Wall clock time and date at job start Sun Mar 29 2020 22:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46920 * 2 1 4 4 C 1.50694 * 109.47079 * 239.99645 * 2 1 3 5 5 H 1.08000 * 120.00074 * 275.10466 * 4 2 1 6 6 C 1.37873 * 120.00246 * 95.10258 * 4 2 1 7 7 N 1.31515 * 120.00226 * 184.90662 * 6 4 2 8 8 Si 1.86803 * 119.99974 * 4.91223 * 6 4 2 9 9 H 1.48509 * 109.46922 * 84.82003 * 8 6 4 10 10 H 1.48494 * 109.47176 * 204.82242 * 8 6 4 11 11 H 1.48501 * 109.46965 * 324.82255 * 8 6 4 12 12 C 1.50699 * 109.46588 * 119.99519 * 2 1 3 13 13 O 1.20828 * 119.99959 * 120.00458 * 12 2 1 14 14 O 1.34231 * 120.00224 * 299.99812 * 12 2 1 15 15 C 1.45206 * 116.99956 * 180.02562 * 14 12 2 16 16 C 1.52990 * 109.46940 * 180.02562 * 15 14 12 17 17 C 1.52997 * 113.00296 * 50.33369 * 16 15 14 18 18 C 1.54037 * 113.81847 * 278.50597 * 16 15 14 19 19 O 1.44442 * 85.42945 * 223.23817 * 18 16 15 20 20 C 1.44180 * 93.37680 * 24.08954 * 19 18 16 21 21 H 1.09001 * 109.47160 * 295.06635 * 1 2 3 22 22 H 1.09006 * 109.46836 * 55.06460 * 1 2 3 23 23 H 1.08999 * 109.47366 * 175.06453 * 1 2 3 24 24 H 0.97001 * 120.00087 * 180.02562 * 7 6 4 25 25 H 1.09005 * 109.46804 * 60.00262 * 15 14 12 26 26 H 1.08996 * 109.46704 * 300.00464 * 15 14 12 27 27 H 1.08996 * 109.47055 * 69.66684 * 17 16 15 28 28 H 1.09000 * 109.47511 * 189.66298 * 17 16 15 29 29 H 1.08998 * 109.47215 * 309.66554 * 17 16 15 30 30 H 1.09005 * 113.86595 * 337.34880 * 18 16 15 31 31 H 1.09005 * 113.86567 * 109.04995 * 18 16 15 32 32 H 1.09007 * 113.86241 * 221.76572 * 20 19 18 33 33 H 1.08995 * 113.98478 * 90.07898 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1339 -1.7857 -1.2295 6 6 2.3623 0.0121 -2.3573 7 7 2.7081 -0.6131 -3.4615 8 14 2.3182 1.8791 -2.3158 9 1 3.6040 2.3928 -1.7789 10 1 2.1126 2.4001 -3.6911 11 1 1.2029 2.3287 -1.4443 12 6 2.0322 -0.7103 1.2305 13 8 2.7269 -1.6927 1.1198 14 8 1.7079 -0.2516 2.4497 15 6 2.2275 -0.9855 3.5898 16 6 1.7554 -0.3189 4.8834 17 6 0.2469 -0.0646 4.9089 18 6 2.5989 0.9013 5.2982 19 8 2.5241 0.3540 6.6329 20 6 2.2948 -0.9890 6.1612 21 1 -0.3633 0.4354 0.9309 22 1 -0.3633 0.5885 -0.8425 23 1 -0.3634 -1.0238 -0.0884 24 1 2.9406 -0.1047 -4.2542 25 1 3.3171 -0.9844 3.5567 26 1 1.8640 -2.0126 3.5570 27 1 -0.2806 -1.0154 4.9854 28 1 -0.0021 0.5591 5.7675 29 1 -0.0514 0.4436 3.9920 30 1 3.6050 0.9051 4.8788 31 1 2.0830 1.8544 5.1815 32 1 1.5382 -1.5321 6.7275 33 1 3.2066 -1.5656 6.0055 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118405240.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:11 Heat of formation + Delta-G solvation = -109.956341 kcal Electronic energy + Delta-G solvation = -16195.506744 eV Core-core repulsion = 13415.617716 eV Total energy + Delta-G solvation = -2779.889028 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.84874 -39.46830 -35.87028 -33.83988 -32.56944 -31.35399 -27.29342 -26.73623 -25.46622 -25.34152 -22.82048 -19.67490 -19.01587 -17.31833 -16.58195 -16.39782 -16.27030 -15.75505 -15.38562 -14.96597 -14.08744 -13.68943 -13.21429 -12.85192 -12.54839 -12.48899 -12.29875 -12.07514 -11.59107 -11.40000 -11.15616 -10.89101 -10.78885 -10.62441 -10.38709 -10.06516 -9.91035 -9.80260 -9.28223 -9.21911 -8.67721 -6.18310 -4.20207 3.13857 3.20717 3.26757 3.28280 3.31828 3.53293 4.10315 4.29405 4.63772 4.85469 4.95506 5.15015 5.15609 5.33046 5.47902 5.51319 5.68061 5.70262 5.80998 5.91961 5.97224 5.98555 6.12758 6.21390 6.41189 6.46821 6.76922 7.04317 7.19903 7.46140 8.34918 8.76149 8.94714 9.39226 10.94126 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.044296 B = 0.006320 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.965475 B = 4429.199193 C = 4537.305079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.025 3.975 3 H 0.065 0.935 4 C -0.507 4.507 5 H 0.087 0.913 6 C 0.076 3.924 7 N -0.888 5.888 8 Si 0.870 3.130 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.261 1.261 12 C 0.461 3.539 13 O -0.502 6.502 14 O -0.365 6.365 15 C 0.070 3.930 16 C -0.127 4.127 17 C -0.126 4.126 18 C 0.045 3.955 19 O -0.381 6.381 20 C 0.047 3.953 21 H 0.037 0.963 22 H 0.057 0.943 23 H 0.051 0.949 24 H 0.267 0.733 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.597 3.159 15.816 16.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.005 3.995 3 H 0.082 0.918 4 C -0.544 4.544 5 H 0.105 0.895 6 C -0.127 4.127 7 N -0.525 5.525 8 Si 0.696 3.304 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.186 1.186 12 C 0.304 3.696 13 O -0.388 6.388 14 O -0.284 6.284 15 C -0.005 4.005 16 C -0.128 4.128 17 C -0.183 4.183 18 C -0.031 4.031 19 O -0.300 6.300 20 C -0.030 4.030 21 H 0.056 0.944 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.292 2.974 15.853 16.463 hybrid contribution 0.264 0.687 -0.288 0.790 sum -3.029 3.661 15.565 16.274 Atomic orbital electron populations 1.21924 0.95829 1.01489 0.99948 1.19171 0.94787 0.97024 0.88489 0.91770 1.20750 1.44204 0.96239 0.93242 0.89467 1.24999 0.94152 0.98316 0.95220 1.69871 1.44949 1.35973 1.01700 0.86971 0.79350 0.86240 0.77820 1.19869 1.20932 1.18555 1.25219 0.77171 0.83564 0.83619 1.90546 1.35368 1.26195 1.86661 1.86602 1.70479 1.55993 1.15295 1.22881 0.98578 0.95608 0.83431 1.23780 0.98737 0.96522 0.93722 1.21513 0.91368 1.02311 1.03130 1.24165 0.99529 0.97918 0.81505 1.89694 1.94217 1.20082 1.26015 1.24031 1.00091 0.86747 0.92147 0.94391 0.92356 0.92967 0.92254 0.91431 0.91351 0.92009 0.91943 0.90465 0.89852 0.88631 0.88760 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.14 37.16 0.34 -2.36 16 2 C 0.02 0.58 2.40 -92.92 -0.22 0.36 16 3 H 0.06 1.46 5.29 -51.93 -0.27 1.18 16 4 C -0.51 -14.27 8.36 -34.44 -0.29 -14.56 16 5 H 0.09 2.77 7.62 -52.49 -0.40 2.37 16 6 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 7 N -0.89 -26.71 13.96 55.43 0.77 -25.94 16 8 Si 0.87 20.44 26.99 -169.99 -4.59 15.85 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.26 -5.68 6.82 56.52 0.39 -5.30 16 12 C 0.46 10.29 7.25 36.01 0.26 10.55 16 13 O -0.50 -12.69 15.52 -18.75 -0.29 -12.98 16 14 O -0.37 -6.62 9.10 -39.26 -0.36 -6.97 16 15 C 0.07 1.03 4.93 37.15 0.18 1.21 16 16 C -0.13 -1.50 1.23 -153.43 -0.19 -1.69 16 17 C -0.13 -1.38 9.03 37.16 0.34 -1.04 16 18 C 0.05 0.53 8.34 37.64 0.31 0.84 16 19 O -0.38 -4.78 12.39 -35.23 -0.44 -5.22 16 20 C 0.05 0.48 8.37 37.64 0.31 0.80 16 21 H 0.04 0.65 8.00 -51.93 -0.42 0.23 16 22 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 23 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.07 1.00 7.98 -51.93 -0.41 0.58 16 26 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.62 8.06 -51.93 -0.42 0.21 16 29 H 0.08 0.93 7.41 -51.93 -0.38 0.55 16 30 H 0.08 0.93 7.99 -51.93 -0.41 0.51 16 31 H 0.10 1.01 8.10 -51.93 -0.42 0.59 16 32 H 0.09 0.80 8.10 -51.92 -0.42 0.38 16 33 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 LS Contribution 280.99 15.07 4.23 4.23 Total: -1.00 -31.58 280.99 -4.54 -36.12 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -4.82 Total: -1.25 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 0.95 Total: -3.84 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.77 Total: -25.94 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -1.08 Total: -25.18 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.59 Total: 15.85 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.58 -4.54 -36.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118405240.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.838 kcal (2) G-P(sol) polarization free energy of solvation -31.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds