Wall clock time and date at job start Sun Mar 29 2020 21:42:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 C 1.53000 * 109.47229 * 2 1
4 4 H 1.08992 * 109.49139 * 305.03363 * 3 2 1
5 5 C 1.53089 * 109.48191 * 184.99934 * 3 2 1
6 6 C 1.53176 * 109.16311 * 182.41209 * 5 3 2
7 7 H 1.09001 * 109.54706 * 176.93922 * 6 5 3
8 8 N 1.46897 * 109.54417 * 297.11362 * 6 5 3
9 9 C 1.46900 * 110.99946 * 273.63650 * 8 6 5
10 10 H 1.08997 * 109.47138 * 33.55853 * 9 8 6
11 11 C 1.53000 * 109.47493 * 273.55222 * 9 8 6
12 12 C 1.50705 * 109.46797 * 153.55530 * 9 8 6
13 13 H 1.07997 * 120.00074 * 5.22656 * 12 9 8
14 14 C 1.37878 * 119.99688 * 185.22416 * 12 9 8
15 15 N 1.31518 * 119.99642 * 196.57988 * 14 12 9
16 16 Si 1.86795 * 120.00418 * 16.58451 * 14 12 9
17 17 H 1.48491 * 109.47497 * 95.69351 * 16 14 12
18 18 H 1.48496 * 109.47247 * 215.69986 * 16 14 12
19 19 H 1.48505 * 109.46742 * 335.69862 * 16 14 12
20 20 C 1.53181 * 109.10925 * 57.02644 * 6 5 3
21 21 C 1.53272 * 109.06273 * 303.05973 * 20 6 5
22 22 O 1.42902 * 109.46496 * 57.55414 * 21 20 6
23 23 H 1.08997 * 109.47586 * 179.97438 * 1 2 3
24 24 H 1.08996 * 109.47451 * 299.99790 * 1 2 3
25 25 H 1.09003 * 109.47304 * 59.99393 * 1 2 3
26 26 H 1.09002 * 109.47268 * 240.00627 * 2 1 3
27 27 H 1.09003 * 109.47304 * 120.00607 * 2 1 3
28 28 H 1.08999 * 109.52320 * 62.50951 * 5 3 2
29 29 H 1.08996 * 109.52351 * 302.31575 * 5 3 2
30 30 H 1.00900 * 110.99766 * 37.59539 * 8 6 5
31 31 H 1.09001 * 109.46387 * 62.70054 * 11 9 8
32 32 H 1.08991 * 109.47219 * 182.70220 * 11 9 8
33 33 H 1.09001 * 109.46897 * 302.71058 * 11 9 8
34 34 H 0.96999 * 119.99657 * 180.02562 * 15 14 12
35 35 H 1.08998 * 109.52290 * 62.88651 * 20 6 5
36 36 H 1.09000 * 109.52047 * 183.06880 * 20 6 5
37 37 H 1.09005 * 109.45738 * 297.55402 * 21 20 6
38 38 H 1.08999 * 109.45985 * 177.55592 * 21 20 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6051 1.9820 -0.8413
5 6 3.5657 1.4446 -0.1258
6 6 4.0733 2.8885 -0.0644
7 1 5.1627 2.8938 -0.0988
8 7 3.5420 3.6451 -1.2060
9 6 4.4038 3.4921 -2.3858
10 1 4.8405 2.4935 -2.3897
11 6 5.5204 4.5371 -2.3407
12 6 3.5839 3.6867 -3.6352
13 1 2.5487 3.9852 -3.5608
14 6 4.1555 3.4837 -4.8734
15 7 3.5704 3.9547 -5.9530
16 14 5.7608 2.5395 -5.0176
17 1 5.4719 1.1162 -5.3272
18 1 6.5838 3.1256 -6.1058
19 1 6.5029 2.6260 -3.7342
20 6 3.5986 3.5318 1.2423
21 6 2.0700 3.4478 1.3152
22 8 1.6631 2.0811 1.2217
23 1 -0.3634 -1.0276 -0.0005
24 1 -0.3634 0.5138 0.8899
25 1 -0.3634 0.5139 -0.8899
26 1 1.8933 -0.5137 -0.8900
27 1 1.8933 -0.5139 0.8899
28 1 3.8533 0.9975 -1.0773
29 1 3.9995 0.8709 0.6932
30 1 2.5936 3.3694 -1.4126
31 1 6.1422 4.3665 -1.4619
32 1 6.1313 4.4550 -3.2396
33 1 5.0831 5.5341 -2.2883
34 1 3.9724 3.8115 -6.8241
35 1 4.0332 3.0002 2.0888
36 1 3.9099 4.5761 1.2681
37 1 1.6355 4.0136 0.4910
38 1 1.7282 3.8648 2.2625
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001663171028.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:42:08
Heat of formation + Delta-G solvation = -81.305302 kcal
Electronic energy + Delta-G solvation = -16923.951168 eV
Core-core repulsion = 14378.856298 eV
Total energy + Delta-G solvation = -2545.094869 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.85493 -37.58614 -35.02632 -34.82301 -33.12381 -30.72041 -29.43660 -27.23178
-25.70755 -24.56578 -22.38974 -22.08405 -20.12221 -18.86909 -17.43810 -17.28510
-16.68314 -16.01487 -15.75350 -15.35247 -14.97958 -14.65114 -14.48719 -14.23743
-14.07669 -13.70469 -13.27204 -12.86014 -12.77727 -12.67913 -12.48929 -12.34326
-12.21380 -12.06690 -11.81526 -11.66443 -11.43602 -11.26343 -11.03420 -10.60980
-10.24228 -9.10729 -8.34479 -6.33165 1.30819 1.34973 1.45036 2.32170
2.87974 3.00215 3.45543 3.79719 3.87574 3.99761 4.15720 4.19397
4.37797 4.43179 4.54456 4.59160 4.62799 4.72244 4.85831 4.86556
4.93655 4.94667 5.00123 5.04942 5.08767 5.15875 5.17783 5.28377
5.34446 5.43261 5.51230 5.73092 6.00956 6.34141 6.49125 6.67208
6.83187 7.31916 8.82341
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.027937 B = 0.008457 C = 0.007465
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1002.018474 B = 3310.262826 C = 3749.799698
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.113 4.113
3 C 0.092 3.908
4 H 0.038 0.962
5 C -0.173 4.173
6 C 0.076 3.924
7 H 0.073 0.927
8 N -0.677 5.677
9 C 0.191 3.809
10 H -0.002 1.002
11 C -0.125 4.125
12 C -0.531 4.531
13 H 0.034 0.966
14 C 0.023 3.977
15 N -0.937 5.937
16 Si 0.929 3.071
17 H -0.277 1.277
18 H -0.284 1.284
19 H -0.234 1.234
20 C -0.131 4.131
21 C 0.060 3.940
22 O -0.386 6.386
23 H 0.069 0.931
24 H 0.057 0.943
25 H 0.043 0.957
26 H 0.076 0.924
27 H 0.078 0.922
28 H 0.058 0.942
29 H 0.086 0.914
30 H 0.331 0.669
31 H 0.047 0.953
32 H 0.034 0.966
33 H 0.043 0.957
34 H 0.266 0.734
35 H 0.082 0.918
36 H 0.079 0.921
37 H 0.041 0.959
38 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.209 -6.393 14.808 16.130
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.150 4.150
3 C 0.034 3.966
4 H 0.056 0.944
5 C -0.213 4.213
6 C -0.034 4.034
7 H 0.091 0.909
8 N -0.309 5.309
9 C 0.082 3.918
10 H 0.016 0.984
11 C -0.183 4.183
12 C -0.569 4.569
13 H 0.052 0.948
14 C -0.176 4.176
15 N -0.576 5.576
16 Si 0.753 3.247
17 H -0.203 1.203
18 H -0.210 1.210
19 H -0.157 1.157
20 C -0.169 4.169
21 C -0.017 4.017
22 O -0.306 6.306
23 H 0.088 0.912
24 H 0.076 0.924
25 H 0.062 0.938
26 H 0.094 0.906
27 H 0.097 0.903
28 H 0.076 0.924
29 H 0.105 0.895
30 H 0.151 0.849
31 H 0.066 0.934
32 H 0.053 0.947
33 H 0.062 0.938
34 H 0.075 0.925
35 H 0.101 0.899
36 H 0.098 0.902
37 H 0.059 0.941
38 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges 0.406 -5.859 14.956 16.068
hybrid contribution 0.400 -0.837 -1.408 1.686
sum 0.806 -6.697 13.548 15.135
Atomic orbital electron populations
1.21687 0.94836 1.02169 1.01659 1.21537 0.97123 0.93352 1.02999
1.22055 0.93345 0.94721 0.86490 0.94381 1.22770 0.96995 0.98931
1.02558 1.21756 0.99141 0.90595 0.91957 0.90920 1.60690 1.05563
1.58730 1.05894 1.19315 0.91644 0.93055 0.87828 0.98405 1.21933
0.97515 1.00052 0.98847 1.21304 0.97825 1.46899 0.90858 0.94776
1.25730 1.00980 0.95669 0.95250 1.70128 1.43128 1.45008 0.99378
0.86088 0.80383 0.78909 0.79302 1.20294 1.20995 1.15676 1.22127
0.96649 1.02097 0.96071 1.22651 0.94334 0.82275 1.02424 1.87840
1.78934 1.25498 1.38307 0.91227 0.92413 0.93763 0.90588 0.90313
0.92375 0.89549 0.84899 0.93371 0.94669 0.93821 0.92490 0.89902
0.90218 0.94080 0.87086
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.38 9.81 71.98 0.71 -2.67 16
2 C -0.11 -2.78 5.64 30.59 0.17 -2.61 16
3 C 0.09 2.70 2.39 30.62 0.07 2.77 16
4 H 0.04 1.31 6.42 -2.39 -0.02 1.30 16
5 C -0.17 -5.13 4.99 30.68 0.15 -4.98 16
6 C 0.08 2.40 2.68 45.04 0.12 2.53 16
7 H 0.07 2.32 7.25 -2.39 -0.02 2.30 16
8 N -0.68 -26.87 5.65 -472.70 -2.67 -29.54 16
9 C 0.19 8.79 1.94 44.17 0.09 8.88 16
10 H 0.00 -0.07 5.71 -2.39 -0.01 -0.09 16
11 C -0.13 -5.40 8.76 71.98 0.63 -4.76 16
12 C -0.53 -29.90 8.98 25.60 0.23 -29.67 16
13 H 0.03 2.14 7.89 -2.91 -0.02 2.12 16
14 C 0.02 1.29 5.33 84.65 0.45 1.75 16
15 N -0.94 -57.90 13.96 21.45 0.30 -57.60 16
16 Si 0.93 43.23 25.82 68.60 1.77 45.00 16
17 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16
18 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16
19 H -0.23 -9.94 5.57 99.48 0.55 -9.39 16
20 C -0.13 -3.41 5.85 30.75 0.18 -3.23 16
21 C 0.06 1.57 6.61 72.07 0.48 2.04 16
22 O -0.39 -11.07 9.95 -148.98 -1.48 -12.55 16
23 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16
24 H 0.06 1.36 7.82 -2.39 -0.02 1.34 16
25 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16
26 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16
27 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16
28 H 0.06 1.90 7.53 -2.39 -0.02 1.88 16
29 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16
30 H 0.33 13.84 5.35 -89.69 -0.48 13.37 16
31 H 0.05 1.77 7.58 -2.39 -0.02 1.75 16
32 H 0.03 1.53 5.19 -2.39 -0.01 1.52 16
33 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16
34 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16
35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16
36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16
37 H 0.04 1.22 7.40 -2.38 -0.02 1.20 16
38 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16
Total: -1.00 -62.38 287.86 1.59 -60.80
By element:
Atomic # 1 Polarization: 23.48 SS G_CDS: 0.39 Total: 23.86 kcal
Atomic # 6 Polarization: -33.24 SS G_CDS: 3.28 Total: -29.97 kcal
Atomic # 7 Polarization: -84.77 SS G_CDS: -2.37 Total: -87.14 kcal
Atomic # 8 Polarization: -11.07 SS G_CDS: -1.48 Total: -12.55 kcal
Atomic # 14 Polarization: 43.23 SS G_CDS: 1.77 Total: 45.00 kcal
Total: -62.38 1.59 -60.80 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001663171028.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.510 kcal
(2) G-P(sol) polarization free energy of solvation -62.380 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.890 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.795 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.305 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds