58 -2.39 -0.02 1.75 16 32 H 0.03 1.53 5.19 -2.39 -0.01 1.52 16 33 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.04 1.22 7.40 -2.38 -0.02 1.20 16 38 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -62.38 287.86 1.59 -60.80 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.39 Total: 23.86 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 3.28 Total: -29.97 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -2.37 Total: -87.14 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -1.48 Total: -12.55 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.77 Total: 45.00 kcal Total: -62.38 1.59 -60.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663171028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.510 kcal (2) G-P(sol) polarization free energy of solvation -62.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds