Wall clock time and date at job start Sun Mar 29 2020 21:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47635 * 2 1 4 4 C 1.53003 * 109.46642 * 240.00292 * 2 1 3 5 5 C 1.50692 * 109.47408 * 64.45265 * 4 2 1 6 6 H 1.08007 * 119.99843 * 5.07167 * 5 4 2 7 7 C 1.37879 * 120.00364 * 185.06997 * 5 4 2 8 8 N 1.31509 * 119.99786 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00227 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47323 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46950 * 120.00137 * 9 7 5 12 12 H 1.48494 * 109.47233 * 240.00388 * 9 7 5 13 13 N 1.46898 * 109.46757 * 120.00851 * 2 1 3 14 14 C 1.46842 * 111.00517 * 60.83963 * 13 2 1 15 15 C 1.53035 * 109.52663 * 185.83789 * 14 13 2 16 16 C 1.53127 * 109.27864 * 300.82536 * 15 14 13 17 17 C 1.53115 * 109.16160 * 57.65029 * 16 15 14 18 18 H 1.08998 * 109.50594 * 62.32663 * 17 16 15 19 19 C 1.52997 * 109.50177 * 182.40748 * 17 16 15 20 20 O 1.42904 * 109.46943 * 294.92241 * 19 17 16 21 21 C 1.46851 * 110.99474 * 185.09345 * 13 2 1 22 22 H 1.09006 * 109.46817 * 59.99156 * 1 2 3 23 23 H 1.08996 * 109.47665 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47342 * 299.99939 * 1 2 3 25 25 H 1.09006 * 109.47190 * 184.45113 * 4 2 1 26 26 H 1.09002 * 109.47433 * 304.44876 * 4 2 1 27 27 H 0.97005 * 119.99798 * 180.02562 * 8 7 5 28 28 H 1.09007 * 109.45997 * 65.82252 * 14 13 2 29 29 H 1.08992 * 109.45298 * 305.85473 * 14 13 2 30 30 H 1.09000 * 109.50221 * 180.88378 * 15 14 13 31 31 H 1.08994 * 109.53386 * 60.77957 * 15 14 13 32 32 H 1.09007 * 109.51839 * 297.74846 * 16 15 14 33 33 H 1.08998 * 109.52388 * 177.55878 * 16 15 14 34 34 H 1.09004 * 109.47031 * 174.92254 * 19 17 16 35 35 H 1.08998 * 109.47216 * 54.91964 * 19 17 16 36 36 H 0.96704 * 113.99370 * 180.02562 * 20 19 17 37 37 H 1.09007 * 109.49362 * 54.15855 * 21 13 2 38 38 H 1.09003 * 109.43114 * 294.19132 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6296 0.0500 -2.4772 6 1 1.1339 1.0041 -2.3751 7 6 1.8871 -0.4623 -3.7312 8 7 2.4902 -1.6243 -3.8556 9 14 1.3779 0.4934 -5.2532 10 1 0.7212 1.7613 -4.8450 11 1 2.5794 0.7996 -6.0704 12 1 0.4287 -0.3205 -6.0542 13 7 2.0196 -0.6927 1.1993 14 6 1.5652 -2.0888 1.2232 15 6 1.9689 -2.7356 2.5501 16 6 3.4913 -2.6720 2.7010 17 6 3.9434 -1.2111 2.6244 18 1 3.5050 -0.6507 3.4501 19 6 5.4692 -1.1432 2.7142 20 8 5.8915 -1.6007 4.0005 21 6 3.4824 -0.6078 1.2957 22 1 -0.3633 0.5140 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 3.1270 -0.7909 -1.2104 26 1 1.6129 -1.7233 -1.2902 27 1 2.6717 -1.9845 -4.7378 28 1 2.0245 -2.6343 0.3987 29 1 0.4807 -2.1195 1.1192 30 1 1.6452 -3.7763 2.5610 31 1 1.4988 -2.1996 3.3746 32 1 3.9610 -3.2412 1.8987 33 1 3.7798 -3.0925 3.6644 34 1 5.7963 -0.1135 2.5693 35 1 5.9071 -1.7756 1.9419 36 1 6.8499 -1.5846 4.1284 37 1 3.7903 0.4367 1.2448 38 1 3.9328 -1.1596 0.4706 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616015708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:51 Heat of formation + Delta-G solvation = -70.171023 kcal Electronic energy + Delta-G solvation = -16640.884593 eV Core-core repulsion = 14096.272543 eV Total energy + Delta-G solvation = -2544.612051 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.14689 -36.85349 -34.62534 -32.50993 -31.16528 -29.76730 -27.03778 -25.49172 -23.86982 -22.88507 -21.75124 -19.65899 -18.47861 -17.24558 -16.48524 -15.34427 -15.01965 -14.57433 -14.18328 -14.12021 -13.53196 -13.29629 -13.13810 -12.54861 -12.25463 -12.06202 -11.68094 -11.56850 -11.03289 -10.93008 -10.81242 -10.66270 -10.49013 -10.38144 -10.11653 -9.95154 -9.78105 -9.74102 -9.54568 -9.07466 -8.36843 -7.42444 -6.02307 -4.04151 3.28805 3.36714 3.40578 4.13563 4.43924 4.74701 4.97569 5.12766 5.26645 5.33240 5.47597 5.59571 5.71367 5.74248 5.88009 5.97224 5.99866 6.14400 6.21602 6.24193 6.30203 6.39235 6.45446 6.51197 6.57111 6.71732 6.84956 6.98949 7.05212 7.56373 7.58821 7.63571 7.75191 7.91406 8.00378 8.43006 9.02527 9.59545 11.08857 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034775 B = 0.006514 C = 0.006067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.992913 B = 4297.650194 C = 4614.026762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.080 3.920 3 H 0.067 0.933 4 C -0.003 4.003 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.890 3.110 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.535 5.535 14 C 0.049 3.951 15 C -0.116 4.116 16 C -0.109 4.109 17 C -0.082 4.082 18 H 0.080 0.920 19 C 0.080 3.920 20 O -0.574 6.574 21 C 0.062 3.938 22 H 0.065 0.935 23 H 0.046 0.954 24 H 0.039 0.961 25 H 0.012 0.988 26 H 0.022 0.978 27 H 0.259 0.741 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.375 0.625 37 H 0.068 0.932 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.270 -0.468 12.035 12.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.027 4.027 3 H 0.086 0.914 4 C -0.042 4.042 5 C -0.551 4.551 6 H 0.075 0.925 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.259 5.259 14 C -0.079 4.079 15 C -0.153 4.153 16 C -0.147 4.147 17 C -0.101 4.101 18 H 0.098 0.902 19 C 0.002 3.998 20 O -0.378 6.378 21 C -0.067 4.067 22 H 0.084 0.916 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.030 0.970 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.221 0.779 37 H 0.087 0.913 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.466 -0.419 12.391 12.641 hybrid contribution 0.802 0.104 -1.893 2.058 sum 3.269 -0.315 10.498 11.000 Atomic orbital electron populations 1.21725 0.95333 1.01035 1.00506 1.21831 0.95045 0.97479 0.88360 0.91435 1.19697 0.96099 0.96455 0.91899 1.21205 1.38001 1.05173 0.90756 0.92475 1.25020 0.95298 0.94979 0.99150 1.69976 1.42299 1.18077 1.23203 0.86569 0.78276 0.80146 0.83235 1.19683 1.21103 1.21053 1.62249 1.09218 1.13990 1.40460 1.22105 1.00534 0.89128 0.96136 1.21601 0.95734 0.99708 0.98305 1.21533 0.95930 0.95730 1.01471 1.21146 0.92624 0.97349 0.99001 0.90171 1.22221 0.95659 0.97681 0.84249 1.86472 1.27361 1.89122 1.34893 1.21919 0.89345 1.00313 0.95073 0.91621 0.93486 0.94212 0.97001 0.95933 0.93133 0.94056 0.90814 0.92177 0.91722 0.92549 0.91829 0.93653 0.93631 0.77939 0.91318 0.93917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.80 37.16 0.33 -2.16 16 2 C 0.08 1.67 2.38 -67.71 -0.16 1.51 16 3 H 0.07 1.44 8.08 -51.93 -0.42 1.02 16 4 C 0.00 -0.09 3.73 -27.89 -0.10 -0.19 16 5 C -0.51 -14.19 8.30 -34.44 -0.29 -14.48 16 6 H 0.06 1.54 7.22 -52.48 -0.38 1.16 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.54 -9.88 4.64 -226.69 -1.05 -10.94 16 14 C 0.05 0.86 4.64 -3.84 -0.02 0.85 16 15 C -0.12 -1.70 6.09 -26.65 -0.16 -1.86 16 16 C -0.11 -1.58 5.15 -26.61 -0.14 -1.72 16 17 C -0.08 -1.21 2.59 -90.54 -0.23 -1.44 16 18 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 19 C 0.08 1.01 6.43 37.16 0.24 1.25 16 20 O -0.57 -6.84 13.25 -35.23 -0.47 -7.31 16 21 C 0.06 1.07 4.32 -3.83 -0.02 1.05 16 22 H 0.06 1.33 7.02 -51.93 -0.36 0.97 16 23 H 0.05 0.90 6.30 -51.93 -0.33 0.57 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.01 0.32 6.45 -51.93 -0.33 -0.01 16 26 H 0.02 0.62 6.77 -51.93 -0.35 0.26 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.04 0.83 6.72 -51.93 -0.35 0.48 16 29 H 0.07 1.29 6.03 -51.93 -0.31 0.97 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 33 H 0.06 0.89 7.90 -51.93 -0.41 0.48 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.37 2.66 9.12 45.56 0.42 3.07 16 37 H 0.07 1.15 8.08 -51.92 -0.42 0.73 16 38 H 0.04 0.82 6.63 -51.93 -0.34 0.48 16 LS Contribution 291.54 15.07 4.39 4.39 Total: -1.00 -30.47 291.54 -7.75 -38.22 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.69 Total: 0.86 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -0.65 Total: -15.70 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.32 Total: -36.98 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.47 Total: -7.31 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.47 -7.75 -38.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616015708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.952 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds