Wall clock time and date at job start Sun Mar 29 2020 22:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00350 * 2 1 4 4 H 1.09002 * 109.47333 * 329.99881 * 3 2 1 5 5 C 1.53002 * 109.47308 * 90.00066 * 3 2 1 6 6 C 1.53000 * 109.47233 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47060 * 299.99657 * 6 5 3 8 8 C 1.52999 * 109.47317 * 59.99960 * 7 6 5 9 9 H 1.09002 * 109.46716 * 60.00091 * 8 7 6 10 10 N 1.46898 * 109.47548 * 179.97438 * 8 7 6 11 11 C 1.46902 * 110.99873 * 58.95499 * 10 8 7 12 12 C 1.46898 * 111.00078 * 295.00001 * 10 8 7 13 13 C 1.50697 * 109.47331 * 189.99410 * 12 10 8 14 14 H 1.07997 * 119.99589 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00270 * 180.02562 * 13 12 10 16 16 N 1.31515 * 119.99813 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00134 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46936 * 90.00080 * 17 15 13 19 19 H 1.48497 * 109.47359 * 210.00120 * 17 15 13 20 20 H 1.48501 * 109.47450 * 330.00263 * 17 15 13 21 21 C 1.52997 * 109.47503 * 210.00040 * 3 2 1 22 22 H 1.08997 * 109.46733 * 59.99872 * 1 2 3 23 23 H 1.08997 * 109.46830 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47064 * 300.00018 * 1 2 3 25 25 H 1.08992 * 109.47063 * 60.00217 * 5 3 2 26 26 H 1.09004 * 109.46733 * 299.99930 * 5 3 2 27 27 H 1.09002 * 109.47398 * 59.99826 * 6 5 3 28 28 H 1.09001 * 109.47194 * 180.02562 * 6 5 3 29 29 H 1.08996 * 109.47853 * 180.02562 * 7 6 5 30 30 H 1.09002 * 109.47153 * 300.00319 * 7 6 5 31 31 H 1.09008 * 109.46689 * 60.00227 * 11 10 8 32 32 H 1.09003 * 109.47283 * 179.97438 * 11 10 8 33 33 H 1.08994 * 109.47461 * 300.00256 * 11 10 8 34 34 H 1.08994 * 109.47469 * 310.00157 * 12 10 8 35 35 H 1.09002 * 109.46862 * 70.00000 * 12 10 8 36 36 H 0.96992 * 119.99824 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.47153 * 299.99957 * 21 3 2 38 38 H 1.09001 * 109.47289 * 60.00040 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 -0.5139 5 6 2.2178 1.7713 1.4425 6 6 2.8396 3.1693 1.4425 7 6 4.1882 3.1276 0.7211 8 6 3.9808 2.6616 -0.7214 9 1 3.3153 3.3553 -1.2351 10 7 5.2755 2.6221 -1.4142 11 6 6.2091 1.7144 -0.7341 12 6 5.8476 3.9695 -1.5383 13 6 7.0401 3.9262 -2.4585 14 1 7.3426 2.9913 -2.9067 15 6 7.7451 5.0800 -2.7282 16 7 7.3770 6.2183 -2.1820 17 14 9.2229 5.0264 -3.8694 18 1 8.7789 5.2670 -5.2659 19 1 10.1944 6.0765 -3.4710 20 1 9.8704 3.6930 -3.7787 21 6 3.3589 1.2632 -0.7212 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 2.8830 1.0774 1.9563 26 1 1.2569 1.8014 1.9563 27 1 2.1740 3.8630 0.9288 28 1 2.9878 3.5010 2.4701 29 1 4.6315 4.1233 0.7214 30 1 4.8537 2.4338 1.2348 31 1 5.7904 0.7080 -0.7180 32 1 7.1594 1.7037 -1.2679 33 1 6.3699 2.0574 0.2879 34 1 5.0975 4.6464 -1.9471 35 1 6.1596 4.3236 -0.5557 36 1 7.8732 7.0299 -2.3714 37 1 4.0242 0.5693 -0.2074 38 1 3.2112 0.9313 -1.7489 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069848621.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:33 Heat of formation + Delta-G solvation = -57.527855 kcal Electronic energy + Delta-G solvation = -16551.565070 eV Core-core repulsion = 14007.501269 eV Total energy + Delta-G solvation = -2544.063802 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.41068 -37.28507 -34.58890 -32.44072 -30.21288 -28.89748 -27.02915 -26.42443 -24.96183 -22.40381 -21.98067 -20.37472 -18.92786 -16.60914 -16.17825 -15.63552 -15.16523 -14.80086 -14.23866 -14.11255 -13.89912 -13.50479 -13.17941 -12.75825 -12.20721 -11.99852 -11.91078 -11.69616 -11.32395 -10.95438 -10.83400 -10.78848 -10.71563 -10.42026 -10.37546 -10.15719 -10.08462 -9.72948 -9.38793 -9.16373 -8.40212 -7.12501 -6.00337 -4.01151 3.33929 3.39669 3.43499 3.75204 4.44949 4.81570 4.87872 5.13165 5.19821 5.26739 5.31714 5.36431 5.43827 5.46795 5.54096 5.62564 5.73382 5.77033 5.89433 6.10126 6.12114 6.16440 6.32800 6.34821 6.41661 6.47223 6.65230 6.77262 6.84689 7.25723 7.34927 7.41154 7.83924 8.13161 8.25461 8.60339 9.06865 9.62895 11.10555 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.050764 B = 0.005697 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.437741 B = 4913.845087 C = 5149.728971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.091 3.909 4 H 0.059 0.941 5 C -0.137 4.137 6 C -0.111 4.111 7 C -0.156 4.156 8 C 0.090 3.910 9 H 0.074 0.926 10 N -0.534 5.534 11 C 0.031 3.969 12 C 0.193 3.807 13 C -0.506 4.506 14 H 0.063 0.937 15 C 0.055 3.945 16 N -0.900 5.900 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.274 1.274 21 C -0.106 4.106 22 H 0.040 0.960 23 H 0.081 0.919 24 H 0.037 0.963 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.015 0.985 34 H 0.028 0.972 35 H -0.005 1.005 36 H 0.260 0.740 37 H 0.069 0.931 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.380 -8.420 6.542 15.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.033 3.967 4 H 0.077 0.923 5 C -0.175 4.175 6 C -0.150 4.150 7 C -0.195 4.195 8 C -0.020 4.020 9 H 0.092 0.908 10 N -0.257 5.257 11 C -0.117 4.117 12 C 0.068 3.932 13 C -0.545 4.545 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.540 5.540 17 Si 0.725 3.275 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.199 1.199 21 C -0.144 4.144 22 H 0.059 0.941 23 H 0.100 0.900 24 H 0.056 0.944 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.034 0.966 34 H 0.046 0.954 35 H 0.012 0.988 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.276 -8.573 6.051 15.403 hybrid contribution 0.706 0.723 0.290 1.051 sum -10.570 -7.850 6.341 14.613 Atomic orbital electron populations 1.22738 0.81746 1.02272 0.99750 1.87906 1.19095 1.28493 1.95073 1.22177 0.95381 0.83767 0.95392 0.92290 1.22019 1.00738 0.97616 0.97135 1.21422 0.97237 0.95904 1.00404 1.22289 0.96855 1.02564 0.97834 1.21591 0.93540 0.95001 0.91855 0.90795 1.62306 1.01961 1.13398 1.48007 1.22295 0.97643 0.95425 0.96366 1.19725 0.94638 0.83170 0.95713 1.21196 1.11444 0.94572 1.27290 0.91892 1.24981 0.97849 0.95405 0.96390 1.69958 1.40661 0.99038 1.44307 0.86507 0.82320 0.77653 0.80985 1.20656 1.21369 1.19871 1.21646 0.93967 0.97964 1.00821 0.94148 0.90022 0.94395 0.91351 0.92476 0.92085 0.92116 0.91047 0.91817 0.93408 0.90943 0.96649 0.95437 0.98774 0.92993 0.91227 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 101.05 1.09 1.41 16 2 O -0.39 -5.28 10.35 -35.23 -0.36 -5.65 16 3 C 0.09 1.23 2.61 -26.73 -0.07 1.16 16 4 H 0.06 0.76 7.79 -51.93 -0.40 0.36 16 5 C -0.14 -1.72 5.54 -26.73 -0.15 -1.87 16 6 C -0.11 -1.49 5.92 -26.73 -0.16 -1.64 16 7 C -0.16 -2.59 4.51 -26.73 -0.12 -2.71 16 8 C 0.09 1.61 2.22 -67.69 -0.15 1.46 16 9 H 0.07 1.37 8.03 -51.93 -0.42 0.95 16 10 N -0.53 -11.62 4.74 -236.30 -1.12 -12.74 16 11 C 0.03 0.62 8.63 60.07 0.52 1.14 16 12 C 0.19 5.02 4.16 -4.98 -0.02 5.00 16 13 C -0.51 -14.34 8.46 -34.44 -0.29 -14.63 16 14 H 0.06 1.77 7.12 -52.49 -0.37 1.40 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 17 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 C -0.11 -1.67 4.65 -26.71 -0.12 -1.79 16 22 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 23 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.33 7.87 -51.93 -0.41 -0.07 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.63 7.87 -51.93 -0.41 0.22 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.34 6.75 -51.93 -0.35 0.99 16 30 H 0.06 1.06 6.39 -51.93 -0.33 0.73 16 31 H 0.05 0.83 6.33 -51.92 -0.33 0.50 16 32 H 0.07 1.55 6.76 -51.93 -0.35 1.20 16 33 H 0.02 0.30 6.28 -51.93 -0.33 -0.03 16 34 H 0.03 0.77 8.00 -51.93 -0.42 0.35 16 35 H -0.01 -0.15 6.94 -51.93 -0.36 -0.51 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.07 1.11 6.43 -51.93 -0.33 0.78 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 291.88 15.07 4.40 4.40 Total: -1.00 -29.88 291.88 -7.42 -37.30 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -6.48 Total: -2.97 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 0.43 Total: -11.02 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: -0.38 Total: -38.84 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.36 Total: -5.65 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.88 -7.42 -37.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069848621.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.227 kcal (2) G-P(sol) polarization free energy of solvation -29.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds